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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSA790
Library VS
(Link to library)
Clone ID VSA790
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U04708-1
Original site URL
Representative seq. ID VSA790E
(Link to Original site)
Representative DNA sequence 
>VSA790 (VSA790Q) /CSM/VS/VSA7-D/VSA790Q.Seq.d/
ACCATTCATCTTTTTCTCAAAGGACCACAGATCAGTAATCAAAACTCTCATCCAAACTGT
TCATTTGGTGAAATCGGTAGCTTATTAGGTCAAGAATGGGCTAAAATCTCTGCAGAGGAC
AAAAAGAAATACGAGAAATTAGCCGCTGAAGATAAGAAGAGATGGGAACTCGAAAAGAAA
AACTATGATGAAAAATTAAAAACCCAAAGTCAAGCAGAATCTTCATCCGATAGTTCTGAT
GAAAGTGATTAAACTTTTAATTTAATTCACTCAATTATTTGTCACCACTATTACCATCAT
CATCATCATAATCATCATAATCAATTCATTCATCAATCAATCAATTCATCCATCATGTCT
ACAACCAACTGTGTCACTCTCTCTTTCTCTCTCTACCTTTGTTGTTTATTTATAAAACCC
AAACCAATCAACATTTCAACCACTACCAACCAAACAAATAAATAATAATAAAAAAAAAAA
AAAAAAAACCAAACTTTTTTTAAATTAAAAAAGAAAAAATAAATAAAAAAAAAAAAAAAT
AATAATAATAAT
sequence update 2000. 2.21
Translated Amino Acid sequence 
TIHLFLKGPQISNQNSHPNCSFGEIGSLLGQEWAKISAEDKKKYEKLAAEDKKRWELEKK
NYDEKLKTQSQAESSSDSSDESD*tfnlihsiichhyyhhhhhnhhnqfihqsinssims
ttncvtlsfslylcclfikpkpinistttnqtnk***kkkkknqtffklkkkk*ikkkkn
nnnn
Translated Amino Acid sequence (All Frames) 
Frame A:
TIHLFLKGPQISNQNSHPNCSFGEIGSLLGQEWAKISAEDKKKYEKLAAEDKKRWELEKK
NYDEKLKTQSQAESSSDSSDESD*tfnlihsiichhyyhhhhhnhhnqfihqsinssims
ttncvtlsfslylcclfikpkpinistttnqtnk***kkkkknqtffklkkkk*ikkkkn
nnnn


Frame B:
pfiffskdhrsviktliqtvhlvksvay*vknglkslqrtkrntrn*plkirrdgnskrk
tmmkn*kpkvkqnlhpivlmkviklli*ftqlfvttitiiiiiiiiinsfinqsihpscl
qptvslslslstfvvyl*npnqstfqplptkqinnnkkkkkktklfln*krknk*kkkki
iii


Frame C:
hssfsqrttdq*sklssklfiw*nr*lirsrmg*nlcrgqkeireisr*r*eemgtrkek
l**kiknpkssrifir*f**k*lnf*fnslnylspllpssss*ss*sihssinqfihhvy
nqlchslflslpllfiyktqtnqhfnhyqpnk*iiikkkkkkpnff*ikkekinkkkkk*
***
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSA790 (VSA790Q) /CSM/VS/VSA7-D/VSA790Q.Seq.d/                        339   3e-92
VSD226 (VSD226Q) /CSM/VS/VSD2-B/VSD226Q.Seq.d/                        325   4e-88
VSC488 (VSC488Q) /CSM/VS/VSC4-D/VSC488Q.Seq.d/                        325   4e-88
SSM615 (SSM615Q) /CSM/SS/SSM6-A/SSM615Q.Seq.d/                        325   4e-88
SSK552 (SSK552Q) /CSM/SS/SSK5-C/SSK552Q.Seq.d/                        325   4e-88
SSJ422 (SSJ422Q) /CSM/SS/SSJ4-A/SSJ422Q.Seq.d/                        325   4e-88
SSF827 (SSF827Q) /CSM/SS/SSF8-B/SSF827Q.Seq.d/                        325   4e-88
VSE334 (VSE334Q) /CSM/VS/VSE3-B/VSE334Q.Seq.d/                        317   1e-85
SSC417 (SSC417Q) /CSM/SS/SSC4-A/SSC417Q.Seq.d/                        281   5e-75
SSH724 (SSH724Q) /CSM/SS/SSH7-A/SSH724Q.Seq.d/                        182   4e-45
own update 2001. 3.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC145061|AC145061.15 Medicago truncatula clone mth2-6a18, WORKING DRAFT SEQUENCE, 30 unordered pieces.    32   0.087  12
AY484465|AY484465.1 Dictyostelium discoideum kinesin family member 12 gene, complete cds.    32   0.10   5
AC024288|AC024288.9 Homo sapiens, clone RP11-23B5, complete sequence.    48   0.13   1
BG540958|BG540958.1 602570112F1 NIH_MGC_77 Homo sapiens cDNA clone IMAGE:4694450 5', mRNA sequence.    48   0.13   1
BX102487|BX102487.1 RZPD Homo sapiens cDNA clone IMAGp998P024515 = IMAGE:1845745 5' EST.    48   0.13   1
AI217790|AI217790.1 qh25h01.x1 Soares_NFL_T_GBC_S1 Homo sapiens cDNA clone IMAGE:1845745 3', mRNA sequence.    48   0.13   1
BX511068|BX511068.3 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone.    36   0.16   7
AC137982|AC137982.2 Mus musculus chromosome UNK clone RP24-313G24, WORKING DRAFT SEQUENCE, 14 unordered pieces.    36   0.27   7
AC098904|AC098904.10 Rattus norvegicus clone CH230-164O24, WORKING DRAFT SEQUENCE, 1 ordered piece.    36   0.28   2
AC112467|AC112467.5 Rattus norvegicus clone CH230-127O13, WORKING DRAFT SEQUENCE, 1 ordered piece.    36   0.28   2
dna update 2004. 3.14
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR380954_369(CR380954|pid:none) Candida glabrata strain CBS138 c...    57   4e-07
(Q9UVL1) RecName: Full=Non-histone chromosomal protein 6;  &AF19...    57   4e-07
FM992691_147(FM992691|pid:none) Candida dubliniensis CD36 chromo...    57   4e-07
(Q6BRB4) RecName: Full=Non-histone chromosomal protein 6;  &CR38...    55   1e-06
AM270016_26(AM270016|pid:none) Aspergillus niger contig An02c021...    55   2e-06
Z35957_3(Z35957|pid:none) S.cerevisiae chromosome II reading fra...    54   2e-06
(Q5B995) RecName: Full=Non-histone chromosomal protein 6;              54   4e-06
(Q4WY33) RecName: Full=Non-histone chromosomal protein 6;              54   4e-06
CU633867_142(CU633867|pid:none) Podospora anserina genomic DNA c...    53   5e-06
AM920428_902(AM920428|pid:none) Penicillium chrysogenum Wisconsi...    52   8e-06
protein update 2009. 7.27
PSORT 

 psg: 0.75  gvh: 0.46  alm: 0.55  top: 0.53  tms: 0.00  mit: 0.31  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 28.0 %: cytoplasmic
	 24.0 %: mitochondrial
	 24.0 %: nuclear
	 16.0 %: cytoskeletal
	  4.0 %: peroxisomal
	  4.0 %: endoplasmic reticulum

>> prediction for VSA790 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID VSA790E
Full length Seq. 
>VSA790E.Seq
ACCATTCATCTTTTTCTCAAAGGACCACAGATCAGTAATCAAAACTCTCATCCAAACTGT
TCATTTGGTGAAATCGGTAGCTTATTAGGTCAAGAATGGGCTAAAATCTCTGCAGAGGAC
AAAAAGAAATACGAGAAATTAGCCGCTGAAGATAAGAAGAGATGGGAACTCGAAAAGAAA
AACTATGATGAAAAATTAAAAACCCAAAGTCAAGCAGAATCTTCATCCGATAGTTCTGAT
GAAAGTGATTAAACTTTTAATTTAATTCACTCAATTATTTGTCACCACTATTACCATCAT
CATCATCATAATCATCATAATCAATTCATTCATCAATCAATCAATTCATCCATCATGTCT
ACAACCAACTGTGTCACTCTCTCTTTCTCTCTCTACCTTTGTTGTTTATTTATAAAACCC
AAACCAATCAACATTTCAACCACTACCAACCAAACAAATAAATAATAATAAAAAAAAAAA
AAAAAAAACCAAACTTTTTTTAAATTAAAAAAGAAAAAATAAATAAAAAAAAAAAAAAAT
AATAATAATAAT
Length of full length seq. 552