>VSB269 (VSB269Q) /CSM/VS/VSB2-C/VSB269Q.Seq.d/
AATGGATAAAGCTGCCGTCGTTGTTCGTACCAGAAAGGTCTTAACCAACCGTCTCCTCTC
AAGAAAGCAATTCGTTGTCGAAGTTGTTCACCCAGGTAAAGCCAACGTCTCCAAAAAAGA
NTTANAAACCACCATTGCTAAACTCCACAAAGTTGCTGACCCAGAAACCATATTCCTCTT
TGGTTTCAAGACTGACTTCGGTGGTGGTAAATCAACTGGTTTCGGTTTAATCTATGACAA
CTTAGAAATTGCCAAGAAATACGAACCAAAATACCGTCTTGCACGTGCTGGTTTATACAC
TAAACCACAAACCTCAAGAAAACAAAGAAAGGAAAAGAAGAACCGTTTAAAGAAAGCTGG
CAAGAAAACCGCCAAAAAAATAAACTTATTAGTAATAATAAATAATTTTTACTTTAAACA
AAAAAAAAAAAAAAAAAAAAAA

MDKAAVVVRTRKVLTNRLLSRKQFVVEVVHPGKANVSKKXLXTTIAKLHKVADPETIFLF
GFKTDFGGGKSTGFGLIYDNLEIAKKYEPKYRLARAGLYTKPQTSRKQRKEKKNRLKKAG
KKTAKKINLLVIINNFYFKQKKKKKKK

Frame A:
ng*scrrcsyqkglnqpsplkkaircrscspr*sqrlqkrxxnhhc*tpqsc*prnhipl
wfqd*lrww*inwfrfnl*qlrncqeirtkipsctcwfih*ttnlkktkkgkeepfkesw
qenrqknklisnnk*fll*tkkkkkkk


Frame B:
MDKAAVVVRTRKVLTNRLLSRKQFVVEVVHPGKANVSKKXLXTTIAKLHKVADPETIFLF
GFKTDFGGGKSTGFGLIYDNLEIAKKYEPKYRLARAGLYTKPQTSRKQRKEKKNRLKKAG
KKTAKKINLLVIINNFYFKQKKKKKKK


Frame C:
wiklpslfvpers*ptvssqesnslsklftqvkptspkkxxkppllnstklltqkpyssl
vsrltsvvvnqlvsv*smtt*klprntnqntvlhvlvytlnhkpqenkerkrrtv*rkla
rkppkk*ty****iiftlnkkkkkkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSB269 (VSB269Q) /CSM/VS/VSB2-C/VSB269Q.Seq.d/                        777   0.0
VSK228 (VSK228Q) /CSM/VS/VSK2-B/VSK228Q.Seq.d/                        759   0.0
VSK217 (VSK217Q) /CSM/VS/VSK2-A/VSK217Q.Seq.d/                        759   0.0
VSH777 (VSH777Q) /CSM/VS/VSH7-D/VSH777Q.Seq.d/                        759   0.0
VSG806 (VSG806Q) /CSM/VS/VSG8-A/VSG806Q.Seq.d/                        759   0.0
VSG303 (VSG303Q) /CSM/VS/VSG3-A/VSG303Q.Seq.d/                        759   0.0
VSF468 (VSF468Q) /CSM/VS/VSF4-C/VSF468Q.Seq.d/                        759   0.0
VSB755 (VSB755Q) /CSM/VS/VSB7-C/VSB755Q.Seq.d/                        759   0.0
VSB649 (VSB649Q) /CSM/VS/VSB6-C/VSB649Q.Seq.d/                        759   0.0
VHA141 (VHA141Q) /CSM/VH/VHA1-B/VHA141Q.Seq.d/                        759   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116101|AC116101.2 Dictyostelium discoideum chromosome 2 map complement(427476-387492) strain AX4, complete sequence.   549   0.0    4
AX831130|AX831130.1 Sequence 1850 from Patent WO03072602.          38   1e-10  4
AX820100|AX820100.1 Sequence 1850 from Patent EP1338608.           38   1e-10  4
CD854601|CD854601.1 DH0AMM31ZH07ZZM1 HaDevR6 Helianthus annuus cDNA clone HaDevR631H07, mRNA sequence.    64   2e-10  2
CD851112|CD851112.1 DH0AL6ZD04ZM1 HaDevR5 Helianthus annuus cDNA clone HaDevR56D04, mRNA sequence.    60   2e-10  2
CD852704|CD852704.1 DH0ALL8ZE02ZZM1 HaDevR5 Helianthus annuus cDNA clone HaDevR58E02, mRNA sequence.    60   2e-10  2
CD852227|CD852227.1 DH0ALL25ZH05ZZM1 HaDevR5 Helianthus annuus cDNA clone HaDevR525H05, mRNA sequence.    60   2e-10  2
CD849914|CD849914.1 DH0AC026ZF01FM1 HaDevR2 Helianthus annuus cDNA clone HaDevR2026F01, mRNA sequence.    60   2e-10  2
CD851507|CD851507.1 DH0ALL14ZD08ZZM1 HaDevR5 Helianthus annuus cDNA clone HaDevR514D08, mRNA sequence.    64   2e-10  2
CD855754|CD855754.1 DH0AF23ZG02ZM1 HaDevR7 Helianthus annuus cDNA clone HaDevR723G02, mRNA sequence.    60   2e-10  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q75K27) RecName: Full=40S ribosomal protein S24;  &AC114258_4(A...   204   6e-52
EF081813_1(EF081813|pid:none) Picea sitchensis clone WS02710_A05...   148   5e-35
BT071133_1(BT071133|pid:none) Picea sitchensis clone WS02772_L06...   146   3e-34
CS726449_1(CS726449|pid:none) Sequence 59 from Patent WO20071037...   144   7e-34
EF145780_1(EF145780|pid:none) Populus trichocarpa clone WS0113_F...   142   4e-33
FB867894_1(FB867894|pid:none) Sequence 87167 from Patent WO20080...   142   4e-33
AC135565_5(AC135565|pid:none) Medicago truncatula clone mth2-19b...   142   5e-33
FB867896_1(FB867896|pid:none) Sequence 87169 from Patent WO20080...   141   6e-33
EF145627_1(EF145627|pid:none) Populus trichocarpa clone WS0112_C...   140   1e-32
EF144614_1(EF144614|pid:none) Populus trichocarpa clone WS01111_...   138   7e-32

 psg: 0.61  gvh: 0.29  alm: 0.51  top: 0.53  tms: 0.00  mit: 0.41  mip: 0.05
 nuc: 0.41  erl: 0.00  erm: 0.80  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 64.0 %: nuclear
	 20.0 %: mitochondrial
	 12.0 %: cytoplasmic
	  4.0 %: peroxisomal

>> prediction for VSB269 is nuc

>VSB269E.Seq
AATGGATAAAGCTGCCGTCGTTGTTCGTACCAGAAAGGTCTTAACCAACCGTCTCCTCTC
AAGAAAGCAATTCGTTGTCGAAGTTGTTCACCCAGGTAAAGCCAACGTCTCCAAAAAAGA
NTTANAAACCACCATTGCTAAACTCCACAAAGTTGCTGACCCAGAAACCATATTCCTCTT
TGGTTTCAAGACTGACTTCGGTGGTGGTAAATCAACTGGTTTCGGTTTAATCTATGACAA
CTTAGAAATTGCCAAGAAATACGAACCAAAATACCGTCTTGCACGTGCTGGTTTATACAC
TAAACCACAAACCTCAAGAAAACAAAGAAAGGAAAAGAAGAACCGTTTAAAGAAAGCTGG
CAAGAAAACCGCCAAAAAAATAAACTTATTAGTAATAATAAATAATTTTTACTTTAAACA
AAAAAAAAAAAAAAAAAAAAAA