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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSB318
Library VS
(Link to library)
Clone ID VSB318
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16468-1
Original site URL
Representative seq. ID VSB318E
(Link to Original site)
Representative DNA sequence 
>VSB318 (VSB318Q) /CSM/VS/VSB3-A/VSB318Q.Seq.d/
CTGAACAACAACAAATAAATAATAAAATGTCCAAAACTGCAGTTTGTGTAATTAAAGGTG
AAAAAGTTAACGGTGTTGTTAAATTCACTCAAGAAAATAAAGACTCACCAGTCACTGTTA
ATTATGATATCACTGGTTTAGAAAAAGGTGAACACGGTTTCCACGTTCATGCTTTTGGTG
ATACAACCAATGGTTGTGTTAGTGCTGGTCCACATTTTAACCCATTTGGTAAAAATCATG
GTGCTCCATCAGATGAAGATCGTCATGTTGGTGATTTAGGTAACATTGTTGCCGATGGTG
AGTCAAATACCAAAGGTACCATCAGTGATAAAATTATCTCCCTCTTTGGTGAACACACAA
TCGTTGGTAGAACTATGGTTGTCCATGCTGATCAAGATGATTTAGGTAAAGGTGGTAAAC
CAGATTCCTTAACTACTGGTGCTGCTGGTGCTCGTCTTGGTTGTGGTGTCATTGGTGTCT
CTCAATAAATTTCAAACTAAAATAAAACCCTGTTAAATATAAAAAAAA
sequence update 2000. 3.16
Translated Amino Acid sequence 
EQQQINNKMSKTAVCVIKGEKVNGVVKFTQENKDSPVTVNYDITGLEKGEHGFHVHAFGD
TTNGCVSAGPHFNPFGKNHGAPSDEDRHVGDLGNIVADGESNTKGTISDKIISLFGEHTI
VGRTMVVHADQDDLGKGGKPDSLTTGAAGARLGCGVIGVSQ*isn*nktllnikk
Translated Amino Acid sequence (All Frames) 
Frame A:
lnnnk*iikcpklqfv*lkvkkltvllnslkkikthqsllimislv*kkvntvstfmllv
iqpmvvlvlvhilthlvkimvlhqmkivmlvi*vtllpmvsqipkvpsviklspslvntq
slvelwlsmlikmi*vkvvnqip*llvllvlvlvvvslvslnkfqtkikpc*i*kk


Frame B:
*tttnk**nvqncslcn*r*ks*rcc*ihsrk*rltshc*l*yhwfrkr*trfprscfw*
ynqwlc*cwstf*piw*kswcsir*rsscw*fr*hccrw*vkyqryhq**nylplw*thn
rw*nygcpc*sr*fr*rw*trflnywccwcsswlwchwclsinfklk*npvkykk


Frame C:
EQQQINNKMSKTAVCVIKGEKVNGVVKFTQENKDSPVTVNYDITGLEKGEHGFHVHAFGD
TTNGCVSAGPHFNPFGKNHGAPSDEDRHVGDLGNIVADGESNTKGTISDKIISLFGEHTI
VGRTMVVHADQDDLGKGGKPDSLTTGAAGARLGCGVIGVSQ*isn*nktllnikk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSI439 (VSI439Q) /CSM/VS/VSI4-B/VSI439Q.Seq.d/                       1031   0.0
VSE508 (VSE508Q) /CSM/VS/VSE5-A/VSE508Q.Seq.d/                       1031   0.0
VSD473 (VSD473Q) /CSM/VS/VSD4-D/VSD473Q.Seq.d/                       1031   0.0
VSD215 (VSD215Q) /CSM/VS/VSD2-A/VSD215Q.Seq.d/                       1031   0.0
VSC137 (VSC137Q) /CSM/VS/VSC1-B/VSC137Q.Seq.d/                       1031   0.0
VSB318 (VSB318Q) /CSM/VS/VSB3-A/VSB318Q.Seq.d/                       1031   0.0
VSA653 (VSA653Q) /CSM/VS/VSA6-C/VSA653Q.Seq.d/                       1031   0.0
VSA494 (VSA494Q) /CSM/VS/VSA4-D/VSA494Q.Seq.d/                       1031   0.0
SSB295 (SSB295Q) /CSM/SS/SSB2-D/SSB295Q.Seq.d/                       1031   0.0
AFM434 (AFM434Q) /CSM/AF/AFM4-B/AFM434Q.Seq.d/                       1031   0.0
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AF092899|AF092899.1 Dictyostelium discoideum superoxide dismutase (sod) mRNA, partial cds.   908   0.0    1
AF046872|AF046872.1 Candida albicans Cu,Zn-superoxide dismutase (sod1) gene, complete cds.    84   6e-22  3
BI504265|BI504265.1 BB170002B10H04.5 Bee Brain Normalized/Subtracted Library, BB17 Apis mellifera cDNA clone BB170002B10H04 5', mRNA sequence.    50   3e-18  4
BI511643|BI511643.1 BB160006B10B07.5 Bee Brain Normalized Library, BB16 Apis mellifera cDNA clone BB160006B10B07 5', mRNA sequence.    50   6e-18  4
BI515784|BI515784.1 BB160020B10A04.5 Bee Brain Normalized Library, BB16 Apis mellifera cDNA clone BB160020B10A04 5', mRNA sequence.    50   8e-18  4
BI515107|BI515107.1 BB160017A20B12.5 Bee Brain Normalized Library, BB16 Apis mellifera cDNA clone BB160017A20B12 5', mRNA sequence.    50   1e-17  4
AY329355|AY329355.1 Apis mellifera ligustica CuZn superoxide dismutase (Sod1) mRNA, complete cds.    50   1e-17  4
BI515879|BI515879.1 BB160020B20B02.5 Bee Brain Normalized Library, BB16 Apis mellifera cDNA clone BB160020B20B02 5', mRNA sequence.    48   2e-14  4
BI516231|BI516231.1 BB160021B20F03.5 Bee Brain Normalized Library, BB16 Apis mellifera cDNA clone BB160021B20F03 5', mRNA sequence.    48   2e-14  4
AJ581746|AJ581746.1 Mytilus edulis mRNA for superoxide dismutase (sod gene).    46   7e-13  4
dna update 2004. 1.22
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q55GQ5) RecName: Full=Superoxide dismutase [Cu-Zn] 1;          ...   318   5e-86
BC167137_1(BC167137|pid:none) Xenopus tropicalis hypothetical pr...   234   1e-60
AK339927_1(AK339927|pid:none) Acyrthosiphon pisum ACYPI007471 mR...   204   1e-51
DQ886903_1(DQ886903|pid:none) Argas monolakensis superoxide-dism...   201   1e-50
(Q07182) RecName: Full=Superoxide dismutase [Cu-Zn];          EC...   199   4e-50
AY449747_1(AY449747|pid:none) Haliotis diversicolor supertexta C...   197   1e-49
EF070566_1(EF070566|pid:none) Maconellicoccus hirsutus clone WHM...   197   1e-49
(Q9U4X3) RecName: Full=Superoxide dismutase [Cu-Zn];          EC...   197   1e-49
(O73872) RecName: Full=Superoxide dismutase [Cu-Zn];          EC...   196   2e-49
(P07632) RecName: Full=Superoxide dismutase [Cu-Zn];          EC...   196   2e-49
protein update 2009. 7.28
PSORT 

 psg: 0.81  gvh: 0.27  alm: 0.41  top: 0.53  tms: 0.00  mit: 0.19  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 40.0 %: nuclear
	  8.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for VSB318 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID VSB318E
Full length Seq. 
>VSB318E.Seq
CTGAACAACAACAAATAAATAATAAAATGTCCAAAACTGCAGTTTGTGTAATTAAAGGTG
AAAAAGTTAACGGTGTTGTTAAATTCACTCAAGAAAATAAAGACTCACCAGTCACTGTTA
ATTATGATATCACTGGTTTAGAAAAAGGTGAACACGGTTTCCACGTTCATGCTTTTGGTG
ATACAACCAATGGTTGTGTTAGTGCTGGTCCACATTTTAACCCATTTGGTAAAAATCATG
GTGCTCCATCAGATGAAGATCGTCATGTTGGTGATTTAGGTAACATTGTTGCCGATGGTG
AGTCAAATACCAAAGGTACCATCAGTGATAAAATTATCTCCCTCTTTGGTGAACACACAA
TCGTTGGTAGAACTATGGTTGTCCATGCTGATCAAGATGATTTAGGTAAAGGTGGTAAAC
CAGATTCCTTAACTACTGGTGCTGCTGGTGCTCGTCTTGGTTGTGGTGTCATTGGTGTCT
CTCAATAAATTTCAAACTAAAATAAAACCCTGTTAAATATAAAAAAAA
Length of full length seq. 528