>AHA210 (AHA210Q) /CSM/AH/AHA2-A/AHA210Q.Seq.d/
ATTAGAAAAACTTGATTGGTATAAAGAAATTGATTCAAAATTTTCATCAAATTGGATGAA
AATTATAAAAAAAGATTTACCAAAAGCTTGTAAAAAGTATTCAGATATTCATATGAATGG
TATTGCCAATTGTAAAAAAATAGCTCAAATGATGAAACGAGAATTAAAGATAAAGAACCA
AAAGCCACCAAAAGCAACCAAAGATAATCAAATACGTGCAAAGAAATTGGTAAAGGAAAT
GGGTGCCTATTGGAGAAAGTTTGATAAAGATGAGAGAGAAGCTAAAAGAAGAGCAGAGAA
AGAGGAAGCAAATCAAAGAAAACGTGAAGAAGAAGTACAAGAAGCAAAGAGACAACAAAG
AAAACTTAATTTCCTTATCTCACAAACTGAACTCTATAGCCATTTCATGAGTAAAAAATT
GGATGATCCATCAAGTGGCGATGCCACTCCCGCTACTATTGGTTCATTAATGAATGGATC
ACAAATGCCAACTGAACAGAATAAAAAAATCAAAGAAAAGAATGATCAAGACGACAATGA
ATCATCATCTGAGGAAGAAGAGGAATCATCTGATGATGAGGGTAAAACTGAAXXXXXXXX
XX

LEKLDWYKEIDSKFSSNWMKIIKKDLPKACKKYSDIHMNGIANCKKIAQMMKRELKIKNQ
KPPKATKDNQIRAKKLVKEMGAYWRKFDKDEREAKRRAEKEEANQRKREEEVQEAKRQQR
KLNFLISQTELYSHFMSKKLDDPSSGDATPATIGSLMNGSQMPTEQNKKIKEKNDQDDNE
SSSEEEEESSDDEGKT---

Frame A:
irkt*lv*rn*fkifikldenykkrftksl*kvfrysyewycql*knssndetrikdkep
katksnqr*sntckeigkgngcllekv**r*ers*kksrergskskkt*rrstrskettk
kt*fpyltn*tl*pfhe*kig*sikwrchsryywfinewitnan*te*knqrke*srrq*
iii*grrgii***g*n*---


Frame B:
LEKLDWYKEIDSKFSSNWMKIIKKDLPKACKKYSDIHMNGIANCKKIAQMMKRELKIKNQ
KPPKATKDNQIRAKKLVKEMGAYWRKFDKDEREAKRRAEKEEANQRKREEEVQEAKRQQR
KLNFLISQTELYSHFMSKKLDDPSSGDATPATIGSLMNGSQMPTEQNKKIKEKNDQDDNE
SSSEEEEESSDDEGKT---


Frame C:
*knligikkliqnfhqig*kl*kkiyqklvksiqifi*mvlpivkk*lk**nen*r*rtk
shqkqpkiikyvqrnw*rkwvpigeslikmreklkeeqrkrkqikenvkkkykkqrdnke
nlislshklnsiais*vknwmihqvamplplllvh**mdhkcqlnrikkskkrmikttmn
hhlrkkrnhlmmrvkl---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AHA210 (AHA210Q) /CSM/AH/AHA2-A/AHA210Q.Seq.d/                        440   e-122
SHK101 (SHK101Q) /CSM/SH/SHK1-A/SHK101Q.Seq.d/                        438   e-122
CHH319 (CHH319Q) /CSM/CH/CHH3-A/CHH319Q.Seq.d/                        438   e-122
AHJ104 (AHJ104Q) /CSM/AH/AHJ1-A/AHJ104Q.Seq.d/                        438   e-122
SHJ737 (SHJ737Q) /CSM/SH/SHJ7-B/SHJ737Q.Seq.d/                        416   e-115
SHB647 (SHB647Q) /CSM/SH/SHB6-B/SHB647Q.Seq.d/                        287   1e-76
AHC691 (AHC691Q) /CSM/AH/AHC6-D/AHC691Q.Seq.d/                        266   4e-70
SHD417 (SHD417Q) /CSM/SH/SHD4-A/SHD417Q.Seq.d/                        202   4e-51
SLB178 (SLB178Q) /CSM/SL/SLB1-D/SLB178Q.Seq.d/                         44   0.002
SHA810 (SHA810Q) /CSM/SH/SHA8-A/SHA810Q.Seq.d/                         44   0.002

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AW672445|AW672445.1 LG1_359_D02.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNAsequence.    48   0.15   1
AW672408|AW672408.1 LG1_359_D02.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA sequence.    48   0.15   1
CF070883|CF070883.1 FE1_14_H12.b1_A002 Iron-deficient seedlings Sorghum bicolor cDNA clone FE1_14_H12_A002 3', mRNA sequence.    48   0.15   1
BF176687|BF176687.1 EM1_1_H08.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA sequence.    48   0.15   1
AC013258|AC013258.5 Arabidopsis thaliana chromosome 1 BAC F9E10 genomic sequence, complete sequence.    36   0.24   6
AC022288|AC022288.5 Arabidopsis thaliana chromosome 1 BAC T3M13 genomic sequence, complete sequence.    34   0.34   4
BZ737384|BZ737384.1 OGFBV79TM ZM_0.7_1.5_KB Zea mays genomic clone ZMMBMa0248N14, DNA sequence.    32   0.40   2
CA205726|CA205726.1 SCCCFL3003C08.g Saccharum officinarum FL3 Saccharum officinarum cDNA clone SCCCFL3003C08 5', mRNA sequence.    46   0.57   1
CA200617|CA200617.1 SCRUFL1015F02.g FL1 Saccharum officinarum cDNA clone SCRUFL1015F02 5', mRNA sequence.    46   0.57   1
CA213107|CA213107.1 SCQGSB1137D09.g SB1 Saccharum officinarum cDNA clone SCQGSB1137D09 5', mRNA sequence.    46   0.57   1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL844862_2(AL844862|pid:none) Mouse DNA sequence from clone RP23...    96   6e-19
AB033085_1(AB033085|pid:none) Homo sapiens mRNA for KIAA1259 pro...    95   1e-18
(Q9ULG1) RecName: Full=Putative DNA helicase INO80 complex homol...    95   1e-18
AL929049_3(AL929049|pid:none) Zebrafish DNA sequence from clone ...    90   4e-17
AM920427_717(AM920427|pid:none) Penicillium chrysogenum Wisconsi...    88   2e-16
AY069786_1(AY069786|pid:none) Drosophila melanogaster SD02886 fu...    87   4e-16
(Q9VDY1) RecName: Full=Putative DNA helicase Ino80;          Sho...    87   4e-16
(A7EQA8) RecName: Full=Putative DNA helicase INO80;          EC=...    86   1e-15
(Q4IL82) RecName: Full=Putative DNA helicase INO80;          EC=...    84   4e-15
(Q5BAZ5) RecName: Full=Putative DNA helicase ino80;          EC=...    83   5e-15

 psg: 0.75  gvh: 0.12  alm: 0.59  top: 0.53  tms: 0.00  mit: 0.18  mip: 0.00
 nuc: 0.12  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: nuclear
	 36.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial

>> prediction for AHA210 is nuc

>AHA210F.Seq
ATTAGAAAAACTTGATTGGTATAAAGAAATTGATTCAAAATTTTCATCAAATTGGATGAA
AATTATAAAAAAAGATTTACCAAAAGCTTGTAAAAAGTATTCAGATATTCATATGAATGG
TATTGCCAATTGTAAAAAAATAGCTCAAATGATGAAACGAGAATTAAAGATAAAGAACCA
AAAGCCACCAAAAGCAACCAAAGATAATCAAATACGTGCAAAGAAATTGGTAAAGGAAAT
GGGTGCCTATTGGAGAAAGTTTGATAAAGATGAGAGAGAAGCTAAAAGAAGAGCAGAGAA
AGAGGAAGCAAATCAAAGAAAACGTGAAGAAGAAGTACAAGAAGCAAAGAGACAACAAAG
AAAACTTAATTTCCTTATCTCACAAACTGAACTCTATAGCCATTTCATGAGTAAAAAATT
GGATGATCCATCAAGTGGCGATGCCACTCCCGCTACTATTGGTTCATTAATGAATGGATC
ACAAATGCCAACTGAACAGAATAAAAAAATCAAAGAAAAGAATGATCAAGACGACAATGA
ATCATCATCTGAGGAAGAAGAGGAATCATCTGATGATGAGGGTAAAACTGAANNNNNNNN
NN