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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSD704
Library VS
(Link to library)
Clone ID VSD704
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16583-1
Original site URL
Representative seq. ID VSD704P
(Link to Original site)
Representative DNA sequence 
>VSD704 (VSD704Q) /CSM/VS/VSD7-A/VSD704Q.Seq.d/
CCCACGCCGTCCGGATAATTTTCAAAATGAGCGGAAAGAAAGAAGTCAAAGCCCCAAAAG
TTGTTGAAGCTTTATCAGCCAAAATCCCATGTGGTCCAAGTGAATTAGTCTTTGGTGTTG
CCCATATCTTCGCCTCATTCAATGATACCTTTGTCCACGTCACTGATTTATCCTCAAAAG
AAACCATTGTTCGTGTTACTGGTGGTATGAAAGTTAAAACCGATCGTGATGAATCTTCAC
CATACGCTGCCACCATGGCCGCTCAAGATGTCGCCCTCCGTTGTAAAGAACTCGGTGTCA
CTGCTCTCCATATTAAATTAAGAGCTACCGGTGGTAATGGTTCAAAGACCCCAGGTCCAG
GTGCTCAATCTGCCCTCAGAGCTTTAGCTCGTTCAGGTATGAGAATTGGTCGTATTGAAG
ATGTTACCCCAATTCCAACTGATTCAACCAGAAGAAAGAGCGGTCATCGTGGTAGACGTT
TATAAACATTTGGATCTCATCATTTCAAGTGCTTTTTTAATAATAATACTACAACCTTTT
TAATTTTAAAAAAAACCAAAAAAAAAAACAXXXXXXXXXXCCACGCGTCCCGCCCACGCG
TNCCGGATAATTTTCAAAATGAGCGGAAANAAAGAAGTCAAAGCCCCAAAAGTTGTTNAA
GCTTTATCAGCCAAAATCCCATGTGGTCCAAGTGAATTAGTCTTTGGTGTTGCCCATATN
TTCGCCTCATTCAATGATACCTTTGTCCACGTCACTGATTTATCCTCAAAANAAACCATT
GTTNGTGTTACTGGTGGTATGAAAGTTAAAACCGATCGTGATGAATNTTCACCATACGCT
GCCACCATGGCCGCTCAANATGTCGCCCTCCGTTGTAAANAACTCGGTGTCACTGCTCTC
CATATTAAATTAANAGCTACCGGTGGTAATGGTTCAAAGACCCCAGGNCCAGGTGCTCAA
TCTGCCCTCANAGCTTTAGCTCGTTCAGGTATGAGAATTGGTCGTATTGAAGATGTTACC
CCAATTCCAACTGATTCAACCAGAAGAAAGAGCGGTCATCGTGGTANACGTTTANAAACA
TTTGGATCTCATCANTCAAGTGCTTTTTTAATAATAANACTACAACCTTTTTAATTTTAA
AAAAAACCAAAAAAAAAAACAATTTGTTTTAATACAACAACAACTCTAATAAAATAGGTA
TNNATTCAAATTTT
sequence update 2001. 3.22
Translated Amino Acid sequence 
havriifkmsgkkevkapkvvealsakipcgpselvfgvahifasfndtfvhvtdlsske
tivrvtggmkvktdrdesspyaatmaaqdvalrckelgvtalhiklratggngsktpgpg
aqsalralarsgmrigriedvtpiptdstrrksghrgrrl*TFGSHHFKCFFNNNTTTFL
ILKKTKKKN---

---TRPAHAXRIIFKMSGXKEVKAPKVVXALSAKIPCGPSELVFGVAHXFASFNDTFVHV
TDLSSKXTIVXVTGGMKVKTDRDEXSPYAATMAAQXVALRCKXLGVTALHIKLXATGGNG
SKTPGPGAQSALXALARSGMRIGRIEDVTPIPTDSTRRKSGHRGXRLXTFGSHXSSAFLI
IXLQPF*f*kkpkkkticfnttttlik*vxiqi
Translated Amino Acid sequence (All Frames) 
Frame A:
ptpsg*fsk*aerkkskpqkllklyqpkshvvqvn*slvlpissphsmiplstsliypqk
kplfvllvv*klkpivmnlhhtlppwplkmspsvvknsvsllsiln*elpvvmvqrpqvq
vlnlpsel*lvqv*elvvlkmlpqfqliqpeeravivvdvykhldliissafliiilqpf
*f*kkpkkkt---

---prvpptrxg*fsk*aexkkskpqklxklyqpkshvvqvn*slvlpixsphsmiplst
sliypqxkplxvllvv*klkpivmnxhhtlppwplxmspsvvxnsvsllsiln*xlpvvm
vqrpqxqvlnlpsxl*lvqv*elvvlkmlpqfqliqpeeravivvxvxkhldlixqvlf*
**xynlfnfkknqkkkqfvliqqql**nryxfkf

Frame B:
prrpdnfqnerkersqspksc*sfisqnpmwsk*islwccpylrliq*ylcprh*filkr
nhcscywwyes*nrs**iftirchhgrsrcrppl*rtrchcspy*iksyrw*wfkdprsr
csicpqsfssfryenwsy*rcypnsn*fnqkkerssw*tfiniwissfqvlf***yynlf
nfkknqkkk---

---hasrprvpdnfqnerkxrsqspkscxsfisqnpmwsk*islwccpyxrliq*ylcpr
h*filkxnhcxcywwyes*nrs**xftirchhgrsxcrppl*xtrchcspy*ixsyrw*w
fkdprxrcsicpxsfssfryenwsy*rcypnsn*fnqkkersswxtfxniwissxkcffn
nxtttflilkktkkknnlf*ynnnsnkigxxsnf

Frame C:
havriifkmsgkkevkapkvvealsakipcgpselvfgvahifasfndtfvhvtdlsske
tivrvtggmkvktdrdesspyaatmaaqdvalrckelgvtalhiklratggngsktpgpg
aqsalralarsgmrigriedvtpiptdstrrksghrgrrl*TFGSHHFKCFFNNNTTTFL
ILKKTKKKN---

---TRPAHAXRIIFKMSGXKEVKAPKVVXALSAKIPCGPSELVFGVAHXFASFNDTFVHV
TDLSSKXTIVXVTGGMKVKTDRDEXSPYAATMAAQXVALRCKXLGVTALHIKLXATGGNG
SKTPGPGAQSALXALARSGMRIGRIEDVTPIPTDSTRRKSGHRGXRLXTFGSHXSSAFLI
IXLQPF*f*kkpkkkticfnttttlik*vxiqi
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSD704 (VSD704Q) /CSM/VS/VSD7-A/VSD704Q.Seq.d/                       1084   0.0
VSG611 (VSG611Q) /CSM/VS/VSG6-A/VSG611Q.Seq.d/                       1057   0.0
VSJ390 (VSJ390Q) /CSM/VS/VSJ3-D/VSJ390Q.Seq.d/                       1047   0.0
VSH243 (VSH243Q) /CSM/VS/VSH2-B/VSH243Q.Seq.d/                       1043   0.0
VSF876 (VSF876Q) /CSM/VS/VSF8-D/VSF876Q.Seq.d/                       1043   0.0
FC-BI06 (FC-BI06Q) /CSM/FC/FC-BI/FC-BI06Q.Seq.d/                     1043   0.0
FC-093 (FC-093Q) /CSM/CG/CG-FC/FC-093Q.Seq.d/                        1043   0.0
VSH639 (VSH639Q) /CSM/VS/VSH6-B/VSH639Q.Seq.d/                       1041   0.0
VSH511 (VSH511Q) /CSM/VS/VSH5-A/VSH511Q.Seq.d/                       1041   0.0
VSF230 (VSF230Q) /CSM/VS/VSF2-B/VSF230Q.Seq.d/                       1041   0.0
own update 2001.11.12
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU264430) Dictyostelium discoideum vegetative cDNA clone:VS...  1084   0.0    1
(AU284713) Dictyostelium discoideum gamete cDNA clone:FC-BI0...   973   0.0    3
(AU264431) Dictyostelium discoideum vegetative cDNA clone:VS...  1011   0.0    2
(C23683) Dictyostelium discoideum gamete cDNA, clone FC-AE08.     946   0.0    3
(AU267483) Dictyostelium discoideum vegetative cDNA clone:VS...   959   0.0    3
(AU284581) Dictyostelium discoideum gamete cDNA clone:FC-BD2...   938   0.0    3
(AU266659) Dictyostelium discoideum vegetative cDNA clone:VS...  1057   0.0    1
(AU264088) Dictyostelium discoideum vegetative cDNA clone:VS...   952   0.0    3
(AU264087) Dictyostelium discoideum vegetative cDNA clone:VS...   959   0.0    3
(AU270246) Dictyostelium discoideum vegetative cDNA clone:VS...  1019   0.0    2
dna update 2009. 7.23
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54EG3) RecName: Full=40S ribosomal protein S14;                     273   9e-72
HB438133_1(HB438133|pid:none) Sequence 951 from Patent WO2009077...   227   6e-58
BT070377_1(BT070377|pid:none) Picea sitchensis clone WS02725_B22...   227   7e-58
EU960087_1(EU960087|pid:none) Zea mays clone 221629 40S ribosoma...   227   7e-58
(P19950) RecName: Full=40S ribosomal protein S14; AltName: Full=...   227   7e-58
HB437497_1(HB437497|pid:none) Sequence 315 from Patent WO2009077...   226   1e-57
BT034561_1(BT034561|pid:none) Zea mays full-length cDNA clone ZM...   226   1e-57
HB437493_1(HB437493|pid:none) Sequence 311 from Patent WO2009077...   226   2e-57
EU285011_1(EU285011|pid:none) TSA: Elaeis guineensis EgEfMPOB001...   226   2e-57
EU976524_1(EU976524|pid:none) Zea mays clone 896801 40S ribosoma...   226   2e-57
protein update 2009. 7.30
PSORT 

 psg: 0.87  gvh: 0.24  alm: 0.42  top: 0.53  tms: 0.00  mit: 0.41  mip: 0.07
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.50  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 88.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: nuclear

>> prediction for VSD704 is cyt
5' end seq. ID VSD704F
5' end seq. 
>VSD704F.Seq
CCCACGCCGTCCGGATAATTTTCAAAATGAGCGGAAAGAAAGAAGTCAAAGCCCCAAAAG
TTGTTGAAGCTTTATCAGCCAAAATCCCATGTGGTCCAAGTGAATTAGTCTTTGGTGTTG
CCCATATCTTCGCCTCATTCAATGATACCTTTGTCCACGTCACTGATTTATCCTCAAAAG
AAACCATTGTTCGTGTTACTGGTGGTATGAAAGTTAAAACCGATCGTGATGAATCTTCAC
CATACGCTGCCACCATGGCCGCTCAAGATGTCGCCCTCCGTTGTAAAGAACTCGGTGTCA
CTGCTCTCCATATTAAATTAAGAGCTACCGGTGGTAATGGTTCAAAGACCCCAGGTCCAG
GTGCTCAATCTGCCCTCAGAGCTTTAGCTCGTTCAGGTATGAGAATTGGTCGTATTGAAG
ATGTTACCCCAATTCCAACTGATTCAACCAGAAGAAAGAGCGGTCATCGTGGTAGACGTT
TATAAACATTTGGATCTCATCATTTCAAGTGCTTTTTTAATAATAATACTACAACCTTTT
TAATTTTAAAAAAAACCAAAAAAAAAAACA----------
Length of 5' end seq. 570
3' end seq. ID VSD704Z
3' end seq. 
>VSD704Z.Seq
----------CCACGCGTCCCGCCCACGCGTNCCGGATAATTTTCAAAATGAGCGGAAAN
AAAGAAGTCAAAGCCCCAAAAGTTGTTNAAGCTTTATCAGCCAAAATCCCATGTGGTCCA
AGTGAATTAGTCTTTGGTGTTGCCCATATNTTCGCCTCATTCAATGATACCTTTGTCCAC
GTCACTGATTTATCCTCAAAANAAACCATTGTTNGTGTTACTGGTGGTATGAAAGTTAAA
ACCGATCGTGATGAATNTTCACCATACGCTGCCACCATGGCCGCTCAANATGTCGCCCTC
CGTTGTAAANAACTCGGTGTCACTGCTCTCCATATTAAATTAANAGCTACCGGTGGTAAT
GGTTCAAAGACCCCAGGNCCAGGTGCTCAATCTGCCCTCANAGCTTTAGCTCGTTCAGGT
ATGAGAATTGGTCGTATTGAAGATGTTACCCCAATTCCAACTGATTCAACCAGAAGAAAG
AGCGGTCATCGTGGTANACGTTTANAAACATTTGGATCTCATCANTCAAGTGCTTTTTTA
ATAATAANACTACAACCTTTTTAATTTTAAAAAAAACCAAAAAAAAAAACAATTTGTTTT
AATACAACAACAACTCTAATAAAATAGGTATNNATTCAAATTTT
Length of 3' end seq. 634
Connected seq. ID VSD704P
Connected seq. 
>VSD704P.Seq
CCCACGCCGTCCGGATAATTTTCAAAATGAGCGGAAAGAAAGAAGTCAAAGCCCCAAAAG
TTGTTGAAGCTTTATCAGCCAAAATCCCATGTGGTCCAAGTGAATTAGTCTTTGGTGTTG
CCCATATCTTCGCCTCATTCAATGATACCTTTGTCCACGTCACTGATTTATCCTCAAAAG
AAACCATTGTTCGTGTTACTGGTGGTATGAAAGTTAAAACCGATCGTGATGAATCTTCAC
CATACGCTGCCACCATGGCCGCTCAAGATGTCGCCCTCCGTTGTAAAGAACTCGGTGTCA
CTGCTCTCCATATTAAATTAAGAGCTACCGGTGGTAATGGTTCAAAGACCCCAGGTCCAG
GTGCTCAATCTGCCCTCAGAGCTTTAGCTCGTTCAGGTATGAGAATTGGTCGTATTGAAG
ATGTTACCCCAATTCCAACTGATTCAACCAGAAGAAAGAGCGGTCATCGTGGTAGACGTT
TATAAACATTTGGATCTCATCATTTCAAGTGCTTTTTTAATAATAATACTACAACCTTTT
TAATTTTAAAAAAAACCAAAAAAAAAAACA----------CCACGCGTCCCGCCCACGCG
TNCCGGATAATTTTCAAAATGAGCGGAAANAAAGAAGTCAAAGCCCCAAAAGTTGTTNAA
GCTTTATCAGCCAAAATCCCATGTGGTCCAAGTGAATTAGTCTTTGGTGTTGCCCATATN
TTCGCCTCATTCAATGATACCTTTGTCCACGTCACTGATTTATCCTCAAAANAAACCATT
GTTNGTGTTACTGGTGGTATGAAAGTTAAAACCGATCGTGATGAATNTTCACCATACGCT
GCCACCATGGCCGCTCAANATGTCGCCCTCCGTTGTAAANAACTCGGTGTCACTGCTCTC
CATATTAAATTAANAGCTACCGGTGGTAATGGTTCAAAGACCCCAGGNCCAGGTGCTCAA
TCTGCCCTCANAGCTTTAGCTCGTTCAGGTATGAGAATTGGTCGTATTGAAGATGTTACC
CCAATTCCAACTGATTCAACCAGAAGAAAGAGCGGTCATCGTGGTANACGTTTANAAACA
TTTGGATCTCATCANTCAAGTGCTTTTTTAATAATAANACTACAACCTTTTTAATTTTAA
AAAAAACCAAAAAAAAAAACAATTTGTTTTAATACAACAACAACTCTAATAAAATAGGTA
TNNATTCAAATTTT
Length of connected seq. 1204
Full length Seq ID -
Full length Seq. -
Length of full length seq. -