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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSI458
Library VS
(Link to library)
Clone ID VSI458
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID VSI458F
(Link to Original site)
Representative DNA sequence 
>VSI458 (VSI458Q) /CSM/VS/VSI4-C/VSI458Q.Seq.d/
AATAAATATTCATTGTATATAATAACTTTTTTTTTGTTTATTTAATAACAATTTCAAAAA
AAAAAXXXXXXXXXX
sequence update 2001. 3.22
Translated Amino Acid sequence 
*IFIVYNNFFFVYLITISKK---
Translated Amino Acid sequence (All Frames) 
Frame A:
nkyslyiitfflfi**qfqkk---


Frame B:
inihci**lffclfnnnfkkk---


Frame C:
*IFIVYNNFFFVYLITISKK---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSI458 (VSI458Q) /CSM/VS/VSI4-C/VSI458Q.Seq.d/                         56   6e-08
VSI448 (VSI448Q) /CSM/VS/VSI4-B/VSI448Q.Seq.d/                         56   6e-08
VSD371 (VSD371Q) /CSM/VS/VSD3-C/VSD371Q.Seq.d/                         56   6e-08
VHE843 (VHE843Q) /CSM/VH/VHE8-B/VHE843Q.Seq.d/                         56   6e-08
FC-AK24 (FC-AK24Q) /CSM/FC/FC-AK/FC-AK24Q.Seq.d/                       56   6e-08
SSA681 (SSA681Q) /CSM/SS/SSA6-D/SSA681Q.Seq.d/                         52   1e-06
VSD370 (VSD370Q) /CSM/VS/VSD3-C/VSD370Q.Seq.d/                         40   0.004
SSC778 (SSC778Q) /CSM/SS/SSC7-D/SSC778Q.Seq.d/                         32   0.94
FC-BN09 (FC-BN09Q) /CSM/FC/FC-BN/FC-BN09Q.Seq.d/                       32   0.94
FC-AH17 (FC-AH17Q) /CSM/FC/FC-AH/FC-AH17Q.Seq.d/                       32   0.94
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU268726) Dictyostelium discoideum vegetative cDNA clone:VS...    52   2e-10  2
(AU263920) Dictyostelium discoideum vegetative cDNA clone:VS...    52   3e-10  2
(AU268712) Dictyostelium discoideum vegetative cDNA clone:VS...    52   4e-10  2
(BJ420750) Dictyostelium discoideum cDNA clone:ddv40f12, 5' ...    52   7e-10  2
(AB038152) Dictyostelium discoideum Dd4E-BP mRNA for 4E-bind...    52   9e-10  2
(C22782) Dictyostelium discoideum gamete cDNA, clone FC-AK24.      52   9e-10  2
(CU463787) Drosophila DNA sequence from clone XX-CHORI221_29...    46   0.15   1
(CP000331) Drosophila melanogaster genomic scaffold 21100002...    46   0.15   1
(AC095639) Rattus norvegicus clone CH230-8K8, *** SEQUENCING...    44   0.57   1
(CN759575) ID0AAA25DG09RM1 ApMS Acyrthosiphon pisum cDNA clo...    42   2.3    1
dna update 2009. 7.20
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.307    0.125    0.342

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3019103
Number of Hits to DB: 47,217,436
protein update 2009. 3.24
PSORT -
5' end seq. ID VSI458F
5' end seq. 
>VSI458F.Seq
AATAAATATTCATTGTATATAATAACTTTTTTTTTGTTTATTTAATAACAATTTCAAAAA
AAAAA----------
Length of 5' end seq. 65
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -