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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSI586
Library VS
(Link to library)
Clone ID VSI586
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16468-1
Original site URL
Representative seq. ID VSI586F
(Link to Original site)
Representative DNA sequence 
>VSI586 (VSI586Q) /CSM/VS/VSI5-D/VSI586Q.Seq.d/
AAATAAATAATAAAATGTCCAAAACTGCAGTTTGTGTAATTAAAGGTGAAAAAGTTAACG
GTGTTGTTAAATTCACTCAAGAAAATAAAGACTCACCAGTCACTGTTAATTATGATATCA
CCTGGTTTAGAAAAAGGTGAACACGGTTTCCACGTTCATGCTTTTGGTGATACAACCAAT
GGTTGTGTTAGTGCTGGTCCACATTTTAACCCATTTGGTAAAAATCATGGTGCTCCATCA
GATGAAGATCGTCATGTTGGTGATTTAGGTAACATTGTTGCCGATGGTGAGTCAAATACC
AAAGGTACCATCAGTGATAAAATTATCTCCCTCTTTGGTGAACACACAATCGTTGGTAGA
ACTATGGTTGTCCATGCTGATCAAGATGATTTAGGTAAAGGTGGTAAACCAGATTCCTTA
ACTACTGGTGCTGCTGGTGCTCGTCTTGGTTGXXXXXXXXXX
sequence update 2001. 3.22
Translated Amino Acid sequence 
k*iikcpklqfv*LKVKKLTVLLNSLKKIKTHQSLLIMISPGLEKGEHGFHVHAFGDTTN
GCVSAGPHFNPFGKNHGAPSDEDRHVGDLGNIVADGESNTKGTISDKIISLFGEHTIVGR
TMVVHADQDDLGKGGKPDSLTTGAAGARLG---
Translated Amino Acid sequence (All Frames) 
Frame A:
k*iikcpklqfv*LKVKKLTVLLNSLKKIKTHQSLLIMISPGLEKGEHGFHVHAFGDTTN
GCVSAGPHFNPFGKNHGAPSDEDRHVGDLGNIVADGESNTKGTISDKIISLFGEHTIVGR
TMVVHADQDDLGKGGKPDSLTTGAAGARLG---


Frame B:
nk**nvqncslcn*r*ks*rcc*ihsrk*rltshc*l*yhlv*kkvntvstfmllviqpm
vvlvlvhilthlvkimvlhqmkivmlvi*vtllpmvsqipkvpsviklspslvntqslve
lwlsmlikmi*vkvvnqip*llvllvlvlv---


Frame C:
innkmsktavcvikgekvngvvkftqenkdspvtvnyditwfrkr*trfprscfw*ynqw
lc*cwstf*piw*kswcsir*rsscw*fr*hccrw*vkyqryhq**nylplw*thnrw*n
ygcpc*sr*fr*rw*trflnywccwcssw---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSI586 (VSI586Q) /CSM/VS/VSI5-D/VSI586Q.Seq.d/                        896   0.0
VSJ816 (VSJ816Q) /CSM/VS/VSJ8-A/VSJ816Q.Seq.d/                        880   0.0
VSJ789 (VSJ789Q) /CSM/VS/VSJ7-D/VSJ789Q.Seq.d/                        880   0.0
VSJ514 (VSJ514Q) /CSM/VS/VSJ5-A/VSJ514Q.Seq.d/                        880   0.0
VSI439 (VSI439Q) /CSM/VS/VSI4-B/VSI439Q.Seq.d/                        880   0.0
VSI406 (VSI406Q) /CSM/VS/VSI4-A/VSI406Q.Seq.d/                        880   0.0
VSH487 (VSH487Q) /CSM/VS/VSH4-D/VSH487Q.Seq.d/                        880   0.0
VSH236 (VSH236Q) /CSM/VS/VSH2-B/VSH236Q.Seq.d/                        880   0.0
VSG547 (VSG547Q) /CSM/VS/VSG5-B/VSG547Q.Seq.d/                        880   0.0
VSG361 (VSG361Q) /CSM/VS/VSG3-C/VSG361Q.Seq.d/                        880   0.0
own update 2001.11.13
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU268929) Dictyostelium discoideum vegetative cDNA clone:VS...   894   0.0    1
(AU268695) Dictyostelium discoideum vegetative cDNA clone:VS...   654   0.0    2
(BJ422074) Dictyostelium discoideum cDNA clone:ddv44b22, 5' ...   654   0.0    2
(AU263156) Dictyostelium discoideum vegetative cDNA clone:VS...   654   0.0    2
(BJ329517) Dictyostelium discoideum cDNA clone:dda25d10, 5' ...   654   0.0    2
(AU263663) Dictyostelium discoideum vegetative cDNA clone:VS...   654   0.0    2
(AU037082) Dictyostelium discoideum slug cDNA, clone SSB295.      654   0.0    2
(C90240) Dictyostelium discoideum slug cDNA, clone SSI445.        654   0.0    2
(BJ346851) Dictyostelium discoideum cDNA clone:dda25d10, 3' ...   654   0.0    2
(BJ352410) Dictyostelium discoideum cDNA clone:dda46m13, 3' ...   654   0.0    2
dna update 2009. 7.24
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q55GQ5) RecName: Full=Superoxide dismutase [Cu-Zn] 1;          ...   211   3e-70
BC167137_1(BC167137|pid:none) Xenopus tropicalis hypothetical pr...   157   1e-47
DQ886903_1(DQ886903|pid:none) Argas monolakensis superoxide-dism...   144   8e-39
AY428604_1(AY428604|pid:none) Brugia malayi superoxide dismutase...   139   4e-38
DQ377960_1(DQ377960|pid:none) Wuchereria bancrofti cytoplasmic C...   143   5e-38
(Q8J0N2) RecName: Full=Superoxide dismutase [Cu-Zn];          EC...   141   7e-38
EF070566_1(EF070566|pid:none) Maconellicoccus hirsutus clone WHM...   142   2e-37
AJ581746_1(AJ581746|pid:none) Mytilus edulis mRNA for superoxide...   141   2e-37
AY449747_1(AY449747|pid:none) Haliotis diversicolor supertexta C...   143   2e-37
(P41962) RecName: Full=Superoxide dismutase [Cu-Zn];          EC...   140   4e-37
protein update 2009. 3.24
PSORT 

 psg: 0.87  gvh: 0.48  alm: 0.42  top: 0.50  tms: 0.00  mit: 0.31  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 32.0 %: nuclear
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for VSI586 is cyt
5' end seq. ID VSI586F
5' end seq. 
>VSI586F.Seq
AAATAAATAATAAAATGTCCAAAACTGCAGTTTGTGTAATTAAAGGTGAAAAAGTTAACG
GTGTTGTTAAATTCACTCAAGAAAATAAAGACTCACCAGTCACTGTTAATTATGATATCA
CCTGGTTTAGAAAAAGGTGAACACGGTTTCCACGTTCATGCTTTTGGTGATACAACCAAT
GGTTGTGTTAGTGCTGGTCCACATTTTAACCCATTTGGTAAAAATCATGGTGCTCCATCA
GATGAAGATCGTCATGTTGGTGATTTAGGTAACATTGTTGCCGATGGTGAGTCAAATACC
AAAGGTACCATCAGTGATAAAATTATCTCCCTCTTTGGTGAACACACAATCGTTGGTAGA
ACTATGGTTGTCCATGCTGATCAAGATGATTTAGGTAAAGGTGGTAAACCAGATTCCTTA
ACTACTGGTGCTGCTGGTGCTCGTCTTGGTTG----------
Length of 5' end seq. 452
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -