>AHA788 (AHA788Q) /CSM/AH/AHA7-D/AHA788Q.Seq.d/
AAAAACGACATAATAAAATGTGTGTTTGGGCATTATTTGAAATATTAAACATAGTTAATT
AAGAATGAAAGATTTATTATCATCATTATCAAAAGGTATTCCTTTTGAGCCATTACCAGA
GCACCCAGGATTAGATTCAACTGTACCACATGCTCCAGGTCGTCCAATTAATTTAACATT
AAACGAAAAAAAGTTAGCAATTAAAAATTCATTAAGATATTTCCCAAATTCATTACATTC
AATTTTAGCAAATGAATTTTTAGAAGAATTAAATAAATATGGACATATTTATATGTATAG
ATTTAGACCAACTCATTATGAGATGAAAGCATATCCAATTGAAGAATATCCAGCAAAATC
AAGACAAGCAGCATCGATTATGTTAATGATTATGAATAATTTAGATAGAGAGGTTGCACA
ATTTCCAAATGAATTGGTAACCTATGGTGGTAATGGTAGTGTTTTTCAAAATTGGGCACA
ATATCATTTAACCATGAAATATCTTTCAGAGATGACATATCAACAAACCCTAACAATGTA
TAGTGGTCATCCAATGGGTTTATTCCCATCAAATGAAAGTTCACCACGTGTTATCGTTAC
CAATGGTATGGTGXXXXXXXXXX

ktt**nvclgii*nikhs*LRMKDLLSSLSKGIPFEPLPEHPGLDSTVPHAPGRPINLTL
NEKKLAIKNSLRYFPNSLHSILANEFLEELNKYGHIYMYRFRPTHYEMKAYPIEEYPAKS
RQAASIMLMIMNNLDREVAQFPNELVTYGGNGSVFQNWAQYHLTMKYLSEMTYQQTLTMY
SGHPMGLFPSNESSPRVIVTNGM---

Frame A:
kndiikcvfghylky*t*liknerfiiiiikrysf*aitraprirfncttcsrssn*fni
krkkvsn*kfikifpkfitfnfsk*ifrrik*iwtylyv*i*tnsl*desisn*risski
ktssidyvndye*fr*rgctisk*ignlww*w*cfsklgtisfnheisfrddistnpnnv
*wssngfipik*kfttcyryqwyg---


Frame B:
ktt**nvclgii*nikhs*LRMKDLLSSLSKGIPFEPLPEHPGLDSTVPHAPGRPINLTL
NEKKLAIKNSLRYFPNSLHSILANEFLEELNKYGHIYMYRFRPTHYEMKAYPIEEYPAKS
RQAASIMLMIMNNLDREVAQFPNELVTYGGNGSVFQNWAQYHLTMKYLSEMTYQQTLTMY
SGHPMGLFPSNESSPRVIVTNGM---


Frame C:
krhnkmcvwalfeilnivn*e*kiyyhhyqkvfllshyqstqd*iqlyhmlqvvqli*h*
tkks*qlkih*disqihyiqf*qmnf*kn*inmdificidldqlimr*khiqlkniqqnq
dkqhrlc**l*ii*ierlhnfqmnw*pmvvmvvffkighnii*p*nifqr*hinkp*qci
vviqwvyshqmkvhhvlslpmvw---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AHA788 (AHA788Q) /CSM/AH/AHA7-D/AHA788Q.Seq.d/                       1174   0.0
VHC407 (VHC407Q) /CSM/VH/VHC4-A/VHC407Q.Seq.d/                       1108   0.0
VHB779 (VHB779Q) /CSM/VH/VHB7-D/VHB779Q.Seq.d/                       1108   0.0
VHB638 (VHB638Q) /CSM/VH/VHB6-B/VHB638Q.Seq.d/                       1108   0.0
VHA266 (VHA266Q) /CSM/VH/VHA2-C/VHA266Q.Seq.d/                       1108   0.0
SFG741 (SFG741Q) /CSM/SF/SFG7-B/SFG741Q.Seq.d/                       1108   0.0
CHP841 (CHP841Q) /CSM/CH/CHP8-B/CHP841Q.Seq.d/                       1108   0.0
CHM712 (CHM712Q) /CSM/CH/CHM7-A/CHM712Q.Seq.d/                       1108   0.0
CHI433 (CHI433Q) /CSM/CH/CHI4-B/CHI433Q.Seq.d/                       1108   0.0
VHJ721 (VHJ721Q) /CSM/VH/VHJ7-A/VHJ721Q.Seq.d/                       1106   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC115612|AC115612.2 Dictyostelium discoideum chromosome 2 map 6245135-6357017 strain AX4, complete sequence.   827   0.0    3
AL844505|AL844505.1 Plasmodium falciparum chromosome  6.           38   4e-07  22
AL034559|AL034559.4 Plasmodium falciparum MAL3P7.                  38   1e-06  13
AL844507|AL844507.1 Plasmodium falciparum chromosome 8.            40   2e-06  21
AE014818|AE014818.1 Plasmodium falciparum 3D7 chromosome 14 section 3 of 13 of the complete sequence.    32   5e-06  14
AL844506|AL844506.1 Plasmodium falciparum chromosome  7.           36   6e-06  22
AJ235271|AJ235271.1 Rickettsia prowazekii strain Madrid E, complete genome; segment 2/4.    34   4e-05  12
AE014825|AE014825.1 Plasmodium falciparum 3D7 chromosome 14 section 10 of 13 of the complete sequence.    36   4e-05  9
AL773558|AL773558.13 Zebrafish DNA sequence from clone CH211-207M11.    34   7e-05  11
AE014840|AE014840.1 Plasmodium falciparum 3D7 chromosome 11 section 5 of 8 of the complete sequence.    38   8e-05  11

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC115612_6(AC115612|pid:none) Dictyostelium discoideum chromosom...   374   e-102
(Q86AX3) RecName: Full=Probable urocanate hydratase;          Sh...   374   e-102
BC091617_1(BC091617|pid:none) Xenopus tropicalis MGC97780 protei...   238   1e-61
EU016618_28(EU016618|pid:none) Uncultured marine microorganism H...   221   9e-57
CU207366_232(CU207366|pid:none) Gramella forsetii KT0803 complet...   211   1e-53
(Q9NAE2) RecName: Full=Probable urocanate hydratase;          Sh...   207   1e-52
CP000853_571(CP000853|pid:none) Alkaliphilus oremlandii OhILAs, ...   167   3e-40
CP000724_3913(CP000724|pid:none) Alkaliphilus metalliredigens QY...   166   4e-40
CP000879_235(CP000879|pid:none) Petrotoga mobilis SJ95, complete...   165   1e-39
CP001087_4340(CP001087|pid:none) Desulfobacterium autotrophicum ...   163   4e-39

 psg: 0.78  gvh: 0.53  alm: 0.49  top: 0.53  tms: 0.00  mit: 0.25  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 44.0 %: nuclear
	  4.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for AHA788 is cyt

>AHA788F.Seq
AAAAACGACATAATAAAATGTGTGTTTGGGCATTATTTGAAATATTAAACATAGTTAATT
AAGAATGAAAGATTTATTATCATCATTATCAAAAGGTATTCCTTTTGAGCCATTACCAGA
GCACCCAGGATTAGATTCAACTGTACCACATGCTCCAGGTCGTCCAATTAATTTAACATT
AAACGAAAAAAAGTTAGCAATTAAAAATTCATTAAGATATTTCCCAAATTCATTACATTC
AATTTTAGCAAATGAATTTTTAGAAGAATTAAATAAATATGGACATATTTATATGTATAG
ATTTAGACCAACTCATTATGAGATGAAAGCATATCCAATTGAAGAATATCCAGCAAAATC
AAGACAAGCAGCATCGATTATGTTAATGATTATGAATAATTTAGATAGAGAGGTTGCACA
ATTTCCAAATGAATTGGTAACCTATGGTGGTAATGGTAGTGTTTTTCAAAATTGGGCACA
ATATCATTTAACCATGAAATATCTTTCAGAGATGACATATCAACAAACCCTAACAATGTA
TAGTGGTCATCCAATGGGTTTATTCCCATCAAATGAAAGTTCACCACGTGTTATCGTTAC
CAATGGTATGGTGNNNNNNNNNN