NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSJ859
Library VS
(Link to library)
Clone ID VSJ859
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16089-1
Original site URL
Representative seq. ID VSJ859P
(Link to Original site)
Representative DNA sequence 
>VSJ859 (VSJ859Q) /CSM/VS/VSJ8-C/VSJ859Q.Seq.d/
CCACTCTCAAAAACTCCACCACCACAATTAGCTCATATTACAAATACTGAATTAAACAAG
AAAGTTGAAAAATCCACTACAACTCCAACTACTACAACTCCACCAACTACCACCGCTAAA
CCAAAACCAACTAACGACGATGATATTTTCACAATGGAATAAGGGGAGAAAGAAAGAAAG
AGAAAGTAGTATTGTATAAATTTAAAAAAAAAAXXXXXXXXXXCCACGNGTNNGCCNCTN
TCAANAACTCCACCACCNCAATTAGCTNATATT
sequence update 2001. 3.22
Translated Amino Acid sequence 
tlknstttissyyky*ikqes*kihynsnyynstnyhr*tktn*rr*YFHNGIRGERKKE
KVVLYKFKKK---

---HXXAXXXNSTTXISXY
Translated Amino Acid sequence (All Frames) 
Frame A:
plsktpppqlahitntelnkkvekstttpttttpptttakpkptndddiftme*gekerk
rk*ycinlkkk---

---prvxxxqxlhhxn*li

Frame B:
hsqklhhhn*lilqiln*trklknplqlqllqlhqlpplnqnqlttmifsqwnkgrkker
essiv*i*kk---

---HXXAXXXNSTTXISXY

Frame C:
tlknstttissyyky*ikqes*kihynsnyynstnyhr*tktn*rr*YFHNGIRGERKKE
KVVLYKFKKK---

---txxplsxtpppqlaxi
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSJ859 (VSJ859Q) /CSM/VS/VSJ8-C/VSJ859Q.Seq.d/                        402   e-111
VSC738 (VSC738Q) /CSM/VS/VSC7-B/VSC738Q.Seq.d/                        402   e-111
SSM665 (SSM665Q) /CSM/SS/SSM6-C/SSM665Q.Seq.d/                        402   e-111
SSM607 (SSM607Q) /CSM/SS/SSM6-A/SSM607Q.Seq.d/                        402   e-111
SSL115 (SSL115Q) /CSM/SS/SSL1-A/SSL115Q.Seq.d/                        402   e-111
SSB201 (SSB201Q) /CSM/SS/SSB2-A/SSB201Q.Seq.d/                        402   e-111
SSA681 (SSA681Q) /CSM/SS/SSA6-D/SSA681Q.Seq.d/                        396   e-110
FC-AK24 (FC-AK24Q) /CSM/FC/FC-AK/FC-AK24Q.Seq.d/                      387   e-107
SSL171 (SSL171Q) /CSM/SS/SSL1-C/SSL171Q.Seq.d/                        270   1e-71
SSI340 (SSI340Q) /CSM/SS/SSI3-B/SSI340Q.Seq.d/                        250   9e-66
own update 2001.11.13
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AB038152|AB038152.1 Dictyostelium discoideum Dd4E-BP mRNA for 4E-binding protein homolog, complete cds.   402  e-109  1
AL772290|AL772290.3 Mouse DNA sequence from clone RP23-66O4 on chromosome 4.    44  9e-04  2
AX345402|AX345402.1 Sequence 473 from Patent WO0200928.           46  0.006  3
AG140815|AG140815.1 Pan troglodytes DNA, clone: PTB-155L12.F.     50  0.014  1
AL954315|AL954315.6 Mouse DNA sequence from clone RP23-105O1 on chromosome 2.    40  0.018  5
AC009333|AC009333.12 Homo sapiens chromosome 7 clone RP11-356G1, complete sequence.    42  0.018  4
AC110177|AC110177.5 Mus musculus clone RP24-245K23, WORKING DRAFT SEQUENCE, 5 ordered pieces.    40  0.018  2
CC385689|CC385689.1 PUEHH21TD ZM_0.6_1.0_KB Zea mays genomic clone ZMMBTa252C18, DNA sequence.    48  0.054  1
AZ555086|AZ555086.1 RPCI-23-177L24.TJ RPCI-23 Mus musculus genomic clone RPCI-23-177L24 , DNA sequence.    48  0.054  1
CD976121|CD976121.1 QAF13b01.yg QAF Zea mays cDNA clone QAF13b01, mRNA sequence.    48  0.054  1
dna update 2003. 7.27
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB038152_1(AB038152|pid:none) Dictyostelium discoideum Dd4E-BP m...    64   1e-09
(Q54DU8) RecName: Full=Eukaryotic translation initiation factor ...    62   6e-09
protein update 2009. 3.25
PSORT 

 psg: 0.47  gvh: 0.39  alm: 0.69  top: 0.53  tms: 0.00  mit: 0.25  mip: 0.03
 nuc: 0.15  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: nuclear
	 16.0 %: mitochondrial
	 16.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for VSJ859 is nuc
5' end seq. ID VSJ859F
5' end seq. 
>VSJ859F.Seq
CCACTCTCAAAAACTCCACCACCACAATTAGCTCATATTACAAATACTGAATTAAACAAG
AAAGTTGAAAAATCCACTACAACTCCAACTACTACAACTCCACCAACTACCACCGCTAAA
CCAAAACCAACTAACGACGATGATATTTTCACAATGGAATAAGGGGAGAAAGAAAGAAAG
AGAAAGTAGTATTGTATAAATTTAAAAAAAAAA----------
Length of 5' end seq. 213
3' end seq. ID VSJ859Z
3' end seq. 
>VSJ859Z.Seq
----------CCACGNGTNNGCCNCTNTCAANAACTCCACCACCNCAATTAGCTNATATT
Length of 3' end seq. 50
Connected seq. ID VSJ859P
Connected seq. 
>VSJ859P.Seq
CCACTCTCAAAAACTCCACCACCACAATTAGCTCATATTACAAATACTGAATTAAACAAG
AAAGTTGAAAAATCCACTACAACTCCAACTACTACAACTCCACCAACTACCACCGCTAAA
CCAAAACCAACTAACGACGATGATATTTTCACAATGGAATAAGGGGAGAAAGAAAGAAAG
AGAAAGTAGTATTGTATAAATTTAAAAAAAAAA----------CCACGNGTNNGCCNCTN
TCAANAACTCCACCACCNCAATTAGCTNATATT
Length of connected seq. 263
Full length Seq ID -
Full length Seq. -
Length of full length seq. -