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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U04192-1
Contig ID Contig-U04192-1
Contig update 2001. 8.29
Contig sequence 
>Contig-U04192-1 (Contig-U04192-1Q) /CSM_Contig/Contig-U04192-1Q.Seq.d
GGATGATATCATCATGGAGAAGATCACTCGTTCACAACTCTTGATGATGC
ATAGATATTTAGCAGGTTCCAATTTCATCTCCAAATGGTATTCCAACGAG
TATCTTAAAGCTCAAATCTATAAAAAATTGGATAAGATCAAACAAGACGA
TATCCTCATCAAGAAAGAGGGTCTTAGCTCATTGACTTTGGAGGAATTGG
TCGATGCTGCCATCACTCGTGGTTTCAAAGTCGAAGGTTACAATAGAAAA
TTCATTGAAGGTCAATTGGATCAATGGTTAGATCTTTCCCTAAATAAATC
TTTACCACCATCCATTTTAATTTTATCTCGTGCTTTCACCCTTTCACCAG
GTGTCACCACAAATGAAGCCCTAGAAGATACTTTAGAACATATTCCACAA
GATGTTTTGAATGAAGTAGTCAAAGATTTACCATCTGATCTTTCAACTGA
ACAAGGTCAAGAAATGGTAAAAGAAAAAATTAATGAATTAACTAAAGAAC
AACAAGAAATTACAACTCATACTGAACAAGATGATGAAAATACTAAAGTA
GATGATAAAAATGAAAAACAACCAACAACTCAAGATGATCAACAACAACA
ACAACAATCAAGCGAACAACAGCCATCAAGCGAACAACAAGAAACTTCAG
TAAATGAAGCTCCAAAAGATGAAGAAAAACCAAAAGAAAATAAGTAAAAA
ATAATATACATTTGCAAAACAAAAAA
Gap no gap
Contig length 726
Chromosome number (1..6, M) 3
Chromosome length 6358359
Start point 918679
End point 917953
Strand (PLUS/MINUS) MINUS
Number of clones 2
Number of EST 2
Link to clone list U04192
List of clone(s) 

est1=SLH608E,1,727
est2=SLK465Z,380,723
Translated Amino Acid sequence 
DDIIMEKITRSQLLMMHRYLAGSNFISKWYSNEYLKAQIYKKLDKIKQDDILIKKEGLSS
LTLEELVDAAITRGFKVEGYNRKFIEGQLDQWLDLSLNKSLPPSILILSRAFTLSPGVTT
NEALEDTLEHIPQDVLNEVVKDLPSDLSTEQGQEMVKEKINELTKEQQEITTHTEQDDEN
TKVDDKNEKQPTTQDDQQQQQQSSEQQPSSEQQETSVNEAPKDEEKPKENK*kiiyickt
k
Translated Amino Acid sequence (All Frames) 
Frame A:
g*yhhgedhsfttldda*ifsrfqfhlqmvfqrvs*ssnl*kig*dqtrryphqergs*l
idfggigrcchhswfqsrrlq*kih*rsigsmvrsfpk*ifttihfnfiscfhpftrchh
k*sprryfrtystrcfe*ssqrfti*sfn*trsrngkrkn**in*rttrnynsy*tr**k
y*sr**k*kttnnsr*stttttikrttaikrttrnfsk*sskr*rktkrk*vknnihlqn
kk


Frame B:
DDIIMEKITRSQLLMMHRYLAGSNFISKWYSNEYLKAQIYKKLDKIKQDDILIKKEGLSS
LTLEELVDAAITRGFKVEGYNRKFIEGQLDQWLDLSLNKSLPPSILILSRAFTLSPGVTT
NEALEDTLEHIPQDVLNEVVKDLPSDLSTEQGQEMVKEKINELTKEQQEITTHTEQDDEN
TKVDDKNEKQPTTQDDQQQQQQSSEQQPSSEQQETSVNEAPKDEEKPKENK*kiiyickt
k


Frame C:
misswrrslvhns**cidi*qvpisspngiptsilklksiknwirsnktisssrkrvlah
*lwrnwsmlpslvvskskvtienslkvnwing*ifp*inlyhhpf*fylvlspfhqvspq
mkp*kil*nifhkmf*mk*skiyhlifqlnkvkkw*kkklmn*lknnkklqlilnkmmki
lk*mikmknnqqlkminnnnnnqannshqannkklq*mklqkmkknqkkiskk*ytfakq
k
own update 2004. 6. 9
Homology vs CSM-cDNA 
Query= Contig-U04192-1 (Contig-U04192-1Q)
/CSM_Contig/Contig-U04192-1Q.Seq.d
         (726 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U04192-1 (Contig-U04192-1Q) /CSM_Contig/Conti...  1122  0.0
Contig-U12799-1 (Contig-U12799-1Q) /CSM_Contig/Conti...    38  0.013
Contig-U13761-1 (Contig-U13761-1Q) /CSM_Contig/Conti...    36  0.051
Contig-U12684-1 (Contig-U12684-1Q) /CSM_Contig/Conti...    36  0.051
Contig-U03919-1 (Contig-U03919-1Q) /CSM_Contig/Conti...    36  0.051
Contig-U01695-1 (Contig-U01695-1Q) /CSM_Contig/Conti...    36  0.051
Contig-U00566-1 (Contig-U00566-1Q) /CSM_Contig/Conti...    36  0.051
Contig-U14772-1 (Contig-U14772-1Q) /CSM_Contig/Conti...    34  0.20
Contig-U13591-1 (Contig-U13591-1Q) /CSM_Contig/Conti...    34  0.20
Contig-U12384-1 (Contig-U12384-1Q) /CSM_Contig/Conti...    34  0.20

>Contig-U04192-1 (Contig-U04192-1Q) /CSM_Contig/Contig-U04192-1Q.Seq.d
          Length = 726

 Score = 1122 bits (566), Expect = 0.0
 Identities = 566/566 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggatgatatcatcatggagaagatcactcgttcacaactcttgatgatgcatagatattt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   ggatgatatcatcatggagaagatcactcgttcacaactcttgatgatgcatagatattt 60

                                                                       
Query: 61  agcaggttccaatttcatctccaaatggtattccaacgagtatcttaaagctcaaatcta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  agcaggttccaatttcatctccaaatggtattccaacgagtatcttaaagctcaaatcta 120

                                                                       
Query: 121 taaaaaattggataagatcaaacaagacgatatcctcatcaagaaagagggtcttagctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 taaaaaattggataagatcaaacaagacgatatcctcatcaagaaagagggtcttagctc 180

                                                                       
Query: 181 attgactttggaggaattggtcgatgctgccatcactcgtggtttcaaagtcgaaggtta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 attgactttggaggaattggtcgatgctgccatcactcgtggtttcaaagtcgaaggtta 240

                                                                       
Query: 241 caatagaaaattcattgaaggtcaattggatcaatggttagatctttccctaaataaatc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 caatagaaaattcattgaaggtcaattggatcaatggttagatctttccctaaataaatc 300

                                                                       
Query: 301 tttaccaccatccattttaattttatctcgtgctttcaccctttcaccaggtgtcaccac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tttaccaccatccattttaattttatctcgtgctttcaccctttcaccaggtgtcaccac 360

                                                                       
Query: 361 aaatgaagccctagaagatactttagaacatattccacaagatgttttgaatgaagtagt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 aaatgaagccctagaagatactttagaacatattccacaagatgttttgaatgaagtagt 420

                                                                       
Query: 421 caaagatttaccatctgatctttcaactgaacaaggtcaagaaatggtaaaagaaaaaat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 caaagatttaccatctgatctttcaactgaacaaggtcaagaaatggtaaaagaaaaaat 480

                                                                       
Query: 481 taatgaattaactaaagaacaacaagaaattacaactcatactgaacaagatgatgaaaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 taatgaattaactaaagaacaacaagaaattacaactcatactgaacaagatgatgaaaa 540

                                     
Query: 541 tactaaagtagatgataaaaatgaaa 566
           ||||||||||||||||||||||||||
Sbjct: 541 tactaaagtagatgataaaaatgaaa 566


 Score = 46.1 bits (23), Expect = 5e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 641 gaaacttcagtaaatgaagctcc 663
           |||||||||||||||||||||||
Sbjct: 641 gaaacttcagtaaatgaagctcc 663


>Contig-U12799-1 (Contig-U12799-1Q) /CSM_Contig/Contig-U12799-1Q.Seq.d
          Length = 2583

 Score = 38.2 bits (19), Expect = 0.013
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 487  attaactaaagaacaacaa 505
            |||||||||||||||||||
Sbjct: 1646 attaactaaagaacaacaa 1664


>Contig-U13761-1 (Contig-U13761-1Q) /CSM_Contig/Contig-U13761-1Q.Seq.d
          Length = 667

 Score = 36.2 bits (18), Expect = 0.051
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 488 ttaactaaagaacaacaa 505
           ||||||||||||||||||
Sbjct: 510 ttaactaaagaacaacaa 527


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8604
Number of Sequences: 6905
Number of extensions: 8604
Number of successful extensions: 902
Number of sequences better than 10.0: 116
length of query: 726
length of database: 5,674,871
effective HSP length: 16
effective length of query: 710
effective length of database: 5,564,391
effective search space: 3950717610
effective search space used: 3950717610
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 6.14
Homology vs DNA 
Query= Contig-U04192-1 (Contig-U04192-1Q) /CSM_Contig/Contig-U04192-1Q.Seq.d
         (726 letters)

Database: ddbj_A
           102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU062105) Dictyostelium discoideum slug cDNA, clone SLH608.     1122   0.0    1
(AU039346) Dictyostelium discoideum slug cDNA, clone SLH608.      880   0.0    1
(AU054035) Dictyostelium discoideum slug cDNA, clone SLK465.      371   3e-98  1
(AC208036) Zea mays chromosome 8 clone CH201-412B9; ZMMBBc04...    46   0.007  6
(BH130597) ENTNW45TR Entamoeba histolytica Sheared DNA Entam...    50   0.025  2
(AC135105) Mus musculus strain C57BL/6J clone rp23-354f7, co...    52   0.030  1
(AC012397) Mus musculus strain 129/Sv clone ct7-369p18 map 6...    52   0.030  1
(AC007844) Mus musculus strain 129/Sv ES cell line CJ7 chrom...    52   0.030  1
(BH159979) ENTSF39TR Entamoeba histolytica Sheared DNA Entam...    52   0.030  1
(AC121927) Mus musculus BAC clone RP24-202N20 from 10, compl...    50   0.12   1
(AE017332) Mycoplasma hyopneumoniae 232, complete genome.          46   0.24   9
(AC188824) Zea mays chromosome 3 clone CH201-173I6; ZMMBBc01...    46   0.37   4
(AL365334) Mouse DNA sequence from clone RP23-392F1 on chrom...    48   0.47   1
(AC148497) Otolemur garnettii clone CH256-518K23, WORKING DR...    48   0.47   1
(CZ512445) GMW2-58H14a.b1 GMW2 Glycine max genomic, genomic ...    48   0.47   1
(EJ043174) 1095454102750 Global-Ocean-Sampling_GS-26-01-01-1...    36   1.2    2
(EK030807) 1092955406788 Global-Ocean-Sampling_GS-31-01-01-1...    44   1.2    2
(EK417902) 1095515480492 Global-Ocean-Sampling_GS-31-01-01-1...    34   1.3    2
(AC108824) Mus musculus chromosome 7, clone RP23-81B14, comp...    46   1.9    1
(AC102509) Mus musculus chromosome 7, clone RP24-327G7, comp...    46   1.9    1
(CU695037) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   1.9    1
(CU694871) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   1.9    1
(CU498984) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   1.9    1
(AC233978) Zea mays chromosome 10 clone CH201-288E22; ZMMBBc...    46   1.9    1
(AC214124) Zea mays chromosome 10 clone CH201-153P9; ZMMBBc0...    46   1.9    1
(AC211948) Zea mays chromosome 7 clone CH201-213F6; ZMMBBc02...    46   1.9    1
(AC208925) Zea mays chromosome 5 clone CH201-433N11; ZMMBBc0...    46   1.9    1
(AC206027) Zea mays chromosome unknown clone CH201-370I12; Z...    46   1.9    1
(AC205013) Zea mays chromosome 7 clone CH201-419B3; ZMMBBc04...    46   1.9    1
(AC197737) Zea mays chromosome unknown clone CH201-184H19; Z...    46   1.9    1
(AC194295) Zea mays chromosome 3 clone CH201-281G3; ZMMBBc02...    46   1.9    1
(AC191294) Zea mays chromosome 4 clone CH201-307J23; ZMMBBc0...    46   1.9    1
(AC189751) Zea mays chromosome 10 clone CH201-527M23; ZMMBBc...    46   1.9    1
(AC187134) Zea mays chromosome 8 clone ZMMBBb-76N16; ZMMBBb0...    46   1.9    1
(AC185424) Zea mays chromosome 5 clone CH201-491M17; ZMMBBc0...    46   1.9    1
(BH133574) ENTOR88TR Entamoeba histolytica Sheared DNA Entam...    46   1.9    1
(AZ545082) ENTDF78TF Entamoeba histolytica Sheared DNA Entam...    46   1.9    1
(AZ540818) ENTEZ62TF Entamoeba histolytica Sheared DNA Entam...    46   1.9    1
(ER484010) 1093015285878 Global-Ocean-Sampling_GS-35-01-01-1...    46   1.9    1
(ER478796) 1093015251931 Global-Ocean-Sampling_GS-35-01-01-1...    46   1.9    1
(ER399862) 1095349047195 Global-Ocean-Sampling_GS-34-01-01-1...    46   1.9    1
(ER370186) 1093023037078 Global-Ocean-Sampling_GS-34-01-01-1...    46   1.9    1
(EK435025) 1095521026972 Global-Ocean-Sampling_GS-31-01-01-1...    46   1.9    1
(EK386402) 1095469484902 Global-Ocean-Sampling_GS-31-01-01-1...    46   1.9    1
(EK235832) 1095460199592 Global-Ocean-Sampling_GS-31-01-01-1...    46   1.9    1
(EJ996577) 1093024000316 Global-Ocean-Sampling_GS-30-02-01-1...    46   1.9    1
(EJ991460) 1093023052303 Global-Ocean-Sampling_GS-30-02-01-1...    46   1.9    1
(EJ926692) 1093018785972 Global-Ocean-Sampling_GS-30-02-01-1...    46   1.9    1
(EJ833159) 1093017588139 Global-Ocean-Sampling_GS-30-02-01-1...    46   1.9    1
(EJ793987) 1093017390497 Global-Ocean-Sampling_GS-30-02-01-1...    46   1.9    1
(EJ788077) 1093017362620 Global-Ocean-Sampling_GS-30-02-01-1...    46   1.9    1
(AM633605) Entamoeba dispar GSS, clone dispar103g03.p1k.           46   1.9    1
(EJ737349) 1092961206179 Global-Ocean-Sampling_GS-30-02-01-1...    46   1.9    1
(EJ732102) 1092960184751 Global-Ocean-Sampling_GS-30-02-01-1...    46   1.9    1
(EJ723477) 1092959471392 Global-Ocean-Sampling_GS-30-02-01-1...    46   1.9    1
(EJ708623) 1092956063787 Global-Ocean-Sampling_GS-30-02-01-1...    46   1.9    1
(EJ695634) 1092956017496 Global-Ocean-Sampling_GS-30-02-01-1...    46   1.9    1
(EJ685726) 1092955175273 Global-Ocean-Sampling_GS-30-02-01-1...    46   1.9    1
(EJ682208) 1092955139202 Global-Ocean-Sampling_GS-30-02-01-1...    46   1.9    1
(EJ668897) 1092955051072 Global-Ocean-Sampling_GS-30-02-01-1...    46   1.9    1
(EJ663108) 1092955031731 Global-Ocean-Sampling_GS-30-02-01-1...    46   1.9    1
(EJ658160) 1092955013614 Global-Ocean-Sampling_GS-30-02-01-1...    46   1.9    1
(EJ649880) 1092953007272 Global-Ocean-Sampling_GS-30-02-01-1...    46   1.9    1
(EJ643501) 1093012116887 Global-Ocean-Sampling_GS-29-01-01-1...    46   1.9    1
(EJ633606) 1092966811459 Global-Ocean-Sampling_GS-29-01-01-1...    46   1.9    1
(EJ625191) 1092963148141 Global-Ocean-Sampling_GS-29-01-01-1...    46   1.9    1
(EJ535743) 1092955258367 Global-Ocean-Sampling_GS-29-01-01-1...    46   1.9    1
(EJ393275) 1092963983381 Global-Ocean-Sampling_GS-28-01-01-1...    46   1.9    1
(EJ385197) 1092963801767 Global-Ocean-Sampling_GS-28-01-01-1...    46   1.9    1
(EJ348981) 1092963568529 Global-Ocean-Sampling_GS-28-01-01-1...    46   1.9    1
(EJ326778) 1092963393637 Global-Ocean-Sampling_GS-28-01-01-1...    46   1.9    1
(EJ281653) 1095366056787 Global-Ocean-Sampling_GS-27-01-01-1...    46   1.9    1
(EJ265411) 1095351007650 Global-Ocean-Sampling_GS-27-01-01-1...    46   1.9    1
(EJ181899) 1092344128322 Global-Ocean-Sampling_GS-27-01-01-1...    46   1.9    1
(EJ161238) 1092344048869 Global-Ocean-Sampling_GS-27-01-01-1...    46   1.9    1
(EJ067015) 1095458049999 Global-Ocean-Sampling_GS-26-01-01-1...    46   1.9    1
(CZ544172) SRAA-aad54c12.b1 Strongyloides ratti whole genome...    46   1.9    1
(CZ539192) SRAA-aad24b12.b1 Strongyloides ratti whole genome...    46   1.9    1
(CZ534041) SRAA-aac88h10.b1 Strongyloides ratti whole genome...    46   1.9    1
(CZ334588) ZMMBF0043H24r ZMMBF Zea mays genomic clone ZMMBF0...    46   1.9    1
(CL424116) ZMMBBb0428C13f ZMMBBb (HindIII) Zea mays subsp. m...    46   1.9    1
(CL200660) ZMMBBb0556L24r ZMMBBb (HindIII) Zea mays subsp. m...    46   1.9    1
(CL006228) ZMMBBb0541F17f ZMMBBb (HindIII) Zea mays subsp. m...    46   1.9    1
(CG414432) ZMMBBb0289F07.f ZMMBBb Zea mays subsp. mays genom...    46   1.9    1
(BH968448) odi25f09.g1 B.oleracea002 Brassica oleracea genom...    46   1.9    1
(AG415528) Mus musculus molossinus DNA, clone:MSMg01-277L05....    46   1.9    1
(CK315523) SB02026A1E04.f1 normalized Keck-Tagu Library SB02...    46   1.9    1
(CK298908) EST761622 Nicotiana benthamiana mixed tissue cDNA...    46   1.9    1
(CK289562) EST752284 Nicotiana benthamiana mixed tissue cDNA...    46   1.9    1
(CK286220) EST748942 Nicotiana benthamiana mixed tissue cDNA...    46   1.9    1
(CK285842) EST748564 Nicotiana benthamiana mixed tissue cDNA...    46   1.9    1
(CK284651) EST747373 Nicotiana benthamiana mixed tissue cDNA...    46   1.9    1
(CK284456) EST747178 Nicotiana benthamiana mixed tissue cDNA...    46   1.9    1
(AL954640) Mouse DNA sequence from clone RP23-65C22 on chrom...    44   2.0    2
(EC820499) SME00005557 esmbsro2 Sawyeria marylandensis cDNA,...    34   2.0    3
(BD460441) Diagnosis of Diseases Associated with Cell Cycle.       42   2.4    3
(BD452363) Diagnosis of Diseases Associated with Cell Cycle.       42   2.4    3
(AX349014) Sequence 472 from Patent WO0202807.                     42   2.4    3
(AX346437) Sequence 1508 from Patent WO0200928.                    42   2.4    3
(AX344369) Sequence 216 from Patent WO0200926.                     42   2.4    3
(AX251977) Sequence 238 from Patent WO0168911.                     42   2.4    3
(CU915522) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    36   2.8    3
(AC095598) Rattus norvegicus clone CH230-8M3, *** SEQUENCING...    36   2.8    5
(AC190256) Pan troglodytes BAC clone CH251-115A24 from chrom...    44   4.2    5
(FH505806) CHO_OF4699xh19r1.ab1 CHO_OF4 Nicotiana tabacum ge...    38   4.4    2
(AZ673575) ENTIX40TR Entamoeba histolytica Sheared DNA Entam...    38   4.9    2
(CD161017) ML1-0070T-M238-B10-U.G ML1-0070 Schistosoma manso...    32   4.9    2
(CD160941) ML1-0070T-M229-C04-U.G ML1-0070 Schistosoma manso...    32   4.9    2
(CD165109) ML1-0094T-D141-F11-U.G ML1-0094 Schistosoma manso...    32   5.0    2
(CR847786) Zebrafish DNA sequence from clone DKEYP-9B4 in li...    44   7.4    1
(CR384103) Zebrafish DNA sequence from clone DKEY-215K6 in l...    44   7.4    1
(BX547996) Zebrafish DNA sequence from clone CH211-212H16 in...    44   7.4    1
(BV603270) S217P6773FG8.T0 Noemie Pan troglodytes troglodyte...    44   7.4    1
(BX649511) Mouse DNA sequence from clone RP23-108B19 on chro...    44   7.4    1
(AF012141) Mus musculus T-cell receptor beta chain (TCRB) mR...    44   7.4    1
(AF012137) Mus musculus T-cell receptor beta chain (TCRB) mR...    44   7.4    1
(AC190214) Pan troglodytes BAC clone CH251-404E14 from chrom...    44   7.4    1
(EF676506) Picea sitchensis clone WS0273_L06 unknown mRNA.         44   7.4    1
(DD017533) Diagnesis of risk for prostatic diseases by novel...    44   7.4    1
(AM910992) Plasmodium knowlesi strain H chromosome 10, compl...    44   7.4    1
(AL451132) Human DNA sequence from clone RP11-7N10 on chromo...    44   7.4    1
(AC211399) Homo sapiens FOSMID clone ABC9-46273300B3 from ch...    44   7.4    1
(AC073248) Homo sapiens BAC clone CTD-2009F14 from 7, comple...    44   7.4    1
(AC061975) Homo sapiens chromosome 17, clone CTD-2008P7, com...    44   7.4    1
(AC044810) Homo sapiens chromosome 11, clone RP11-494M8, com...    44   7.4    1
(AC022535) Homo sapiens chromosome 10 clone RP11-34C15, comp...    44   7.4    1
(AC021427) Homo sapiens chromosome 11, clone RP11-399N15, co...    44   7.4    1
(AC005277) Homo sapiens chromosome 17, clone hRPK.597_M_12, ...    44   7.4    1
(AC002094) Genomic sequence from Human 17, complete sequence.      44   7.4    1
(AC162041) Bos taurus clone CH240-114G9, WORKING DRAFT SEQUE...    44   7.4    1
(AC151123) Bos taurus clone CH240-374H5, WORKING DRAFT SEQUE...    44   7.4    1
(AC145727) Zea mays clone ZMMBBc0007A01, *** SEQUENCING IN P...    44   7.4    1
(AC144346) Homo sapiens chromosome 11 clone XXfos-87228H4 ma...    44   7.4    1
(AC114250) Rattus norvegicus clone CH230-343H5, WORKING DRAF...    44   7.4    1
(AC113831) Rattus norvegicus clone CH230-271O16, WORKING DRA...    44   7.4    1
(AC103180) Rattus norvegicus clone CH230-101I3, *** SEQUENCI...    44   7.4    1
(FP102409) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   7.4    1
(CU914678) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   7.4    1
(CU862006) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   7.4    1
(CU856006) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   7.4    1
(CU639486) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   7.4    1
(CU582915) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   7.4    1
(AC084813) Homo sapiens chromosome 8 clone RP11-21H16 map 8,...    44   7.4    1
(CU407121) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   7.4    1
(BX465843) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    44   7.4    1
(AC231009) Bos taurus clone CH240-493N2, WORKING DRAFT SEQUE...    44   7.4    1
(AC230809) Bos taurus clone CH240-498E18, WORKING DRAFT SEQU...    44   7.4    1
(AC230105) Bos taurus clone CH240-521E19, WORKING DRAFT SEQU...    44   7.4    1
(AC223110) Bos taurus clone CH240-429C3, WORKING DRAFT SEQUE...    44   7.4    1
(AC222038) Bos taurus clone CH240-374H5, WORKING DRAFT SEQUE...    44   7.4    1
(AC213436) Zea mays chromosome 6 clone CH201-66F18; ZMMBBc00...    44   7.4    1
(AC209162) Zea mays chromosome 5 clone CH201-300P12; ZMMBBc0...    44   7.4    1
(AC199905) Zea mays chromosome 8 clone CH201-357B3; ZMMBBc03...    44   7.4    1
(AC191607) Zea mays chromosome 6 clone ZMMBBb-392H4; ZMMBBb0...    44   7.4    1
(AC185431) Zea mays chromosome 5 clone CH201-476H21; ZMMBBc0...    44   7.4    1
(AC165475) Bos taurus clone CH240-157D18, *** SEQUENCING IN ...    44   7.4    1
(AC022998) Homo sapiens chromosome 11 clone RP11-799H15 map ...    44   7.4    1
(AC011965) Homo sapiens clone RP11-202H12, *** SEQUENCING IN...    44   7.4    1
(FH432837) CHO_OF4947xf01f1.ab1 CHO_OF4 Nicotiana tabacum ge...    44   7.4    1
(FH141470) CHO_OF3703xk14r1.ab1 CHO_OF3 Nicotiana tabacum ge...    44   7.4    1
(FH141396) CHO_OF3703xk14f1.ab1 CHO_OF3 Nicotiana tabacum ge...    44   7.4    1
(ER299359) 1092343672214 Global-Ocean-Sampling_GS-34-01-01-1...    44   7.4    1
(EK440277) 1095522079404 Global-Ocean-Sampling_GS-31-01-01-1...    44   7.4    1
(EK338096) 1095467050051 Global-Ocean-Sampling_GS-31-01-01-1...    44   7.4    1
(EK279293) 1095462289273 Global-Ocean-Sampling_GS-31-01-01-1...    44   7.4    1
(EK085676) 1092961147719 Global-Ocean-Sampling_GS-31-01-01-1...    44   7.4    1
(EK017017) 1092955244163 Global-Ocean-Sampling_GS-31-01-01-1...    44   7.4    1
(EJ919189) 1093018591814 Global-Ocean-Sampling_GS-30-02-01-1...    44   7.4    1
(EJ918510) 1093018588550 Global-Ocean-Sampling_GS-30-02-01-1...    44   7.4    1
(EJ620371) 1092963055048 Global-Ocean-Sampling_GS-29-01-01-1...    44   7.4    1
(EJ602431) 1092961206914 Global-Ocean-Sampling_GS-29-01-01-1...    44   7.4    1
(EJ069717) 1095458074286 Global-Ocean-Sampling_GS-26-01-01-1...    44   7.4    1
(EI802740) MUGQ_CH252P249K23Sp6_CN502_086 CHORI-252 Vervet M...    44   7.4    1
(EI392608) CMHD-GT_324A10-3 GTL_R1_UPA Mus musculus cDNA clo...    44   7.4    1
(ED023704) SBA019_D05.r Sugar beet BAC library USH20 (Code S...    44   7.4    1
(CT421754) Sus scrofa genomic clone PigE-39G17, genomic surv...    44   7.4    1
(CC620866) OGWDN02TV ZM_0.7_1.5_KB Zea mays genomic clone ZM...    44   7.4    1
(BZ609087) WHAAH73TF Human MCF7 breast cancer cell line libr...    44   7.4    1
(EB963353) 11032403 ZF36 Danio rerio cDNA clone 3637373, mRN...    44   7.4    1
(CT691857) Danio rerio EST, clone ZF_mu_206l04 5'.                 44   7.4    1
(CT669808) Danio rerio EST, clone ZF_mu_160e07 5'.                 44   7.4    1
(AW128621) fe18c02.y1 Zebrafish WashU MPIMG EST Danio rerio ...    44   7.4    1
(Z33096) M.capricolum DNA for CONTIG MC137.                        44   7.4    1
(CP000742) Methanococcus vannielii SB, complete genome.            44   7.4    1
(CP000123) Mycoplasma capricolum subsp. capricolum ATCC 2734...    44   7.4    1

>(AU062105) Dictyostelium discoideum slug cDNA, clone SLH608.
          Length = 668

 Score = 1122 bits (566), Expect = 0.0
 Identities = 566/566 (100%)
 Strand = Plus / Plus


Query: 1   ggatgatatcatcatggagaagatcactcgttcacaactcttgatgatgcatagatattt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   ggatgatatcatcatggagaagatcactcgttcacaactcttgatgatgcatagatattt 60


Query: 61  agcaggttccaatttcatctccaaatggtattccaacgagtatcttaaagctcaaatcta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  agcaggttccaatttcatctccaaatggtattccaacgagtatcttaaagctcaaatcta 120


Query: 121 taaaaaattggataagatcaaacaagacgatatcctcatcaagaaagagggtcttagctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 taaaaaattggataagatcaaacaagacgatatcctcatcaagaaagagggtcttagctc 180


Query: 181 attgactttggaggaattggtcgatgctgccatcactcgtggtttcaaagtcgaaggtta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 attgactttggaggaattggtcgatgctgccatcactcgtggtttcaaagtcgaaggtta 240


Query: 241 caatagaaaattcattgaaggtcaattggatcaatggttagatctttccctaaataaatc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 caatagaaaattcattgaaggtcaattggatcaatggttagatctttccctaaataaatc 300


Query: 301 tttaccaccatccattttaattttatctcgtgctttcaccctttcaccaggtgtcaccac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tttaccaccatccattttaattttatctcgtgctttcaccctttcaccaggtgtcaccac 360


Query: 361 aaatgaagccctagaagatactttagaacatattccacaagatgttttgaatgaagtagt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 aaatgaagccctagaagatactttagaacatattccacaagatgttttgaatgaagtagt 420


Query: 421 caaagatttaccatctgatctttcaactgaacaaggtcaagaaatggtaaaagaaaaaat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 caaagatttaccatctgatctttcaactgaacaaggtcaagaaatggtaaaagaaaaaat 480


Query: 481 taatgaattaactaaagaacaacaagaaattacaactcatactgaacaagatgatgaaaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 taatgaattaactaaagaacaacaagaaattacaactcatactgaacaagatgatgaaaa 540


Query: 541 tactaaagtagatgataaaaatgaaa 566
           ||||||||||||||||||||||||||
Sbjct: 541 tactaaagtagatgataaaaatgaaa 566

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 770,358,123
Number of extensions: 50212937
Number of successful extensions: 4109085
Number of sequences better than 10.0: 186
Length of query: 726
Length of database: 101,790,757,118
Length adjustment: 24
Effective length of query: 702
Effective length of database: 99,340,224,878
Effective search space: 69736837864356
Effective search space used: 69736837864356
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.29
Homology vs Protein 
Query= Contig-U04192-1 (Contig-U04192-1Q) /CSM_Contig/Contig-U04192-1Q.Seq.d
         (726 letters)

Database: nrp_A
           3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR855207_8(CR855207|pid:none) Oryza sativa genomic DNA, chromoso...    82   1e-14
AP004881_5(AP004881|pid:none) Oryza sativa Japonica Group genomi...    80   6e-14
D89117_1(D89117|pid:none) Schizosaccharomyces pombe mRNA, partia...    80   8e-14
AL138647_9(AL138647|pid:none) Arabidopsis thaliana DNA chromosom...    79   2e-13
AE017343_271(AE017343|pid:none) Cryptococcus neoformans var. neo...    75   2e-12
CU633438_204(CU633438|pid:none) Podospora anserina genomic DNA c...    75   2e-12
BC046326_1(BC046326|pid:none) Mus musculus, Similar to leucine z...    75   2e-12
BC023862_1(BC023862|pid:none) Mus musculus leucine zipper-EF-han...    75   2e-12
(Q9Z2I0) RecName: Full=LETM1 and EF-hand domain-containing prote...    75   2e-12
BC055865_1(BC055865|pid:none) Mus musculus leucine zipper-EF-han...    75   2e-12
(P91927) RecName: Full=LETM1 and EF-hand domain-containing prote...    74   4e-12
(O95202) RecName: Full=LETM1 and EF-hand domain-containing prote...    74   5e-12
BX119973_1(BX119973|pid:none) Zebrafish DNA sequence from clone ...    74   6e-12
BC121318_1(BC121318|pid:none) Xenopus tropicalis leucine zipper-...    73   8e-12
CR954208_102(CR954208|pid:none) Ostreococcus tauri strain OTTH05...    73   1e-11
AM920435_706(AM920435|pid:none) Penicillium chrysogenum Wisconsi...    72   1e-11
AP007151_1249(AP007151|pid:none) Aspergillus oryzae RIB40 genomi...    72   1e-11
BC120274_1(BC120274|pid:none) Bos taurus leucine zipper-EF-hand ...    72   2e-11
AM270031_10(AM270031|pid:none) Aspergillus niger contig An02c037...    71   3e-11
CP001327_537(CP001327|pid:none) Micromonas sp. RCC299 chromosome...    70   5e-11
FN392320_510(FN392320|pid:none) Pichia pastoris GS115 chromosome...    68   3e-10
FM992688_120(FM992688|pid:none) Candida dubliniensis CD36 chromo...    67   7e-10
AE016814_202(AE016814|pid:none) Ashbya gossypii (= Eremothecium ...    64   4e-09
T22944(T22944) hypothetical protein F58G11.1b - Caenorhabditis e...    63   1e-08
(Q06493) RecName: Full=LETM1 domain-containing protein YLH47, mi...    62   1e-08
(Q28DA8) RecName: Full=LETM1 domain-containing protein LETM2, mi...    62   1e-08
CU928170_584(CU928170|pid:none) Kluyveromyces thermotolerans str...    62   2e-08
AE016814_218(AE016814|pid:none) Ashbya gossypii (= Eremothecium ...    60   5e-08
FN357490_11(FN357490|pid:none) Schistosoma mansoni genome sequen...    60   9e-08
CU928170_566(CU928170|pid:none) Kluyveromyces thermotolerans str...    59   2e-07
(Q5PQQ5) RecName: Full=LETM1 domain-containing protein LETM2, mi...    58   3e-07
AB296368_1(AB296368|pid:none) Rattus norvegicus LETM2S gene for ...    58   3e-07
CR380952_45(CR380952|pid:none) Candida glabrata strain CBS138 ch...    58   3e-07
(Q08179) RecName: Full=Mitochondrial distribution and morphology...    57   4e-07
AY173945_1(AY173945|pid:none) Homo sapiens leucine zipper-EF-han...    56   1e-06
BC029541_1(BC029541|pid:none) Homo sapiens leucine zipper-EF-han...    56   1e-06
(Q2VYF4) RecName: Full=LETM1 domain-containing protein LETM2, mi...    56   1e-06
AK302317_1(AK302317|pid:none) Homo sapiens cDNA FLJ53240 complet...    56   1e-06
CU928179_166(CU928179|pid:none) Zygosaccharomyces rouxii strain ...    55   2e-06
AB168539_1(AB168539|pid:none) Macaca fascicularis testis cDNA cl...    54   5e-06
CR940353_499(CR940353|pid:none) Theileria annulata strain Ankara...    53   8e-06
AM469859_3(AM469859|pid:none) Vitis vinifera contig VV78X250662....    49   2e-04
AX972161_1(AX972161|pid:none) Sequence 2964 from Patent EP1104808.     37   0.48
CU459003_2365(CU459003|pid:none) Magnetospirillum gryphiswaldens...    37   0.82
AB024743_2(AB024743|pid:none) Clostridium stercorarium ORF2 gene...    36   1.1
(Q54VF1) RecName: Full=Probable ATP-dependent RNA helicase ddx56...    35   1.8
AP008984_60(AP008984|pid:none) Cyprinid herpesvirus 3 DNA, compl...    35   2.4
AC125476_16(AC125476|pid:none) Medicago truncatula clone mth2-10...    35   2.4
AF537337_1(AF537337|pid:none) Entamoeba moshkovskii Laredo chape...    35   2.4
CP001078_1652(CP001078|pid:none) Clostridium botulinum E3 str. A...    35   2.4
CR548612_223(CR548612|pid:none) Paramecium tetraurelia macronucl...    35   3.1
EF568108_62(EF568108|pid:none) Glossina pallidipes salivary glan...    35   3.1
CP000962_2233(CP000962|pid:none) Clostridium botulinum A3 str. L...    35   3.1
AC116979_57(AC116979|pid:none) Dictyostelium discoideum chromoso...    35   3.1
CR380958_226(CR380958|pid:none) Candida glabrata strain CBS138 c...    34   4.1
AP007255_2790(AP007255|pid:none) Magnetospirillum magneticum AMB...    34   4.1
DQ286057_1(DQ286057|pid:none) Hydra vulgaris myosin heavy chain ...    34   5.3
AM910991_454(AM910991|pid:none) Plasmodium knowlesi strain H chr...    34   5.3
AY615875_1(AY615875|pid:none) Phalansterium solitarium clone 1 h...    34   5.3
CP000230_1547(CP000230|pid:none) Rhodospirillum rubrum ATCC 1117...    34   5.3
AM393021_1(AM393021|pid:none) Synthetic construct Homo sapiens c...    34   5.3
AL832026_1(AL832026|pid:none) Homo sapiens mRNA; cDNA DKFZp451K1...    34   5.3
CR933643_1(CR933643|pid:none) Homo sapiens mRNA; cDNA DKFZp686C1...    34   5.3
AL445564_238(AL445564|pid:none) Mycoplasma pulmonis (strain UAB ...    34   5.3
AK055948_1(AK055948|pid:none) Homo sapiens cDNA FLJ31386 fis, cl...    34   5.3
CR382124_480(CR382124|pid:none) Kluyveromyces lactis strain NRRL...    34   5.3
(Q96N57) RecName: Full=Zinc finger CCHC domain-containing protei...    34   5.3
AF055079_1(AF055079|pid:none) Panulirus argus inositol 1,4,5-tri...    34   5.3
AL137849_7(AL137849|pid:none) Human DNA sequence from clone RP11...    34   5.3
AB051498_1(AB051498|pid:none) Homo sapiens mRNA for KIAA1711 pro...    34   5.3
(P0C2N8) RecName: Full=ATP-dependent RNA helicase drs-1;        ...    33   6.9
(Q5BEN5) RecName: Full=Protein stu1;                                   33   6.9
AL031745_13(AL031745|pid:none) Plasmodium falciparum DNA from MA...    33   6.9
AB097143_1(AB097143|pid:none) Danio rerio retrotransposon DewaDr...    33   6.9
AY226085_1(AY226085|pid:none) Suberites fuscus 90-kDa heat-shock...    33   6.9
CP001176_2928(CP001176|pid:none) Bacillus cereus B4264, complete...    33   6.9
CP001357_1368(CP001357|pid:none) Brachyspira hyodysenteriae WA1,...    33   9.1
AK317564_1(AK317564|pid:none) Arabidopsis thaliana AT1G80790 mRN...    33   9.1
CP000932_1174(CP000932|pid:none) Campylobacter lari RM2100, comp...    33   9.1
T30330(T30330) gelsolin-related protein GRP125 - slime mold (Dic...    33   9.1
CP000227_542(CP000227|pid:none) Bacillus cereus Q1, complete gen...    33   9.1
BC097782_1(BC097782|pid:none) Xenopus laevis cDNA clone IMAGE:68...    33   9.1
(Q94636) RecName: Full=DNA polymerase alpha catalytic subunit;  ...    33   9.1

>CR855207_8(CR855207|pid:none) Oryza sativa genomic DNA, chromosome
           4, BAC clone: H0306B06, complete sequence.
           &CR855209_4(CR855209|pid:none)
          Length = 753

 Score = 82.4 bits (202), Expect = 1e-14
 Identities = 64/205 (31%), Positives = 104/205 (50%), Gaps = 16/205 (7%)
 Frame = +2

Query: 2   DDIIMEKITRSQLLMMHRYLAGSNFISKWYSNEYLKAQIYXXXXXXXXXXXXXXXEGLSS 181
           D++ ++ + R++L+ M +Y+     I  + ++ YL   +                EG+ S
Sbjct: 366 DELTLDNMNRARLVNMCKYMG----IQPFGTDHYLTFMLRKKLQEIKNDDKMIQAEGVES 421

Query: 182 LTLEELVDAAITRGFKVEGYNRKFIEGQLDQWLDLSLNKSLPPSILILSRAFTLSPGVTT 361
           L+ EEL  A   RG  +   + + ++ QL  WLDLSLN S+P S+LILSRAFT+S  +
Sbjct: 422 LSEEELRQACRERGH-LGLLSTEEMQNQLRDWLDLSLNHSVPSSLLILSRAFTMSGKMKP 480

Query: 362 NEALEDTLEHIPQDVLNEVVKDLPSDLST----------EQGQEMVKEKINELTKEQQ-- 505
            EA+  TL  +P +V++ V   LPS+ S           E  +E++KE+     KE +
Sbjct: 481 EEAVVATLSSLPDEVVDTVGTVLPSEDSVSDRKRKLEFLEMQEELIKEEEKRQEKEDKAK 540

Query: 506 -EITTHTEQD---DENTKVDDKNEK 568
            E+   TE+D    E T+   + EK
Sbjct: 541 LEVPKATEEDVALKEMTEPTAREEK 565

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 914,521,739
Number of extensions: 17048044
Number of successful extensions: 53741
Number of sequences better than 10.0: 83
Number of HSP's gapped: 53502
Number of HSP's successfully gapped: 86
Length of query: 242
Length of database: 1,061,185,681
Length adjustment: 125
Effective length of query: 117
Effective length of database: 652,629,681
Effective search space: 76357672677
Effective search space used: 76357672677
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)
PSORT 

 psg: 0.75  gvh: 0.44  alm: 0.44  top: 0.53  tms: 0.00  mit: 0.17  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 28.0 %: nuclear
	 12.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for Contig-U04192-1 is cyt
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 2
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0