Contig-U09367-1
Contig ID Contig-U09367-1
Contig update 2002. 9.13
Contig sequence
>Contig-U09367-1 (Contig-U09367-1Q) /CSM_Contig/Contig-U09367-1Q.Seq.d
ACAAAGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATATAATATAATA
TAATATTATAAAACAAACAAATAGATAATAAAAATAATATAAAATAATAA
TTTCATTGTTTTTTCTAAAAAATTTAATATAAATTAATTACAAGATAGAA
TGTCATCTCAAGAACAACAAAAATCAAAGCAAAATCAAGCTCAAGAAGGT
GTTGACGGAGTTTGGTTAGTATAAATATTCTACACTTTCAAGAGTTTATA
ATTATGGTTTTGTTAATGGATCAATTGAAAAGGGTAAAGAATGGTATAAC
TATATTAAAGACTCAAATTCATATGTAAAGAGTACACTTGAATTTGGTGA
AAATGGTGTTGTTGCAGTTGGTAGACCACTTCTTGATAAATTAGAACAAT
ATGATGTTATAGTTAAAAAGGTTGATGAATATGGTAATACTGGTTTAGAT
ATTCTCGAAAAGAAAGTTGAATCAATTAAAGAAACTGGTGAAAATTTAGC
AAATAAAGCAGATTCAGCAGCTGATGGTTTAATTAGTGTATCTGCAAATT
ATACACCAAATGCAGTAATTGGTTTAGTACAAAAAACAAATAATATGATT
GATTCATTAATTGATTCATTATTACCACCAAAAGATGATGATCAAGTTAA
TGAAATGAGTGATGAAGAGAAGTTTCAACTTGAAAAGAGAATGAAATTTT
TATTAAAGTTAAGAAAGAGATTAAATACTCAATCCATTTTAGAGATTCCT
TCAAATTCAATTCATTTAGTCACTGGATATAGTGGTAAATCATACTCTCA
AGCAATGGATAATATTTCTCAACTCTCAAATTCAATCTCAAAAATCACTG
TAAATAGTCAATTCTCTAAAGTCTTTATTGATCAAATTTATCACTATACT
GATATTTTAGTTGGTCAAGTTGCAGCAGTTTCTGTTTGGTTCAGAGAAAT
TAATATTTCAGAAACTCTCATCTCACTTGGTGAACTCTCTAAAATGATAA
ATGAATCAAAGAATCAAGTTTTAGAACTTTCTGATCCTCAAGAAAAAGTT
GATAAACTCAAGAAAGACCTTTCAAAGATTTTAAAGAGTTGTTTAGATGT
TTTACATAACCAAATGGAAGGTGGTAAAGATAAACTAGAGTCATTCAAAG
AATCAGTTTCAGATCATCAATATTTTGTTGCATCCTTTTCATTGTTAGAA
AGTTCATTAAATAAACTCTCTGTTACACTCAAGAATTATTTAGACAACTT
GGAAGAGAAATCATCTTCATCTTCAAATGATAACTCAACCAATTAGAATA
TTAACTGGTTGATTCCTTTTTTTTTAAAATCTTACTCTCTAACATATAAA
TAATAATAAAATATAAAATATAAATCAATAAATATATAAATAAATCATAA
AAAA----------TTTAATTTTTAATCCTTTTTTTTTTTATTTTATCTT
TAAAAAAAAAAAAAAAAAAAAAAAAATTTTTTTTTTGGGGTCCTTTTTTT
TTAACTTTTTTTTTTTTTTTTTTTTNTCCCAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Gap gap included
Contig length 1633
Chromosome number (1..6, M) 3
Chromosome length 6358359
Start point 2487801
End point 2489370
Strand (PLUS/MINUS) PLUS
Number of clones 14
Number of EST 20
Link to clone list U09367
List of clone(s)

est1=SLD606F,1,120
est2=SLF802F,20,297
est3=AFO261F,33,524
est4=SLE217E,133,1405
est5=SFI402F,192,435
est6=CFF439E,215,1339
est7=AFN806Z,592,1267
est8=AFO261Z,601,1384
est9=AFK490Z,615,1262
est10=AFH731Z,636,1282
est11=SFI402Z,636,1377
est12=AFI593Z,684,1271
est13=SFI450Z,710,1389
est14=VFK396Z,723,1267
est15=SSE307F,727,1052
est16=VSI136F,1069,1405
est17=VSI136Z,1069,1378
est18=SLF802Z,1077,1405
est19=SLD606Z,1159,1390
est20=SSE307Z,1406,1635
Translated Amino Acid sequence
tklkkkkkkkkknii*yniikqtnr**k*ykiiislfflknli*inykiechlknnknqs
kiklkkvltefg*ykystlsrvynygfvngsiekgkewynyikdsnsyvkstlefgengv
vavgrplldkleqydvivkkvdeygntgldilekkvesiketgenlankadsaadglisv
sanytpnaviglvqktnnmidslidsllppkdddqvnemsdeekfqlekrmkfllklrkr
lntqsileipsnsihlvtgysgksysqamdnisqlsnsiskitvnsqfskvfidqiyhyt
dilvgqvaavsvwfreinisetlislgelskminesknqvlelsdpqekvdklkkdlski
lkscldvlhnqmeggkdklesfkesvsdhqyfvasfsllesslnklsvtlknyldnleek
sssssndnstn*ninwlipfflksysltyk***nikyksini*INHKK---

---LIFNPFFFYFIFKKKKKKKKIFFLGSFFFNFFFFFFXSQKKKKKKKKKKKKKKKKKK
KKKKKKKKKKKKKKKKKKK


Translated Amino Acid sequence (All Frames)
Frame A:
tklkkkkkkkkknii*yniikqtnr**k*ykiiislfflknli*inykiechlknnknqs
kiklkkvltefg*ykystlsrvynygfvngsiekgkewynyikdsnsyvkstlefgengv
vavgrplldkleqydvivkkvdeygntgldilekkvesiketgenlankadsaadglisv
sanytpnaviglvqktnnmidslidsllppkdddqvnemsdeekfqlekrmkfllklrkr
lntqsileipsnsihlvtgysgksysqamdnisqlsnsiskitvnsqfskvfidqiyhyt
dilvgqvaavsvwfreinisetlislgelskminesknqvlelsdpqekvdklkkdlski
lkscldvlhnqmeggkdklesfkesvsdhqyfvasfsllesslnklsvtlknyldnleek
sssssndnstn*ninwlipfflksysltyk***nikyksini*INHKK---

---fnf*sffflfyl*kkkkkkknfffgvlff*lffffffxpkkkkkkkkkkkkkkkkkk
kkkkkkkkkkkkkkkkkkk

Frame B:
qs*kkkkkkkkki*yniil*nkqidnknnik**fhcff*ki*yklitr*nvisrttkika
ksssrrc*rslvsinilhfqefiimvllmdqlkrvkngitilktqihm*rvhlnlvkmvl
lqlvdhflin*nnmml*lkrlmnmvilv*ifskrklnqlkklvki*qikqiqqlmv*lvy
lqiihqmq*lv*ykkqii*lih*lihyyhqkmmiklmk*vmkrsfnlkre*nfy*s*erd
*ilnpf*rflqiqfi*sldivvnhtlkqwiiflnsqiqsqksl*ivnslksllikfitil
if*lvklqqflfgseklifqklsshlvnslk**mnqrikf*nflilkkklinsrktfqrf
*rvv*mfyitkwkvvkin*shsknqfqiinillhpfhc*kvh*insllhsrii*ttwkrn
hlhlqmitqpiriltg*flff*nltl*hinnnki*ninq*iyk*iik---

---LIFNPFFFYFIFKKKKKKKKIFFLGSFFFNFFFFFFXSQKKKKKKKKKKKKKKKKKK
KKKKKKKKKKKKKKKKKKK

Frame C:
kvkkkkkkkkkkynii*yyktnk*iikii*nnnfivfskkfnin*lqdrmssqeqqkskq
nqaqegvdgvwlv*ifytfksl*lwfc*win*kg*rmv*ly*rlkfickeyt*iw*kwcc
csw*tts**irti*cys*kg**iw*ywfrysrkes*in*rnw*kfsk*srfss*wfn*ci
cklytkcsnwfstknk*yd*fin*fiittkr**ss**ne**revst*keneifikvkkei
kysihfrdsfkfnsfshwi*w*iilssng*yfstlkfnlknhck*sil*sly*snlsly*
yfswsscssfclvqrn*yfrnshltw*tl*ndk*ikessfrtf*ssrks**tqerpfkdf
kelfrcft*pngrw*r*trviqrisfrssifccilfivrkfik*tlcytqelfrqlgrei
ififk**lnqley*lvdsfffkillsni*iiikyki*inkyinks*k---

---*flilfffilslkkkkkkkkfffwgpffltffffffxpkkkkkkkkkkkkkkkkkkk
kkkkkkkkkkkkkkkkkk

own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U09367-1 (Contig-U09367-1Q)
/CSM_Contig/Contig-U09367-1Q.Seq.d
(1643 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U09367-1 (Contig-U09367-1Q) /CSM_Contig/Conti... 2355 0.0
Contig-U10804-1 (Contig-U10804-1Q) /CSM_Contig/Conti... 40 0.007
Contig-U07707-1 (Contig-U07707-1Q) /CSM_Contig/Conti... 38 0.030
Contig-U12738-1 (Contig-U12738-1Q) /CSM_Contig/Conti... 36 0.12
Contig-U12461-1 (Contig-U12461-1Q) /CSM_Contig/Conti... 36 0.12
Contig-U12319-1 (Contig-U12319-1Q) /CSM_Contig/Conti... 36 0.12
Contig-U11270-1 (Contig-U11270-1Q) /CSM_Contig/Conti... 36 0.12
Contig-U11056-1 (Contig-U11056-1Q) /CSM_Contig/Conti... 36 0.12
Contig-U10772-1 (Contig-U10772-1Q) /CSM_Contig/Conti... 36 0.12
Contig-U10449-1 (Contig-U10449-1Q) /CSM_Contig/Conti... 36 0.12

>Contig-U09367-1 (Contig-U09367-1Q) /CSM_Contig/Contig-U09367-1Q.Seq.d
Length = 1643

Score = 2355 bits (1188), Expect = 0.0
Identities = 1206/1215 (99%)
Strand = Plus / Plus


Query: 129 ataaattaattacaagatagaatgtcatctcaagaacaacaaaaatcaaagcaaaatcaa 188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 ataaattaattacaagatagaatgtcatctcaagaacaacaaaaatcaaagcaaaatcaa 188


Query: 189 gctcaagaaggtgttgacggagtttggttagtataaatattctacactttcaagagttta 248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 gctcaagaaggtgttgacggagtttggttagtataaatattctacactttcaagagttta 248


Query: 249 taattatggttttgttaatggatcaattgaaaagggtaaagaatggtataactatattaa 308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 taattatggttttgttaatggatcaattgaaaagggtaaagaatggtataactatattaa 308


Query: 309 agactcaaattcatatgtaaagagtacacttgaatttggtgaaaatggtgttgttgcagt 368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 agactcaaattcatatgtaaagagtacacttgaatttggtgaaaatggtgttgttgcagt 368


Query: 369 tggtagaccacttcttgataaattagaacaatatgatgttatagttaaaaaggttgatga 428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 tggtagaccacttcttgataaattagaacaatatgatgttatagttaaaaaggttgatga 428


Query: 429 atatggtaatactggtttagatattctcgaaaagaaagttgaatcaattaaagaaactgg 488
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 atatggtaatactggtttagatattctcgaaaagaaagttgaatcaattaaagaaactgg 488


Query: 489 tgaaaatttagcaaataaagcagattcagcagctgatggtttaattagtgtatctgcaaa 548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 tgaaaatttagcaaataaagcagattcagcagctgatggtttaattagtgtatctgcaaa 548


Query: 549 ttatacaccaaatgcagtaattggtttagtacaaaaaacaaataatatgattgattcatt 608
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 ttatacaccaaatgcagtaattggtttagtacaaaaaacaaataatatgattgattcatt 608


Query: 609 aattgattcattattaccaccaaaagatgatgatcaagttaatgaaatgagtgatgaaga 668
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 aattgattcattattaccaccaaaagatgatgatcaagttaatgaaatgagtgatgaaga 668


Query: 669 gaagtttcaacttgaaaagagaatgaaatttttattaaagttaagaaagagattaaatac 728
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 gaagtttcaacttgaaaagagaatgaaatttttattaaagttaagaaagagattaaatac 728


Query: 729 tcaatccattttagagattccttcaaattcaattcatttagtcactggatatagtggtaa 788
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 tcaatccattttagagattccttcaaattcaattcatttagtcactggatatagtggtaa 788


Query: 789 atcatactctcaagcaatggataatatttctcaactctcaaattcaatctcaaaaatcac 848
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 789 atcatactctcaagcaatggataatatttctcaactctcaaattcaatctcaaaaatcac 848


Query: 849 tgtaaatagtcaattctctaaagtctttattgatcaaatttatcactatactgatatttt 908
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 849 tgtaaatagtcaattctctaaagtctttattgatcaaatttatcactatactgatatttt 908


Query: 909 agttggtcaagttgcagcagtttctgtttggttcagagaaattaatatttcagaaactct 968
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 909 agttggtcaagttgcagcagtttctgtttggttcagagaaattaatatttcagaaactct 968


Query: 969 catctcacttggtgaactctctaaaatgataaatgaatcaaagaatcaagttttagaact 1028
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 969 catctcacttggtgaactctctaaaatgataaatgaatcaaagaatcaagttttagaact 1028


Query: 1029 ttctgatcctcaagaaaaagttgataaactcaagaaagacctttcaaagattttaaagag 1088
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1029 ttctgatcctcaagaaaaagttgataaactcaagaaagacctttcaaagattttaaagag 1088


Query: 1089 ttgtttagatgttttacataaccaaatggaaggtggtaaagataaactagagtcattcaa 1148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1089 ttgtttagatgttttacataaccaaatggaaggtggtaaagataaactagagtcattcaa 1148


Query: 1149 agaatcagtttcagatcatcaatattttgttgcatccttttcattgttagaaagttcatt 1208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1149 agaatcagtttcagatcatcaatattttgttgcatccttttcattgttagaaagttcatt 1208


Query: 1209 aaataaactctctgttacactcaagaattatttagacaacttggaagagaaatcatcttc 1268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1209 aaataaactctctgttacactcaagaattatttagacaacttggaagagaaatcatcttc 1268


Query: 1269 atcttcaaatgataactcaaccaattagaatattaactggttgattccnnnnnnnnnaaa 1328
|||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 1269 atcttcaaatgataactcaaccaattagaatattaactggttgattcctttttttttaaa 1328


Query: 1329 atcttactctctaac 1343
|||||||||||||||
Sbjct: 1329 atcttactctctaac 1343


Score = 30.2 bits (15), Expect = 7.2
Identities = 15/15 (100%)
Strand = Plus / Plus


Query: 1415 tttaatttttaatcc 1429
|||||||||||||||
Sbjct: 1415 tttaatttttaatcc 1429


>Contig-U10804-1 (Contig-U10804-1Q) /CSM_Contig/Contig-U10804-1Q.Seq.d
Length = 1746

Score = 40.1 bits (20), Expect = 0.007
Identities = 23/24 (95%)
Strand = Plus / Plus


Query: 153 tcatctcaagaacaacaaaaatca 176
||||||||| ||||||||||||||
Sbjct: 60 tcatctcaacaacaacaaaaatca 83


Score = 32.2 bits (16), Expect = 1.8
Identities = 19/20 (95%)
Strand = Plus / Plus


Query: 1260 atcatcttcatcttcaaatg 1279
|||||| |||||||||||||
Sbjct: 800 atcatcatcatcttcaaatg 819


>Contig-U07707-1 (Contig-U07707-1Q) /CSM_Contig/Contig-U07707-1Q.Seq.d
Length = 2357

Score = 38.2 bits (19), Expect = 0.030
Identities = 19/19 (100%)
Strand = Plus / Minus


Query: 1263 atcttcatcttcaaatgat 1281
|||||||||||||||||||
Sbjct: 454 atcttcatcttcaaatgat 436


Score = 38.2 bits (19), Expect = 0.030
Identities = 19/19 (100%)
Strand = Plus / Minus


Query: 1263 atcttcatcttcaaatgat 1281
|||||||||||||||||||
Sbjct: 1203 atcttcatcttcaaatgat 1185


Score = 30.2 bits (15), Expect = 7.2
Identities = 18/19 (94%)
Strand = Plus / Minus


Query: 603 ttcattaattgattcatta 621
|||||||||||||| ||||
Sbjct: 1329 ttcattaattgattgatta 1311


Score = 30.2 bits (15), Expect = 7.2
Identities = 18/19 (94%)
Strand = Plus / Minus


Query: 603 ttcattaattgattcatta 621
|||||||||||||| ||||
Sbjct: 580 ttcattaattgattgatta 562


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 21,472
Number of Sequences: 6905
Number of extensions: 21472
Number of successful extensions: 2524
Number of sequences better than 10.0: 301
length of query: 1643
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1627
effective length of database: 5,564,391
effective search space: 9053264157
effective search space used: 9053264157
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.15
Homology vs DNA
Query= Contig-U09367-1 (Contig-U09367-1Q) /CSM_Contig/Contig-U09367-1Q.Seq.d
(1643 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(BJ345954) Dictyostelium discoideum cDNA clone:dda29i16, 3' ... 1419 0.0 2
(BJ372140) Dictyostelium discoideum cDNA clone:ddc11n10, 3' ... 1398 0.0 1
(BJ347116) Dictyostelium discoideum cDNA clone:dda26l04, 3' ... 1348 0.0 2
(BJ345586) Dictyostelium discoideum cDNA clone:dda28l02, 3' ... 1340 0.0 1
(BJ402464) Dictyostelium discoideum cDNA clone:dds17d02, 3' ... 1334 0.0 2
(BJ343552) Dictyostelium discoideum cDNA clone:dda16n07, 3' ... 1277 0.0 1
(BJ345155) Dictyostelium discoideum cDNA clone:dda21d24, 3' ... 1273 0.0 1
(AU061427) Dictyostelium discoideum slug cDNA, clone SLE217. 1179 0.0 2
(BJ344238) Dictyostelium discoideum cDNA clone:dda18i23, 3' ... 1166 0.0 1
(BJ402623) Dictyostelium discoideum cDNA clone:dds17d14, 3' ... 1154 0.0 2
(AU034707) Dictyostelium discoideum slug cDNA, clone SLE217. 1084 0.0 1
(BJ433463) Dictyostelium discoideum cDNA clone:ddv21p23, 3' ... 1065 0.0 1
(BJ329752) Dictyostelium discoideum cDNA clone:dda26l04, 5' ... 886 0.0 2
(BJ358801) Dictyostelium discoideum cDNA clone:ddc11n10, 5' ... 1017 0.0 1
(BJ328811) Dictyostelium discoideum cDNA clone:dda29i16, 5' ... 573 0.0 2
(AU268209) Dictyostelium discoideum vegetative cDNA clone:VS... 492 e-138 2
(AU268210) Dictyostelium discoideum vegetative cDNA clone:VS... 492 e-138 2
(AU053142) Dictyostelium discoideum slug cDNA, clone SLF802. 476 e-134 2
(AU072366) Dictyostelium discoideum slug cDNA, clone SSE307. 476 e-129 1
(BJ388988) Dictyostelium discoideum cDNA clone:dds17d02, 5' ... 321 e-110 3
(AU052618) Dictyostelium discoideum slug cDNA, clone SLD606. 313 3e-85 2
(AU061767) Dictyostelium discoideum slug cDNA, clone SLF802. 159 4e-72 2
(BH131150) ENTNE67TR Entamoeba histolytica Sheared DNA Entam... 34 0.046 4
(BH162731) ENTSC47TR Entamoeba histolytica Sheared DNA Entam... 34 0.047 4
(AZ669672) ENTHX38TR Entamoeba histolytica Sheared DNA Entam... 34 0.051 4
(AC117176) Dictyostelium discoideum chromosome 2 map 5018074... 32 0.058 14
(AC189399) Brassica rapa subsp. pekinensis clone KBrB056I08,... 52 0.068 1
(AC189559) Brassica rapa subsp. pekinensis clone KBrH007A03,... 52 0.068 1
(AC189324) Brassica rapa subsp. pekinensis clone KBrB036M09,... 52 0.068 1
(DY894237) CeleSEQ13761 Cunninghamella elegans pBluescript (... 52 0.068 1
(DY893742) CeleSEQ13165 Cunninghamella elegans pBluescript (... 52 0.068 1
(CT573406) Zebrafish DNA sequence from clone CH73-47D17 in l... 50 0.27 1
(BX572641) Zebrafish DNA sequence from clone CH211-213N22 in... 50 0.27 1
(BX470087) Zebrafish DNA sequence from clone CH211-202A10 in... 50 0.27 1
(CR513788) Zebrafish DNA sequence *** SEQUENCING CANCELLED *... 50 0.27 1
(AC195442) Ornithorhynchus anatinus clone OA_Bb-74D16, WORKI... 50 0.27 1
(AL979662) Danio rerio genomic clone DKEY-40E10, genomic sur... 50 0.27 1
(AL954652) Zebrafish DNA sequence from clone CH211-239O15 in... 46 0.52 7
(AC151765) Ornithorhynchus anatinus chromosome UNK clone OAB... 48 1.1 1
(AC009932) Homo sapiens clone 114_O_12, LOW-PASS SEQUENCE SA... 48 1.1 1
(ER399403) 1095349040826 Global-Ocean-Sampling_GS-34-01-01-1... 48 1.1 1
(EJ982727) 1093022164866 Global-Ocean-Sampling_GS-30-02-01-1... 48 1.1 1
(CU161251) Equus caballus GSS, BAC clone CH241-284P23, SP6 e... 48 1.1 1
(CU147968) Equus caballus GSS, BAC clone CH241-278A10, T7 en... 48 1.1 1
(EX848449) CBNC7407.fwd CBNC Phycomyces blakesleeanus NRRL15... 48 1.1 1
(DQ853422) Sulfurihydrogenibium subterraneum ATP citrate lya... 48 1.1 1
(AM666517) Entamoeba terrapinae GSS, clone terra057d04.q1k. 34 1.2 3
(B60921) T19E6TR TAMU Arabidopsis thaliana genomic clone T19... 38 1.3 3
(AL092893) Arabidopsis thaliana genome survey sequence T7 en... 38 1.3 3
(CT813031) Paramecium tetraurelia 5-PRIME EST from clone LK0... 40 1.8 2
(B62716) T19K15TR.1 TAMU Arabidopsis thaliana genomic clone ... 38 2.0 3
(AR545932) Sequence 1063 from patent US 6747137. 40 2.1 3
(AC117075) Dictyostelium discoideum chromosome 2 map 5201047... 36 3.2 13
(AL092935) Arabidopsis thaliana genome survey sequence T7 en... 38 3.3 3
(BX890617) Zebrafish DNA sequence from clone DKEYP-84F11 in ... 46 4.2 1
(AC122232) Mus musculus BAC clone RP23-136G1 from chromosome... 46 4.2 1
(AC163893) Glomus intraradices clone JGIATSX-9C7, complete s... 46 4.2 1
(AC139707) Medicago truncatula clone mth2-16b22, complete se... 46 4.2 1
(AR348565) Sequence 3176 from patent US 6583275. 46 4.2 1
(AC090539) Homo sapiens chromosome 8, clone RP11-759A9, comp... 46 4.2 1
(AC022820) Homo sapiens chromosome 8, clone RP11-46G17, comp... 46 4.2 1
(AC098545) Rattus norvegicus clone CH230-103C1, WORKING DRAF... 46 4.2 1
(CU856683) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 4.2 1
(AZ432031) 1M0217F16F Mouse 10kb plasmid UUGC1M library Mus ... 46 4.2 1
(FH195594) CHO_OF3053xg11r1.ab1 CHO_OF3 Nicotiana tabacum ge... 46 4.2 1
(CT101501) Sus scrofa genomic clone CH242-95O4, genomic surv... 46 4.2 1
(CG835540) ZMMBBc0210K22f ZMMBBc (EcoRI) Zea mays subsp. may... 46 4.2 1
(BW512293) Ciona savignyi cDNA, clone:cscl008a09, 5'end, sin... 46 4.2 1
(AC203524) Spermophilus tridecemlineatus clone VMRC20-577I4,... 34 5.1 6
(AM658057) Entamoeba moshkovskii FIC GSS, clone mosh078a11.p1k. 34 5.5 3
(U51923) Dictyostelium discoideum STE20-telated kinase DPAK1... 40 6.0 2
(AF131221) Dictyostelium discoideum p21-activated protein ki... 40 6.1 2
(ER608763) 1093016292521 Global-Ocean-Sampling_GS-36-01-01-2... 38 6.5 2
(AC016772) Homo sapiens BAC clone RP11-567N19 from 2, comple... 44 7.2 3
(AL357272) Human DNA sequence from clone RP11-111J1 on chrom... 38 8.2 2
(AC226889) Homo sapiens FOSMID clone ABC14-1080022I15 from c... 44 8.4 3
(AB183714) Enterococcus faecium plasmid pHT beta DNA, comple... 34 8.4 7
(EJ456461) 1093017524203 Global-Ocean-Sampling_GS-28-01-01-1... 36 8.7 2
(CL051610) CH216-74D13_RM1.1 CH216 Xenopus (Silurana) tropic... 42 9.8 2

>(BJ345954) Dictyostelium discoideum cDNA clone:dda29i16, 3' end,
single read.
Length = 784

Score = 1419 bits (716), Expect(2) = 0.0
Identities = 716/716 (100%)
Strand = Plus / Minus


Query: 601 gattcattaattgattcattattaccaccaaaagatgatgatcaagttaatgaaatgagt 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 784 gattcattaattgattcattattaccaccaaaagatgatgatcaagttaatgaaatgagt 725


Query: 661 gatgaagagaagtttcaacttgaaaagagaatgaaatttttattaaagttaagaaagaga 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 gatgaagagaagtttcaacttgaaaagagaatgaaatttttattaaagttaagaaagaga 665


Query: 721 ttaaatactcaatccattttagagattccttcaaattcaattcatttagtcactggatat 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 ttaaatactcaatccattttagagattccttcaaattcaattcatttagtcactggatat 605


Query: 781 agtggtaaatcatactctcaagcaatggataatatttctcaactctcaaattcaatctca 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 agtggtaaatcatactctcaagcaatggataatatttctcaactctcaaattcaatctca 545


Query: 841 aaaatcactgtaaatagtcaattctctaaagtctttattgatcaaatttatcactatact 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 aaaatcactgtaaatagtcaattctctaaagtctttattgatcaaatttatcactatact 485


Query: 901 gatattttagttggtcaagttgcagcagtttctgtttggttcagagaaattaatatttca 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 gatattttagttggtcaagttgcagcagtttctgtttggttcagagaaattaatatttca 425


Query: 961 gaaactctcatctcacttggtgaactctctaaaatgataaatgaatcaaagaatcaagtt 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 gaaactctcatctcacttggtgaactctctaaaatgataaatgaatcaaagaatcaagtt 365


Query: 1021 ttagaactttctgatcctcaagaaaaagttgataaactcaagaaagacctttcaaagatt 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 ttagaactttctgatcctcaagaaaaagttgataaactcaagaaagacctttcaaagatt 305


Query: 1081 ttaaagagttgtttagatgttttacataaccaaatggaaggtggtaaagataaactagag 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 ttaaagagttgtttagatgttttacataaccaaatggaaggtggtaaagataaactagag 245


Query: 1141 tcattcaaagaatcagtttcagatcatcaatattttgttgcatccttttcattgttagaa 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 tcattcaaagaatcagtttcagatcatcaatattttgttgcatccttttcattgttagaa 185


Query: 1201 agttcattaaataaactctctgttacactcaagaattatttagacaacttggaagagaaa 1260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 agttcattaaataaactctctgttacactcaagaattatttagacaacttggaagagaaa 125


Query: 1261 tcatcttcatcttcaaatgataactcaaccaattagaatattaactggttgattcc 1316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 tcatcttcatcttcaaatgataactcaaccaattagaatattaactggttgattcc 69

Score = 36.2 bits (18), Expect(2) = 0.0
Identities = 18/18 (100%)
Strand = Plus / Minus


Query: 1326 aaaatcttactctctaac 1343
||||||||||||||||||
Sbjct: 59 aaaatcttactctctaac 42

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,672,311,132
Number of extensions: 103728441
Number of successful extensions: 8618748
Number of sequences better than 10.0: 79
Length of query: 1643
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1619
Effective length of database: 97,308,875,965
Effective search space: 157543070187335
Effective search space used: 157543070187335
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 6.25
Homology vs Protein
Query= Contig-U09367-1 (Contig-U09367-1Q) /CSM_Contig/Contig-U09367-1Q.Seq.d
(1643 letters)

Database: nrp_A
3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

BC056585_1(BC056585|pid:none) Danio rerio si:rp71-61h23.4, mRNA ... 49 5e-04
AX025098_1(AX025098|pid:none) Sequence 22 from Patent WO0031532. 48 0.001
(Q99541) RecName: Full=Adipophilin; AltName: Full=Adipose differ... 46 0.003
EU809925_1(EU809925|pid:none) Manduca sexta lipid storage drople... 46 0.003
CR860938_1(CR860938|pid:none) Pongo abelii mRNA; cDNA DKFZp469H1... 45 0.010
AK297920_1(AK297920|pid:none) Homo sapiens cDNA FLJ59123 complet... 44 0.017
EU620700_1(EU620700|pid:none) Gallus gallus adipocyte differenti... 43 0.029
CR859455_1(CR859455|pid:none) Pongo abelii mRNA; cDNA DKFZp469F1... 43 0.029
FM991731_1(FM991731|pid:none) Sus scrofa M6PRBP1 gene for mannos... 43 0.038
(Q5BLZ2) RecName: Full=Mannose-6-phosphate receptor-binding prot... 41 0.11
AF267202_2(AF267202|pid:none) Candidatus Carsonella ruddii natur... 40 0.19
AB168937_1(AB168937|pid:none) Macaca fascicularis testis cDNA, c... 40 0.25
AF057140_1(AF057140|pid:none) Homo sapiens cargo selection prote... 40 0.32
AF486555_2(AF486555|pid:none) Campylobacter jejuni strain RM2232... 39 0.42
AY892760_1(AY892760|pid:none) Synthetic construct Homo sapiens c... 39 0.42
AK223054_1(AK223054|pid:none) Homo sapiens mRNA for mannose 6 ph... 39 0.42
AE014298_2186(AE014298|pid:none) Drosophila melanogaster chromos... 38 0.94
CR392007_1(CR392007|pid:none) Zebrafish DNA sequence from clone ... 38 0.94
BC046724_1(BC046724|pid:none) Xenopus laevis similar to cargo se... 38 1.2
AL591206_7(AL591206|pid:none) Human DNA sequence from clone RP11... 37 1.6
AL591206_6(AL591206|pid:none) Human DNA sequence from clone RP11... 37 1.6
(Q9DBG5) RecName: Full=Mannose-6-phosphate receptor-binding prot... 37 1.6
AK049537_1(AK049537|pid:none) Mus musculus 7 days embryo whole b... 37 1.6
AM910989_115(AM910989|pid:none) Plasmodium knowlesi strain H chr... 37 2.1
CU466930_1042(CU466930|pid:none) Candidatus Cloacamonas acidamin... 37 2.1
CP000879_1191(CP000879|pid:none) Petrotoga mobilis SJ95, complet... 37 2.7
BC104531_1(BC104531|pid:none) Bos taurus mannose-6-phosphate rec... 36 3.6
CP000950_2635(CP000950|pid:none) Yersinia pseudotuberculosis YPI... 36 3.6
DQ257436_1(DQ257436|pid:none) Mus musculus TIP47 protein isoform... 36 3.6
CP000356_2038(CP000356|pid:none) Sphingopyxis alaskensis RB2256,... 36 3.6
AM398681_2047(AM398681|pid:none) Flavobacterium psychrophilum JI... 36 4.7
CP000305_2584(CP000305|pid:none) Yersinia pestis Nepal516, compl... 35 6.1
CP000901_1780(CP000901|pid:none) Yersinia pestis Angola, complet... 35 6.1
AE009952_2741(AE009952|pid:none) Yersinia pestis KIM, complete g... 35 6.1
AL844505_120(AL844505|pid:none) Plasmodium falciparum 3D7 chromo... 35 8.0
AF239708_1(AF239708|pid:none) Bos taurus adipose differentiation... 35 8.0
(Q9TUM6) RecName: Full=Adipophilin; AltName: Full=Adipose differ... 35 8.0

>BC056585_1(BC056585|pid:none) Danio rerio si:rp71-61h23.4, mRNA
(cDNA clone IMAGE:6793027), partial cds.
Length = 424

Score = 48.9 bits (115), Expect = 5e-04
Identities = 45/179 (25%), Positives = 82/179 (45%), Gaps = 11/179 (6%)
Frame = +1

Query: 163 NNKNQSKIKLKKVLTEFG*YKYSTLSRVYNYGFVNGSIEKGKEWYNYIKDSNSYVKSTLE 342
NN+ +K + E + S +SRV N V+ + Y+ KDS +K +E
Sbjct: 6 NNRMADNVKTAEKDKEDSQEQQSVISRVGNLPLVSSACGAVYNAYSSTKDSVPLLKGVME 65

Query: 343 FGENGVVAVG-------RPLLDKLEQYDVIVKKVDEYGNTGLDILEKKVESIKETGENLA 501
E+GV +G +P+LD+LE + V+EY GL+ +E + +++ A
Sbjct: 66 VAESGVRTLGAAASTGSKPILDRLEPQ---IAAVNEYAIKGLEKVEGNLPILQQP----A 118

Query: 502 NKADSAADGLISVSANYTPNAVIGL----VQKTNNMIDSLIDSLLPPKDDDQVNEMSDE 666
+K S G++ S +AV+G V+KT + I++++ + V+ D+
Sbjct: 119 DKLVSDTVGMVYQSVTGAKDAVVGAVMEGVEKTRMAVTGGINTVMGSRVGQMVSNGVDK 177

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 1,473,861,679
Number of extensions: 22818214
Number of successful extensions: 74415
Number of sequences better than 10.0: 37
Number of HSP's gapped: 74336
Number of HSP's successfully gapped: 37
Length of query: 547
Length of database: 1,040,966,779
Length adjustment: 134
Effective length of query: 413
Effective length of database: 611,592,589
Effective search space: 252587739257
Effective search space used: 252587739257
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.97 gvh: 0.49 alm: 0.29 top: 1.00 tms: 0.07 mit: 0.36 mip: 0.00
nuc: 4.34 erl: 0.00 erm: 1.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 1.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

52.0 %: nuclear
16.0 %: mitochondrial
12.0 %: cytoplasmic
8.0 %: plasma membrane
8.0 %: peroxisomal
4.0 %: endoplasmic reticulum

>> prediction for Contig-U09367-1 is nuc

VS (DIR, S) 1
VH (FL, L) 0
VF (FL, S) 1
AH (FL, L) 0
AF (FL, S) 5
SL (DIR, L) 3
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 2
CH (FL, L) 0
CF (FL, S) 1
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0