Contig-U09367-1 |
Contig ID |
Contig-U09367-1 |
Contig update |
2002. 9.13 |
Contig sequence |
 |
Gap |
gap included |
Contig length |
1633 |
Chromosome number (1..6, M) |
3 |
Chromosome length |
6358359 |
Start point |
2487801 |
End point |
2489370 |
Strand (PLUS/MINUS) |
PLUS |
Number of clones |
14 |
Number of EST |
20 |
Link to clone list |
U09367 |
List of clone(s) |
 |
Translated Amino Acid sequence |
 |
Translated Amino Acid sequence (All Frames) |
 |
own update |
2004. 6.10 |
Homology vs CSM-cDNA |
 |
dna update |
2008.11.15 |
Homology vs DNA |
 Query= Contig-U09367-1 (Contig-U09367-1Q) /CSM_Contig/Contig-U09367-1Q.Seq.d (1643 letters)
Database: ddbj_A 92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(BJ345954) Dictyostelium discoideum cDNA clone:dda29i16, 3' ... 1419 0.0 2 (BJ372140) Dictyostelium discoideum cDNA clone:ddc11n10, 3' ... 1398 0.0 1 (BJ347116) Dictyostelium discoideum cDNA clone:dda26l04, 3' ... 1348 0.0 2 (BJ345586) Dictyostelium discoideum cDNA clone:dda28l02, 3' ... 1340 0.0 1 (BJ402464) Dictyostelium discoideum cDNA clone:dds17d02, 3' ... 1334 0.0 2 (BJ343552) Dictyostelium discoideum cDNA clone:dda16n07, 3' ... 1277 0.0 1 (BJ345155) Dictyostelium discoideum cDNA clone:dda21d24, 3' ... 1273 0.0 1 (AU061427) Dictyostelium discoideum slug cDNA, clone SLE217. 1179 0.0 2 (BJ344238) Dictyostelium discoideum cDNA clone:dda18i23, 3' ... 1166 0.0 1 (BJ402623) Dictyostelium discoideum cDNA clone:dds17d14, 3' ... 1154 0.0 2 (AU034707) Dictyostelium discoideum slug cDNA, clone SLE217. 1084 0.0 1 (BJ433463) Dictyostelium discoideum cDNA clone:ddv21p23, 3' ... 1065 0.0 1 (BJ329752) Dictyostelium discoideum cDNA clone:dda26l04, 5' ... 886 0.0 2 (BJ358801) Dictyostelium discoideum cDNA clone:ddc11n10, 5' ... 1017 0.0 1 (BJ328811) Dictyostelium discoideum cDNA clone:dda29i16, 5' ... 573 0.0 2 (AU268209) Dictyostelium discoideum vegetative cDNA clone:VS... 492 e-138 2 (AU268210) Dictyostelium discoideum vegetative cDNA clone:VS... 492 e-138 2 (AU053142) Dictyostelium discoideum slug cDNA, clone SLF802. 476 e-134 2 (AU072366) Dictyostelium discoideum slug cDNA, clone SSE307. 476 e-129 1 (BJ388988) Dictyostelium discoideum cDNA clone:dds17d02, 5' ... 321 e-110 3 (AU052618) Dictyostelium discoideum slug cDNA, clone SLD606. 313 3e-85 2 (AU061767) Dictyostelium discoideum slug cDNA, clone SLF802. 159 4e-72 2 (BH131150) ENTNE67TR Entamoeba histolytica Sheared DNA Entam... 34 0.046 4 (BH162731) ENTSC47TR Entamoeba histolytica Sheared DNA Entam... 34 0.047 4 (AZ669672) ENTHX38TR Entamoeba histolytica Sheared DNA Entam... 34 0.051 4 (AC117176) Dictyostelium discoideum chromosome 2 map 5018074... 32 0.058 14 (AC189399) Brassica rapa subsp. pekinensis clone KBrB056I08,... 52 0.068 1 (AC189559) Brassica rapa subsp. pekinensis clone KBrH007A03,... 52 0.068 1 (AC189324) Brassica rapa subsp. pekinensis clone KBrB036M09,... 52 0.068 1 (DY894237) CeleSEQ13761 Cunninghamella elegans pBluescript (... 52 0.068 1 (DY893742) CeleSEQ13165 Cunninghamella elegans pBluescript (... 52 0.068 1 (CT573406) Zebrafish DNA sequence from clone CH73-47D17 in l... 50 0.27 1 (BX572641) Zebrafish DNA sequence from clone CH211-213N22 in... 50 0.27 1 (BX470087) Zebrafish DNA sequence from clone CH211-202A10 in... 50 0.27 1 (CR513788) Zebrafish DNA sequence *** SEQUENCING CANCELLED *... 50 0.27 1 (AC195442) Ornithorhynchus anatinus clone OA_Bb-74D16, WORKI... 50 0.27 1 (AL979662) Danio rerio genomic clone DKEY-40E10, genomic sur... 50 0.27 1 (AL954652) Zebrafish DNA sequence from clone CH211-239O15 in... 46 0.52 7 (AC151765) Ornithorhynchus anatinus chromosome UNK clone OAB... 48 1.1 1 (AC009932) Homo sapiens clone 114_O_12, LOW-PASS SEQUENCE SA... 48 1.1 1 (ER399403) 1095349040826 Global-Ocean-Sampling_GS-34-01-01-1... 48 1.1 1 (EJ982727) 1093022164866 Global-Ocean-Sampling_GS-30-02-01-1... 48 1.1 1 (CU161251) Equus caballus GSS, BAC clone CH241-284P23, SP6 e... 48 1.1 1 (CU147968) Equus caballus GSS, BAC clone CH241-278A10, T7 en... 48 1.1 1 (EX848449) CBNC7407.fwd CBNC Phycomyces blakesleeanus NRRL15... 48 1.1 1 (DQ853422) Sulfurihydrogenibium subterraneum ATP citrate lya... 48 1.1 1 (AM666517) Entamoeba terrapinae GSS, clone terra057d04.q1k. 34 1.2 3 (B60921) T19E6TR TAMU Arabidopsis thaliana genomic clone T19... 38 1.3 3 (AL092893) Arabidopsis thaliana genome survey sequence T7 en... 38 1.3 3 (CT813031) Paramecium tetraurelia 5-PRIME EST from clone LK0... 40 1.8 2 (B62716) T19K15TR.1 TAMU Arabidopsis thaliana genomic clone ... 38 2.0 3 (AR545932) Sequence 1063 from patent US 6747137. 40 2.1 3 (AC117075) Dictyostelium discoideum chromosome 2 map 5201047... 36 3.2 13 (AL092935) Arabidopsis thaliana genome survey sequence T7 en... 38 3.3 3 (BX890617) Zebrafish DNA sequence from clone DKEYP-84F11 in ... 46 4.2 1 (AC122232) Mus musculus BAC clone RP23-136G1 from chromosome... 46 4.2 1 (AC163893) Glomus intraradices clone JGIATSX-9C7, complete s... 46 4.2 1 (AC139707) Medicago truncatula clone mth2-16b22, complete se... 46 4.2 1 (AR348565) Sequence 3176 from patent US 6583275. 46 4.2 1 (AC090539) Homo sapiens chromosome 8, clone RP11-759A9, comp... 46 4.2 1 (AC022820) Homo sapiens chromosome 8, clone RP11-46G17, comp... 46 4.2 1 (AC098545) Rattus norvegicus clone CH230-103C1, WORKING DRAF... 46 4.2 1 (CU856683) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 4.2 1 (AZ432031) 1M0217F16F Mouse 10kb plasmid UUGC1M library Mus ... 46 4.2 1 (FH195594) CHO_OF3053xg11r1.ab1 CHO_OF3 Nicotiana tabacum ge... 46 4.2 1 (CT101501) Sus scrofa genomic clone CH242-95O4, genomic surv... 46 4.2 1 (CG835540) ZMMBBc0210K22f ZMMBBc (EcoRI) Zea mays subsp. may... 46 4.2 1 (BW512293) Ciona savignyi cDNA, clone:cscl008a09, 5'end, sin... 46 4.2 1 (AC203524) Spermophilus tridecemlineatus clone VMRC20-577I4,... 34 5.1 6 (AM658057) Entamoeba moshkovskii FIC GSS, clone mosh078a11.p1k. 34 5.5 3 (U51923) Dictyostelium discoideum STE20-telated kinase DPAK1... 40 6.0 2 (AF131221) Dictyostelium discoideum p21-activated protein ki... 40 6.1 2 (ER608763) 1093016292521 Global-Ocean-Sampling_GS-36-01-01-2... 38 6.5 2 (AC016772) Homo sapiens BAC clone RP11-567N19 from 2, comple... 44 7.2 3 (AL357272) Human DNA sequence from clone RP11-111J1 on chrom... 38 8.2 2 (AC226889) Homo sapiens FOSMID clone ABC14-1080022I15 from c... 44 8.4 3 (AB183714) Enterococcus faecium plasmid pHT beta DNA, comple... 34 8.4 7 (EJ456461) 1093017524203 Global-Ocean-Sampling_GS-28-01-01-1... 36 8.7 2 (CL051610) CH216-74D13_RM1.1 CH216 Xenopus (Silurana) tropic... 42 9.8 2
>(BJ345954) Dictyostelium discoideum cDNA clone:dda29i16, 3' end, single read. Length = 784
Score = 1419 bits (716), Expect(2) = 0.0 Identities = 716/716 (100%) Strand = Plus / Minus
Query: 601 gattcattaattgattcattattaccaccaaaagatgatgatcaagttaatgaaatgagt 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 784 gattcattaattgattcattattaccaccaaaagatgatgatcaagttaatgaaatgagt 725
Query: 661 gatgaagagaagtttcaacttgaaaagagaatgaaatttttattaaagttaagaaagaga 720 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 724 gatgaagagaagtttcaacttgaaaagagaatgaaatttttattaaagttaagaaagaga 665
Query: 721 ttaaatactcaatccattttagagattccttcaaattcaattcatttagtcactggatat 780 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 664 ttaaatactcaatccattttagagattccttcaaattcaattcatttagtcactggatat 605
Query: 781 agtggtaaatcatactctcaagcaatggataatatttctcaactctcaaattcaatctca 840 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 604 agtggtaaatcatactctcaagcaatggataatatttctcaactctcaaattcaatctca 545
Query: 841 aaaatcactgtaaatagtcaattctctaaagtctttattgatcaaatttatcactatact 900 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 544 aaaatcactgtaaatagtcaattctctaaagtctttattgatcaaatttatcactatact 485
Query: 901 gatattttagttggtcaagttgcagcagtttctgtttggttcagagaaattaatatttca 960 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 484 gatattttagttggtcaagttgcagcagtttctgtttggttcagagaaattaatatttca 425
Query: 961 gaaactctcatctcacttggtgaactctctaaaatgataaatgaatcaaagaatcaagtt 1020 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 424 gaaactctcatctcacttggtgaactctctaaaatgataaatgaatcaaagaatcaagtt 365
Query: 1021 ttagaactttctgatcctcaagaaaaagttgataaactcaagaaagacctttcaaagatt 1080 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 364 ttagaactttctgatcctcaagaaaaagttgataaactcaagaaagacctttcaaagatt 305
Query: 1081 ttaaagagttgtttagatgttttacataaccaaatggaaggtggtaaagataaactagag 1140 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 304 ttaaagagttgtttagatgttttacataaccaaatggaaggtggtaaagataaactagag 245
Query: 1141 tcattcaaagaatcagtttcagatcatcaatattttgttgcatccttttcattgttagaa 1200 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 244 tcattcaaagaatcagtttcagatcatcaatattttgttgcatccttttcattgttagaa 185
Query: 1201 agttcattaaataaactctctgttacactcaagaattatttagacaacttggaagagaaa 1260 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 184 agttcattaaataaactctctgttacactcaagaattatttagacaacttggaagagaaa 125
Query: 1261 tcatcttcatcttcaaatgataactcaaccaattagaatattaactggttgattcc 1316 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 124 tcatcttcatcttcaaatgataactcaaccaattagaatattaactggttgattcc 69
Score = 36.2 bits (18), Expect(2) = 0.0 Identities = 18/18 (100%) Strand = Plus / Minus
Query: 1326 aaaatcttactctctaac 1343 |||||||||||||||||| Sbjct: 59 aaaatcttactctctaac 42
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 92845959 Number of Hits to DB: 1,672,311,132 Number of extensions: 103728441 Number of successful extensions: 8618748 Number of sequences better than 10.0: 79 Length of query: 1643 Length of database: 95,242,211,685 Length adjustment: 24 Effective length of query: 1619 Effective length of database: 97,308,875,965 Effective search space: 157543070187335 Effective search space used: 157543070187335 X1: 11 (21.8 bits) S2: 22 (44.1 bits)
|
protein update |
2009. 6.25 |
Homology vs Protein |
 |
PSORT |
 |
VS (DIR, S) |
1 |
VH (FL, L) |
0 |
VF (FL, S) |
1 |
AH (FL, L) |
0 |
AF (FL, S) |
5 |
SL (DIR, L) |
3 |
SS (DIR, S) |
1 |
SH (FL, L) |
0 |
SF (FL, S) |
2 |
CH (FL, L) |
0 |
CF (FL, S) |
1 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |