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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U01821-1
Contig ID Contig-U01821-1
Contig update 2001. 8.29
Contig sequence 
>Contig-U01821-1 (Contig-U01821-1Q) /CSM_Contig/Contig-U01821-1Q.Seq.d
CATCACCATCTCTAATACCATCATTATTAGTAAGGATACCTACAAATATT
CCTTCGTTATCTCGAATACCAGCAACTACAAACATTCCAAAACCAATGTT
CATACTGGTGGCATATCAAAGAAAAGAGAACTTGGTCTTGCAAAAGATTT
TGAAAAGTTTATTTTAAATCAATATAATTTCTTTAGTGTTTTAAATCAAT
TAGGTGATTTAGAAGAATTAGGTTATAAACTGTCAAAAGAATACGTCAGG
TTTATGTTGTTAAAGATGTTAGTTTCAAATGAGGAAGGTAAAGATGAAGG
AGGAATAAAATTAAAAGCTCCAGAAAAGATCCAGAAATTTTGGTTTCTTC
ATTACCATCAAAAAGAAAAGTATATAGAATTTTGCCGCTTATTAATCATG
AACAAACACAACTATCAGGTTTTTGAAGATTGTAAATTGAAAAGTATTAT
ATTTTTTGAAACTCCAACAGATGACCAAAACAATAATAATATTGGTTACG
AGAAAACCTACAAATTATATTTGGATATATTTGGTGGGTTTGGTTATAAT
GGTATTTGGGATCTCCCTATCGAATGTAAATAAATAAAAATAAAATAAAA
TAAAATTAAATATAAA
Gap no gap
Contig length 616
Chromosome number (1..6, M) 1
Chromosome length 4919822
Start point 922261
End point 922878
Strand (PLUS/MINUS) PLUS
Number of clones 1
Number of EST 1
Link to clone list U01821
List of clone(s) 

est1=SSI191Z,1,617
Translated Amino Acid sequence 
ITISNTIIISKDTYKYSFVISNTSNYKHSKTNVHTGGISKKRELGLAKDFEKFILNQYNF
FSVLNQLGDLEELGYKLSKEYVRFMLLKMLVSNEEGKDEGGIKLKAPEKIQKFWFLHYHQ
KEKYIEFCRLLIMNKHNYQVFEDCKLKSIIFFETPTDDQNNNNIGYEKTYKLYLDIFGGF
GYNGIWDLPIECK*ikik*nkikyk
Translated Amino Acid sequence (All Frames) 
Frame A:
hhhl*yhhy**gylqiflryleyqqlqtfqnqcsywwhikekrtwsckrf*kvyfksi*f
l*cfksir*frrirl*tvkrirqvyvvkdvsfk*gr*r*rrnkikssrkdpeilvsslps
krkvyrilplinheqtqlsgf*rl*iekyyif*nsnr*pkq**ywlrenlqiifgyiwwv
wl*wylgspyrm*inknkik*n*i*


Frame B:
ITISNTIIISKDTYKYSFVISNTSNYKHSKTNVHTGGISKKRELGLAKDFEKFILNQYNF
FSVLNQLGDLEELGYKLSKEYVRFMLLKMLVSNEEGKDEGGIKLKAPEKIQKFWFLHYHQ
KEKYIEFCRLLIMNKHNYQVFEDCKLKSIIFFETPTDDQNNNNIGYEKTYKLYLDIFGGF
GYNGIWDLPIECK*ikik*nkikyk


Frame C:
spslipsllvriptnipslsripattnipkpmfilvayqrkenlvlqkilkslf*iniis
lvf*in*vi*kn*vincqkntsglcc*rc*fqmrkvkmkee*n*klqkrsrnfgffitik
kksi*nfaay*s*tnttirflkivn*kvlyflklqqmtktiiilvtrkptnyiwiylvgl
vimvfgislsnvnk*k*nkiklni
own update 2004. 6. 7
Homology vs CSM-cDNA 
Query= Contig-U01821-1 (Contig-U01821-1Q)
/CSM_Contig/Contig-U01821-1Q.Seq.d
         (616 letters)

Database: CSM
           8361 sequences; 7,895,291 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U01821-1 (Contig-U01821-1Q) /CSM_Contig/Conti...  1142  0.0
Contig-U07740-1 (Contig-U07740-1Q) /CSM_Contig/Conti...    40  0.004
Contig-U00491-1 (Contig-U00491-1Q) /CSM_Contig/Conti...    38  0.015
Contig-U12301-1 (Contig-U12301-1Q) /CSM_Contig/Conti...    36  0.060
Contig-U12266-1 (Contig-U12266-1Q) /CSM_Contig/Conti...    36  0.060
Contig-U11406-1 (Contig-U11406-1Q) /CSM_Contig/Conti...    36  0.060
Contig-U11010-1 (Contig-U11010-1Q) /CSM_Contig/Conti...    36  0.060
Contig-U10433-1 (Contig-U10433-1Q) /CSM_Contig/Conti...    36  0.060
Contig-U14215-1 (Contig-U14215-1Q) /CSM_Contig/Conti...    34  0.24
Contig-U13665-1 (Contig-U13665-1Q) /CSM_Contig/Conti...    34  0.24

>Contig-U01821-1 (Contig-U01821-1Q) /CSM_Contig/Contig-U01821-1Q.Seq.d
          Length = 616

 Score = 1142 bits (576), Expect = 0.0
 Identities = 576/576 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   catcaccatctctaataccatcattattagtaaggatacctacaaatattccttcgttat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   catcaccatctctaataccatcattattagtaaggatacctacaaatattccttcgttat 60

                                                                       
Query: 61  ctcgaataccagcaactacaaacattccaaaaccaatgttcatactggtggcatatcaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  ctcgaataccagcaactacaaacattccaaaaccaatgttcatactggtggcatatcaaa 120

                                                                       
Query: 121 gaaaagagaacttggtcttgcaaaagattttgaaaagtttattttaaatcaatataattt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gaaaagagaacttggtcttgcaaaagattttgaaaagtttattttaaatcaatataattt 180

                                                                       
Query: 181 ctttagtgttttaaatcaattaggtgatttagaagaattaggttataaactgtcaaaaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ctttagtgttttaaatcaattaggtgatttagaagaattaggttataaactgtcaaaaga 240

                                                                       
Query: 241 atacgtcaggtttatgttgttaaagatgttagtttcaaatgaggaaggtaaagatgaagg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 atacgtcaggtttatgttgttaaagatgttagtttcaaatgaggaaggtaaagatgaagg 300

                                                                       
Query: 301 aggaataaaattaaaagctccagaaaagatccagaaattttggtttcttcattaccatca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 aggaataaaattaaaagctccagaaaagatccagaaattttggtttcttcattaccatca 360

                                                                       
Query: 361 aaaagaaaagtatatagaattttgccgcttattaatcatgaacaaacacaactatcaggt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 aaaagaaaagtatatagaattttgccgcttattaatcatgaacaaacacaactatcaggt 420

                                                                       
Query: 421 ttttgaagattgtaaattgaaaagtattatattttttgaaactccaacagatgaccaaaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ttttgaagattgtaaattgaaaagtattatattttttgaaactccaacagatgaccaaaa 480

                                                                       
Query: 481 caataataatattggttacgagaaaacctacaaattatatttggatatatttggtgggtt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 caataataatattggttacgagaaaacctacaaattatatttggatatatttggtgggtt 540

                                               
Query: 541 tggttataatggtatttgggatctccctatcgaatg 576
           ||||||||||||||||||||||||||||||||||||
Sbjct: 541 tggttataatggtatttgggatctccctatcgaatg 576


>Contig-U07740-1 (Contig-U07740-1Q) /CSM_Contig/Contig-U07740-1Q.Seq.d
          Length = 2173

 Score = 40.1 bits (20), Expect = 0.004
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 1    catcaccatctctaataccatcat 24
            ||||||||||| ||||||||||||
Sbjct: 1118 catcaccatctttaataccatcat 1141


>Contig-U00491-1 (Contig-U00491-1Q) /CSM_Contig/Contig-U00491-1Q.Seq.d
          Length = 1294

 Score = 38.2 bits (19), Expect = 0.015
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 287  ggtaaagatgaaggaggaa 305
            |||||||||||||||||||
Sbjct: 1127 ggtaaagatgaaggaggaa 1109


  Database: CSM
    Posted date:  Jun 7, 2004  8:33 AM
  Number of letters in database: 7,895,291
  Number of sequences in database:  8361
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 15,599
Number of Sequences: 8361
Number of extensions: 15599
Number of successful extensions: 2114
Number of sequences better than 10.0: 203
length of query: 616
length of database: 7,895,291
effective HSP length: 16
effective length of query: 600
effective length of database: 7,761,515
effective search space: 4656909000
effective search space used: 4656909000
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 5. 8
Homology vs DNA 
Query= Contig-U01821-1 (Contig-U01821-1Q) /CSM_Contig/Contig-U01821-1Q.Seq.d
         (616 letters)

Database: ddbj_A
           102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(C90180) Dictyostelium discoideum slug cDNA, clone SSI191.       1142   0.0    1
(CT954267) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    54   0.006  1
(EC823004) SME00000912 esmbsro2 Sawyeria marylandensis cDNA,...    44   0.013  2
(EJ641730) 1093011953681 Global-Ocean-Sampling_GS-29-01-01-1...    52   0.026  1
(EJ568520) 1092960012800 Global-Ocean-Sampling_GS-29-01-01-1...    52   0.026  1
(EJ565841) 1092959713401 Global-Ocean-Sampling_GS-29-01-01-1...    52   0.026  1
(CU062433) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   0.032  3
(AC013823) Homo sapiens clone RP11-22E5, WORKING DRAFT SEQUE...    40   0.040  6
(CU469367) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    50   0.10   1
(CT962497) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    50   0.10   1
(FM992693) Candida dubliniensis CD36 chromosome 6, complete ...    36   0.22   12
(CP000382) Clostridium novyi NT, complete genome.                  42   0.38   14
(Z98877) Caenorhabditis elegans YAC Y69H2.                         46   0.39   4
(AC131409) Rattus norvegicus clone CH230-75P18, *** SEQUENCI...    48   0.40   1
(AC121017) Rattus norvegicus clone CH230-459H13, WORKING DRA...    48   0.40   1
(AC107177) Rattus norvegicus clone CH230-208E5, WORKING DRAF...    48   0.40   1
(AC096184) Rattus norvegicus clone CH230-32J6, *** SEQUENCIN...    48   0.40   1
(EK547636) 1095516101766 Global-Ocean-Sampling_GS-32-01-01-1...    48   0.40   1
(FD985929) RR4H915JQB RR4(PB) Raphanus raphanistrum subsp. l...    48   0.40   1
(FD984284) RR4GM42JQ RR4(PB) Raphanus raphanistrum subsp. la...    48   0.40   1
(FD959237) RR1G731JQ RR1(CS) Raphanus raphanistrum subsp. ma...    48   0.40   1
(FD959024) RR1G407JQ RR1(CS) Raphanus raphanistrum subsp. ma...    48   0.40   1
(FD567804) RS1FM16JQ RS1(AR) Raphanus sativus var. oleiformi...    48   0.40   1
(EY937904) RS2DD59TF RS2(RS) Raphanus sativus cDNA 5', mRNA ...    48   0.40   1
(EY934725) RS2DM14JQ RS2(RS) Raphanus sativus cDNA 3', mRNA ...    48   0.40   1
(EY934144) RS2DD59JQ RS2(RS) Raphanus sativus cDNA 3', mRNA ...    48   0.40   1
(EY919259) RR4DR42JQ RR4(PB) Raphanus raphanistrum subsp. la...    48   0.40   1
(EX751697) RR1C151JQ RR1(CS) Raphanus raphanistrum subsp. ma...    48   0.40   1
(EW724632) RS2AQ32TFB RS2(RS) Raphanus sativus cDNA 5', mRNA...    48   0.40   1
(CR323017) mte1-5L3RM1 BAC end, cultivar Jemalong A17 of Med...    40   0.42   2
(AC171394) Medicago truncatula clone mth2-38p7, WORKING DRAF...    40   0.56   6
(AC185511) Zea mays chromosome 5 clone CH201-339H12; ZMMBBc0...    46   0.61   2
(AC172445) Bos taurus clone CH240-526P18, WORKING DRAFT SEQU...    40   0.63   4
(AC176195) Strongylocentrotus purpuratus clone R3-3066D7, WO...    36   0.68   5
(EW827744) G894P576FC5.T0 Ixodes scapularis Pooled Non-infec...    36   0.75   2
(EW835422) G894P591FD19.T0 Ixodes scapularis Pooled Non-infe...    36   0.82   2
(EW929770) G894P5175FC18.T0 Ixodes scapularis Pooled Non-inf...    36   0.84   2
(EW824290) G894P573FB21.T0 Ixodes scapularis Pooled Non-infe...    36   0.85   2
(EW826329) G894P575FB21.T0 Ixodes scapularis Pooled Non-infe...    36   0.85   2
(EW792902) G893P518FA18.T0 Ixodes scapularis Pooled Non-infe...    36   0.86   2
(EW943055) G894P5192FB1.T0 Ixodes scapularis Pooled Non-infe...    36   0.86   2
(EW824292) G894P573FB22.T0 Ixodes scapularis Pooled Non-infe...    36   0.86   2
(EW799675) G893P536FD18.T0 Ixodes scapularis Pooled Non-infe...    36   0.86   2
(EW853733) G894P5118FK22.T0 Ixodes scapularis Pooled Non-inf...    36   0.87   2
(CP000025) Campylobacter jejuni RM1221, complete genome.           38   1.1    13
(AL929354) Plasmodium falciparum strain 3D7, chromosome 5, s...    32   1.1    10
(CU929108) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    30   1.1    8
(AC204505) Zea mays chromosome 7 clone CH201-416K12; ZMMBBc0...    38   1.1    6
(AX344566) Sequence 17 from Patent WO0200932.                      32   1.3    10
(AC164164) Mus musculus BAC clone RP23-180E6 from chromosome...    46   1.6    1
(AC122461) Mus musculus BAC clone RP24-293D14 from chromosom...    46   1.6    1
(AY094389) Arabidopsis thaliana AT5g08470/MAH20_3 mRNA seque...    46   1.6    1
(AL392174) Arabidopsis thaliana DNA chromosome 5, BAC clone ...    46   1.6    1
(AF275382) Arabidopsis thaliana peroxisome biogenesis protei...    46   1.6    1
(AB006697) Arabidopsis thaliana genomic DNA, chromosome 5, P...    46   1.6    1
(FB894444) Sequence 113717 from Patent WO2008034648.               46   1.6    1
(FB882349) Sequence 101622 from Patent WO2008034648.               46   1.6    1
(FB876540) Sequence 95813 from Patent WO2008034648.                46   1.6    1
(FB873593) Sequence 92866 from Patent WO2008034648.                46   1.6    1
(FB869946) Sequence 89219 from Patent WO2008034648.                46   1.6    1
(FB861971) Sequence 81244 from Patent WO2008034648.                46   1.6    1
(FB854997) Sequence 74270 from Patent WO2008034648.                46   1.6    1
(FB840460) Sequence 59733 from Patent WO2008034648.                46   1.6    1
(FB825452) Sequence 44725 from Patent WO2008034648.                46   1.6    1
(FB822876) Sequence 42149 from Patent WO2008034648.                46   1.6    1
(FB815315) Sequence 34588 from Patent WO2008034648.                46   1.6    1
(FB805903) Sequence 25176 from Patent WO2008034648.                46   1.6    1
(FB781680) Sequence 953 from Patent WO2008034648.                  46   1.6    1
(AX463129) Sequence 1 from Patent WO0248371.                       46   1.6    1
(AR376218) Sequence 1224 from patent US 6605709.                   46   1.6    1
(Z81055) Caenorhabditis elegans Cosmid F01G10.                     46   1.6    1
(AY851478) Ciona intestinalis clone BAC XNE, complete sequence.    46   1.6    1
(AC101479) Mus musculus clone RP23-188A15, LOW-PASS SEQUENCE...    46   1.6    1
(AC207739) Zea mays chromosome 5 clone CH201-29A19; ZMMBBc00...    46   1.6    1
(AC206849) Zea mays chromosome 5 clone ZMMBBb-572K8; ZMMBBb0...    46   1.6    1
(AC195183) Zea mays chromosome 1 clone ZMMBBb-197C2; ZMMBBb0...    46   1.6    1
(AC186528) Zea mays chromosome 1 clone CH201-219E1; ZMMBBc02...    46   1.6    1
(EK472634) 1095469462968 Global-Ocean-Sampling_GS-32-01-01-1...    46   1.6    1
(EJ236556) 1095297005109 Global-Ocean-Sampling_GS-27-01-01-1...    46   1.6    1
(EJ162815) 1092344054687 Global-Ocean-Sampling_GS-27-01-01-1...    46   1.6    1
(CE754229) tigr-gss-dog-17000369642902 Dog Library Canis lup...    46   1.6    1
(BZ414253) if23a08.g1 WGS-ZmaysF (DH5a methyl filtered) Zea ...    46   1.6    1
(BZ350859) ht61f04.g1 WGS-SbicolorF (JM107 adapted methyl fi...    46   1.6    1
(BF217302) 601885647F1 NIH_MGC_57 Homo sapiens cDNA clone IM...    46   1.6    1
(T43478) 6741 Lambda-PRL2 Arabidopsis thaliana cDNA clone 11...    46   1.6    1
(FG085791) CMRC-FF-IH0-acb-d-03-0-CMRC.r1 Ceratitis capitata...    46   1.6    1
(FG070752) UI-FF-IF0-aag-n-20-0-UI.r1 Ceratitis capitata emb...    46   1.6    1
(AM942759) Proteus mirabilis strain HI4320, complete genome.       46   1.6    1
(AC010020) Drosophila melanogaster 3L BAC RP98-26I3 (Roswell...    40   1.8    4
(AC163842) Bos taurus clone CH240-145A17, *** SEQUENCING IN ...    32   1.9    7
(CU013540) M.truncatula DNA sequence *** SEQUENCING IN PROGR...    44   1.9    4
(AC141295) Homo sapiens chromosome 16 clone RP11-588I11, WOR...    36   2.1    5
(CT573354) M.truncatula DNA sequence from clone MTH2-18N13 o...    44   2.2    5
(AC122726) Medicago truncatula chromosome 8 clone mth2-23o24...    40   2.3    6
(CP000814) Campylobacter jejuni subsp. jejuni 81116, complet...    38   2.3    14
(AC180642) Strongylocentrotus purpuratus clone R3-3089N19, W...    38   2.3    4
(AC231686) Equus caballus clone CH241-13H2, WORKING DRAFT SE...    38   2.6    4
(AC124173) Mus musculus BAC clone RP23-173I4 from 13, comple...    32   3.0    2
(AC186209) Canis lupus familiaris chromosome 12 clone XX-260...    34   3.0    2
(AC145239) Pongo abelii clone CH253-184F17, WORKING DRAFT SE...    34   3.1    2
(AL670305) Mouse DNA sequence from clone RP23-225G17 on chro...    32   3.1    2
(AC132604) Mus musculus BAC clone RP24-80P7 from chromosome ...    32   3.1    2
(ER407495) 1095366036008 Global-Ocean-Sampling_GS-34-01-01-1...    38   3.3    2
(EJ499222) 1095403606438 Global-Ocean-Sampling_GS-28-01-01-1...    38   3.3    2
(AC018361) Homo sapiens 3 BAC RP11-41O13 (Roswell Park Cance...    40   3.4    7
(FH532453) CHO_OF4135xc08r1.ab1 CHO_OF4 Nicotiana tabacum ge...    40   3.4    2
(AC211098) Equus caballus clone CH241-7J14, WORKING DRAFT SE...    40   3.5    6
(ET271826) S0072K16_SP6 CHORI-214 Salmo salar genomic clone ...    34   4.1    2
(CC206453) CH261-138K21_Sp6.1 CH261 Gallus gallus genomic cl...    34   4.3    2
(AC206329) Zea mays chromosome 9 clone CH201-240H19; ZMMBBc0...    40   4.6    5
(AE014820) Plasmodium falciparum 3D7 chromosome 14 section 5...    34   4.8    8
(AC166712) Bos taurus clone CH240-186F4, WORKING DRAFT SEQUE...    36   4.8    7
(AC189442) Brassica rapa subsp. pekinensis clone KBrB070J05,...    32   4.8    6
(AC214425) Zea mays chromosome 9 clone CH201-235K12; ZMMBBc0...    40   5.3    5
(CR788308) Zebrafish DNA sequence from clone DKEY-192K19 in ...    44   6.2    1
(BX649566) Zebrafish DNA sequence from clone CH211-15I6 in l...    44   6.2    1
(BX005476) Zebrafish DNA sequence from clone CH211-124K10 in...    44   6.2    1
(AL929075) Zebrafish DNA sequence from clone CH211-132B9 in ...    44   6.2    1
(CT573100) Mouse DNA sequence from clone RP23-218E7 on chrom...    44   6.2    1
(AM477084) Vitis vinifera contig VV78X050214.9, whole genome...    44   6.2    1
(DL128564) SCHIZOPHRENIA RELATED VOLTAGE-GATED ION CHANNEL G...    44   6.2    1
(DI040125) SCHIZOPHRENIA RELATED VOLTAGE-GATED ION CHANNEL G...    44   6.2    1
(AX686783) Sequence 3 from Patent WO02074810.                      44   6.2    1
(AX504841) Sequence 2 from Patent WO0246404.                       44   6.2    1
(AL354891) Human DNA sequence from clone RP11-44I7 on chromo...    44   6.2    1
(AC104812) Homo sapiens BAC clone RP11-656O23 from 2, comple...    44   6.2    1
(AC093260) Homo sapiens chromosome 5 clone RP11-237B16, comp...    44   6.2    1
(AC067967) Homo sapiens chromosome 10 clone RP11-363H6, comp...    44   6.2    1
(AC021538) Homo sapiens chromosome , clone RP11-441N5, compl...    44   6.2    1
(AC020703) Homo sapiens BAC clone RP11-259G7 from 4, complet...    44   6.2    1
(AC008945) Homo sapiens chromosome 5 clone CTD-2325A15, comp...    44   6.2    1
(AC005699) Homo sapiens chromosome 4 clone C0473M13 map 4p16...    44   6.2    1
(AC118957) Rattus norvegicus clone CH230-436C18, WORKING DRA...    44   6.2    1
(AC118787) Rattus norvegicus clone CH230-433F6, *** SEQUENCI...    44   6.2    1
(AC113836) Rattus norvegicus clone CH230-54M10, *** SEQUENCI...    44   6.2    1
(AC068520) Homo sapiens chromosome 2 clone RP11-656O23 map 2...    44   6.2    1
(AC068487) Homo sapiens chromosome 2 clone RP11-649I1, WORKI...    44   6.2    1
(BX897728) Zebrafish DNA sequence *** SEQUENCING CANCELLED *...    44   6.2    1
(AC217213) Equus caballus clone CH241-215F22, WORKING DRAFT ...    44   6.2    1
(AC007140) Homo sapiens chromosome 4, *** SEQUENCING IN PROG...    44   6.2    1
(BH111329) RPCI-24-402K1.TJ RPCI-24 Mus musculus genomic clo...    44   6.2    1
(FH602499) CHO_OF4644xh23r1.ab1 CHO_OF4 Nicotiana tabacum ge...    44   6.2    1
(FH513584) CHO_OF4708xa22r1.ab1 CHO_OF4 Nicotiana tabacum ge...    44   6.2    1
(FH325208) CHO_OF4552xb21f1.ab1 CHO_OF4 Nicotiana tabacum ge...    44   6.2    1
(ER381438) 1094338763042 Global-Ocean-Sampling_GS-34-01-01-1...    44   6.2    1
(AM685540) Entamoeba terrapinae GSS, clone terra126b06.q1k.        44   6.2    1
(AM680508) Entamoeba terrapinae GSS, clone terra177e12.q1k.        44   6.2    1
(AM671282) Entamoeba terrapinae GSS, clone terra217f03.q1k.        44   6.2    1
(EJ155968) 1092344029727 Global-Ocean-Sampling_GS-27-01-01-1...    44   6.2    1
(DU953845) 221878 Tomato MboI BAC Library Solanum lycopersic...    44   6.2    1
(DU788753) APKH2783.b2 HF770_12-21-03 uncultured marine micr...    44   6.2    1
(DU760417) ASNG3156.g2 HF200_10-06-02 uncultured marine micr...    44   6.2    1
(BX171511) Danio rerio genomic clone DKEY-177F22, genomic su...    44   6.2    1
(EL876884) IP06794.3prime IP Drosophila melanogaster iPCR Am...    44   6.2    1
(EL022034) EBENXNS02G82G5 8-day Arabidopsis seedlings, aeria...    44   6.2    1
(EC824040) SME00004487 esmbsro2 Sawyeria marylandensis cDNA,...    44   6.2    1
(DT132865) JGI_ANNO14316.rev ANNO Pimephales promelas Whole ...    44   6.2    1
(DB754371) Apis mellifera head cDNA, RIKEN full-length enric...    44   6.2    1
(DB753118) Apis mellifera head cDNA, RIKEN full-length enric...    44   6.2    1
(FG773807) G1147P356RE8.T0 Anolis carolinensis pooled normal...    44   6.2    1
(FG726234) G1145P36FC7.T0 Anolis carolinensis pooled normali...    44   6.2    1
(FG194662) AGN_PNL222ar1_c6.trimmed.seq AGN_PNL Nicotiana ta...    44   6.2    1
(CP000847) Rickettsia akari str. Hartford, complete genome.        44   6.2    1
(CP000409) Rickettsia canadensis str. McKiel, complete genome.     44   6.2    1
(CP000053) Rickettsia felis URRWXCal2, complete genome.            44   6.2    1
(AJ238763) Rickettsia felis ftsY (partial), polA, dnaE (part...    44   6.2    1
(AE000666) Methanothermobacter thermautotrophicus str. Delta...    44   6.2    1
(AC176793) Strongylocentrotus purpuratus clone R3-3106M5, WO...    42   6.5    2
(DH222789) Oryzias latipes Fosmid clone:GOLWFno552_d11, reve...    38   6.5    2
(DX064469) KBrB071P09R KBrB, Brassica rapa BamHI BAC library...    32   6.7    3
(AB174032) Macaca fascicularis brain cDNA clone: QmoA-11860,...    38   6.8    2
(AC102317) Mus musculus chromosome 18, clone RP24-444M6, com...    40   6.8    3
(CP000102) Methanosphaera stadtmanae DSM 3091, complete genome.    34   6.8    19
(AL772315) Mouse DNA sequence from clone RP23-54A13 on chrom...    42   7.1    3
(AC013258) Arabidopsis thaliana chromosome 1 BAC F9E10 genom...    36   7.3    3
(FP236337) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    34   7.6    4
(U50951) Thermoanaerobacterium thermosulfurigenes orfA gene,...    42   8.0    2
(AC200966) Strongylocentrotus purpuratus clone R3-1116J3, WO...    38   8.2    2
(AF288092) Naegleria gruberi mitochondrial DNA, complete gen...    36   8.5    5
(AL844501) Plasmodium falciparum strain 3D7, chromosome 1.         34   8.7    8
(AC129997) Rattus norvegicus clone CH230-500C17, WORKING DRA...    38   8.8    3
(AL591410) Mouse DNA sequence from clone RP23-96I2 on chromo...    34   9.2    8
(AC154607) Mus musculus BAC clone RP23-331D17 from chromosom...    34   9.3    4
(DX017697) KBrB010E01F KBrB, Brassica rapa BamHI BAC library...    32   9.4    3
(DH602648) Rattus norvegicus DNA, BAC clone: RNB1-129B21, 5'...    40   9.5    2

>(C90180) Dictyostelium discoideum slug cDNA, clone SSI191.
          Length = 617

 Score = 1142 bits (576), Expect = 0.0
 Identities = 576/576 (100%)
 Strand = Plus / Plus


Query: 1   catcaccatctctaataccatcattattagtaaggatacctacaaatattccttcgttat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   catcaccatctctaataccatcattattagtaaggatacctacaaatattccttcgttat 60


Query: 61  ctcgaataccagcaactacaaacattccaaaaccaatgttcatactggtggcatatcaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  ctcgaataccagcaactacaaacattccaaaaccaatgttcatactggtggcatatcaaa 120


Query: 121 gaaaagagaacttggtcttgcaaaagattttgaaaagtttattttaaatcaatataattt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gaaaagagaacttggtcttgcaaaagattttgaaaagtttattttaaatcaatataattt 180


Query: 181 ctttagtgttttaaatcaattaggtgatttagaagaattaggttataaactgtcaaaaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ctttagtgttttaaatcaattaggtgatttagaagaattaggttataaactgtcaaaaga 240


Query: 241 atacgtcaggtttatgttgttaaagatgttagtttcaaatgaggaaggtaaagatgaagg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 atacgtcaggtttatgttgttaaagatgttagtttcaaatgaggaaggtaaagatgaagg 300


Query: 301 aggaataaaattaaaagctccagaaaagatccagaaattttggtttcttcattaccatca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 aggaataaaattaaaagctccagaaaagatccagaaattttggtttcttcattaccatca 360


Query: 361 aaaagaaaagtatatagaattttgccgcttattaatcatgaacaaacacaactatcaggt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 aaaagaaaagtatatagaattttgccgcttattaatcatgaacaaacacaactatcaggt 420


Query: 421 ttttgaagattgtaaattgaaaagtattatattttttgaaactccaacagatgaccaaaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ttttgaagattgtaaattgaaaagtattatattttttgaaactccaacagatgaccaaaa 480


Query: 481 caataataatattggttacgagaaaacctacaaattatatttggatatatttggtgggtt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 caataataatattggttacgagaaaacctacaaattatatttggatatatttggtgggtt 540


Query: 541 tggttataatggtatttgggatctccctatcgaatg 576
           ||||||||||||||||||||||||||||||||||||
Sbjct: 541 tggttataatggtatttgggatctccctatcgaatg 576

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 891,185,822
Number of extensions: 57538391
Number of successful extensions: 5117428
Number of sequences better than 10.0: 185
Length of query: 616
Length of database: 101,790,757,118
Length adjustment: 23
Effective length of query: 593
Effective length of database: 99,442,330,388
Effective search space: 58969301920084
Effective search space used: 58969301920084
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.18
Homology vs Protein 
Query= Contig-U01821-1 (Contig-U01821-1Q) /CSM_Contig/Contig-U01821-1Q.Seq.d
         (616 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC115680_34(AC115680|pid:none) Dictyostelium discoideum chromoso...    40   0.052
AL035476_75(AL035476|pid:none) Plasmodium falciparum MAL4P3.           39   0.15
AE010300_2175(AE010300|pid:none) Leptospira interrogans serovar ...    35   1.3
AC116956_31(AC116956|pid:none) Dictyostelium discoideum chromoso...    35   1.3
AE014185_35(AE014185|pid:none) Plasmodium falciparum 3D7 chromos...    35   1.3
CP000013_624(CP000013|pid:none) Borrelia garinii PBi, complete g...    35   1.3
AP009351_2125(AP009351|pid:none) Staphylococcus aureus subsp. au...    35   1.7
AL844503_164(AL844503|pid:none) Plasmodium falciparum 3D7 chromo...    35   2.2
CP000350_1606(CP000350|pid:none) Leptospira borgpetersenii serov...    35   2.2
AL035476_45(AL035476|pid:none) Plasmodium falciparum MAL4P3.           35   2.2
AL844506_37(AL844506|pid:none) Plasmodium falciparum 3D7 chromos...    34   2.9
FN357387_24(FN357387|pid:none) Schistosoma mansoni genome sequen...    34   3.8
CP001035_5(CP001035|pid:none) Natranaerobius thermophilus JW/NM-...    33   4.9
AF096371_2(AF096371|pid:none) Arabidopsis thaliana BAC T2L5.  &T...    33   4.9
CP000993_344(CP000993|pid:none) Borrelia recurrentis A1, complet...    33   6.4
CP000733_1369(CP000733|pid:none) Coxiella burnetii Dugway 5J108-...    33   6.4
CP000851_1287(CP000851|pid:none) Shewanella pealeana ATCC 700345...    33   6.4
(A9NC46) RecName: Full=Probable nicotinate-nucleotide adenylyltr...    33   6.4
AE016828_484(AE016828|pid:none) Coxiella burnetii RSA 493, compl...    33   6.4
AM459921_1(AM459921|pid:none) Vitis vinifera contig VV78X043722....    33   8.4
AE014188_248(AE014188|pid:none) Plasmodium falciparum 3D7 chromo...    33   8.4

>AC115680_34(AC115680|pid:none) Dictyostelium discoideum chromosome
           2 map 4915084-5005461 strain AX4, complete sequence.
          Length = 895

 Score = 40.0 bits (92), Expect = 0.052
 Identities = 39/149 (26%), Positives = 65/149 (43%), Gaps = 8/149 (5%)
 Frame = +2

Query: 140 AKDFEKFILNQYNFFSVLNQLGDLEEL--------GYKLSKEYVRFMLLKMLVSNEEGKD 295
           AK  E  +L  YN+F +L  +   E          G KL  EY RF+ +K+L ++   KD
Sbjct: 17  AKIIESTLLLTYNYFHILEIVKIYEGNDGRYDGINGMKLVFEYNRFITMKILKNDR--KD 74

Query: 296 EGGIKLKAPEKIQKFWFLHYHQKEKYIEFCRLLIMNKHNYQVFEDCKLKSIIFFETPTDD 475
           E    + A   ++ FW  H    + Y +FC ++    H+  + +         +E    +
Sbjct: 75  E---IVSACPFVRVFWKWHLTNSKAYEQFCNIIGFFIHHTPITDS-------VYELYARE 124

Query: 476 QNNNNIGYEKTYKLYLDIFGGFGYNGIWD 562
            +  NI   KT + Y + F    Y+ IW+
Sbjct: 125 IDERNI---KTIEFYKECFSDINYS-IWN 149

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 984,460,381
Number of extensions: 20535948
Number of successful extensions: 55945
Number of sequences better than 10.0: 21
Number of HSP's gapped: 55915
Number of HSP's successfully gapped: 21
Length of query: 205
Length of database: 1,051,180,864
Length adjustment: 123
Effective length of query: 82
Effective length of database: 653,084,107
Effective search space: 53552896774
Effective search space used: 53552896774
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)
PSORT 

 psg: 0.64  gvh: 0.18  alm: 0.50  top: 0.53  tms: 0.00  mit: 0.35  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: nuclear
	 24.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: peroxisomal

>> prediction for Contig-U01821-1 is nuc
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0