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Dicty_cDB
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U12558-1
Contig ID Contig-U12558-1
Contig update 2002.12.18
Contig sequence 
>Contig-U12558-1 (Contig-U12558-1Q) /CSM_Contig/Contig-U12558-1Q.Seq.d
ATAAGCAACTTTCAAACATATACAAATAAAATAATAATAATAAAAAAAAA
ATGTATTGTCCAAAAGCATATGAAAATGAAAAAAAAAANGAAGATTTANA
ATTTGAAAGAAGTCAATCAACATTTTCAGTTTCANAATTAAATTTTATTT
TAAATAATAANGATCATAATATTATAAATATTAAAAANGAAATTAAAAAA
TTTATNGATAANGATGAAATTATTTCAAAACCNCAAGAAATTCATTTTTT
ATCAANNNNNNNNN----------ACTGCTGATGATGACAATAAACCAAT
TGGTAAATCAGTTAAATATATAAATGATGAATTTCAATCATCATTTGAAA
ATATAAATCAATTCATTCAAGAGAAAGGTTTAAATTCAATAATTCATCCA
GATTCATTATTACAACTTTTTAAACATCGTTCATTCATTTTAATCAAATC
AATTGCTGAATCAATTCAAGAGCAAATGAGTAATGGAAATAAAGATATAC
CACAAATTTGGAGTGATCTTAATGTTGAAATTAATCATTGTAGTAAAGCT
CATTGTCAATTATATGTAATTCAATCATTTTATGATCAAATTTTATTATT
ATCTTCAAATTCTTCAAGTTGTTCTTCATCGATAACCACTGTTTTAATAC
AATTACTTCAAACTTATAGTATTTGGATTATTAATTCAAATTTAGTTGAT
TTCCTTCAAGATCAATATGTTGAACTATCTCAAATTGATTTCTTAAAAAA
GAGTTTAATCAATTTCTATAAATTATTACGTCCAAATTTAGTACCACTAG
TTGATTCATTTGATCTCTGTAATACTACTTTAGGTAGTGCTTTAGGTTCT
TATAATGGTGATGTTTATTCAACTCTTTATAAATGGGCTTCAACTCAACC
ATTTAATAAAAATTCTTTACCATTAGGTTTTAATGAAACTATTAAACCAT
TAATAAATAGTAAACTTTAAAAAAAATAAAAGATTATATTATCATTAATT
ATATTTTTAAAAAAGATTTAATAAAA
Gap gap included
Contig length 1016
Chromosome number (1..6, M) 5
Chromosome length 5062330
Start point 3487814
End point 3486807
Strand (PLUS/MINUS) MINUS
Number of clones 2
Number of EST 3
Link to clone list U12558
List of clone(s) 

est1=VHP431F,1,255
est2=VHC322Z,256,938
est3=VHP431Z,269,1008
Translated Amino Acid sequence 
kqlsniyk*NNNNKKKMYCPKAYENEKKXEDLXFERSQSTFSVSXLNFILNNXDHNIINI
KXEIKKFXDXDEIISKPQEIHFLSXXX---

---TADDDNKPIGKSVKYINDEFQSSFENINQFIQEKGLNSIIHPDSLLQLFKHRSFILI
KSIAESIQEQMSNGNKDIPQIWSDLNVEINHCSKAHCQLYVIQSFYDQILLLSSNSSSCS
SSITTVLIQLLQTYSIWIINSNLVDFLQDQYVELSQIDFLKKSLINFYKLLRPNLVPLVD
SFDLCNTTLGSALGSYNGDVYSTLYKWASTQPFNKNSLPLGFNETIKPLINSKL*kk*ki
ilsliiflkki**
Translated Amino Acid sequence (All Frames) 
Frame A:
isnfqtytnkiiiikkkcivqkhmkmkkkxkixnlkevnqhfqfxn*ilf*iixiiil*i
lkxklknlxixmklfqnxkkfifyqxxx---

---TADDDNKPIGKSVKYINDEFQSSFENINQFIQEKGLNSIIHPDSLLQLFKHRSFILI
KSIAESIQEQMSNGNKDIPQIWSDLNVEINHCSKAHCQLYVIQSFYDQILLLSSNSSSCS
SSITTVLIQLLQTYSIWIINSNLVDFLQDQYVELSQIDFLKKSLINFYKLLRPNLVPLVD
SFDLCNTTLGSALGSYNGDVYSTLYKWASTQPFNKNSLPLGFNETIKPLINSKL*kk*ki
ilsliiflkki**

Frame B:
*atfkhiqik****kknvlsksi*k*kkkxrfxi*kksinifsfxikfyfk**xs*yyky
*kxn*kiyx*x*nyfktxrnsffixxx---

---llmmtinqlvnqlni*mmnfnhhlki*insfkrkv*iq*fiqihyynflnivhsf*s
nqllnqfksk*vmeikiyhkfgvilmlkliivvklivnym*fnhfmikfyyylqilqvvl
hr*plf*ynyfklivfglliqi*lisfkinmlnylklis*krv*sisinyyvqi*yh*li
hlisvill*vvl*vlimvmfiqlfinglqlnhlikilyh*vlmkllnh**ivnfkknkrl
yyh*lyf*krfnk

Frame C:
kqlsniyk*NNNNKKKMYCPKAYENEKKXEDLXFERSQSTFSVSXLNFILNNXDHNIINI
KXEIKKFXDXDEIISKPQEIHFLSXXX---

---c***q*tnw*is*iyk**isiii*kyksihsrerfkfnnssrfiittf*tsfihfnq
inc*insrane*wk*ryttnle*s*c*n*sl**sslsiicnsiil*snfiiifkffklff
idnhcfntitsnl*yldy*fkfs*fpsrsic*tisn*flkkefnqfl*iitskfstts*f
i*sl*yyfr*cfrfl*w*clfnsl*mgfnsti**kfftirf**ny*tink**tlkkikdy
iiinyifkkdlik
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U12558-1 (Contig-U12558-1Q)
/CSM_Contig/Contig-U12558-1Q.Seq.d
         (1026 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U12558-1 (Contig-U12558-1Q) /CSM_Contig/Conti...  1443  0.0
Contig-U06619-1 (Contig-U06619-1Q) /CSM_Contig/Conti...    40  0.005
Contig-U01427-1 (Contig-U01427-1Q) /CSM_Contig/Conti...    40  0.005
Contig-U13994-1 (Contig-U13994-1Q) /CSM_Contig/Conti...    38  0.018
Contig-U02608-1 (Contig-U02608-1Q) /CSM_Contig/Conti...    38  0.018
Contig-U00070-1 (Contig-U00070-1Q) /CSM_Contig/Conti...    38  0.018
Contig-U14475-1 (Contig-U14475-1Q) /CSM_Contig/Conti...    36  0.072
Contig-U14108-1 (Contig-U14108-1Q) /CSM_Contig/Conti...    36  0.072
Contig-U13287-1 (Contig-U13287-1Q) /CSM_Contig/Conti...    36  0.072
Contig-U12834-1 (Contig-U12834-1Q) /CSM_Contig/Conti...    36  0.072

>Contig-U12558-1 (Contig-U12558-1Q) /CSM_Contig/Contig-U12558-1Q.Seq.d
          Length = 1026

 Score = 1443 bits (728), Expect = 0.0
 Identities = 744/752 (98%)
 Strand = Plus / Plus

                                                                        
Query: 275  actgctgatgatgacaataaaccaattggtaaatcagttaaatatataaatgatgaattt 334
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275  actgctgatgatgacaataaaccaattggtaaatcagttaaatatataaatgatgaattt 334

                                                                        
Query: 335  caatcatcatttgaaaatataaatcaattcattcaagagaaaggtttaaattcaataatt 394
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335  caatcatcatttgaaaatataaatcaattcattcaagagaaaggtttaaattcaataatt 394

                                                                        
Query: 395  catccagattcattattacaactttttaaacatcgttcattcattttaatcaaatcaatt 454
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395  catccagattcattattacaactttttaaacatcgttcattcattttaatcaaatcaatt 454

                                                                        
Query: 455  gctgaatcaattcaagagcaaatgagtaatggaaataaagatataccacaaatttggagt 514
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455  gctgaatcaattcaagagcaaatgagtaatggaaataaagatataccacaaatttggagt 514

                                                                        
Query: 515  gatcttaatgttgaaattaatcattgtagtaaagctcattgtcaattatatgtaattcaa 574
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515  gatcttaatgttgaaattaatcattgtagtaaagctcattgtcaattatatgtaattcaa 574

                                                                        
Query: 575  tcattttatgatcaaattttattattatcttcaaattcttcaagttgttcttcatcgata 634
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575  tcattttatgatcaaattttattattatcttcaaattcttcaagttgttcttcatcgata 634

                                                                        
Query: 635  accactgttttaatacaattacttcaaacttatagtatttggattattaattcaaattta 694
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635  accactgttttaatacaattacttcaaacttatagtatttggattattaattcaaattta 694

                                                                        
Query: 695  gttgatttccttcaagatcaatatgttgaactatctcaaattgatttcttaaaaaagagt 754
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695  gttgatttccttcaagatcaatatgttgaactatctcaaattgatttcttaaaaaagagt 754

                                                                        
Query: 755  ttaatcaatttctataaattattacgtccaaatttagtaccactagttgattcatttgat 814
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755  ttaatcaatttctataaattattacgtccaaatttagtaccactagttgattcatttgat 814

                                                                        
Query: 815  ctctgtaatactactttaggtagtgctttaggttcttataatggtgatgtttattcaact 874
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 815  ctctgtaatactactttaggtagtgctttaggttcttataatggtgatgtttattcaact 874

                                                                        
Query: 875  ctttataaatgggcttcaactcaaccatttaataaaaattctttaccattaggttttaat 934
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 875  ctttataaatgggcttcaactcaaccatttaataaaaattctttaccattaggttttaat 934

                                                                        
Query: 935  gaaactattaaaccattaataaatagtaaactttnnnnnnnntaaaagattatattatca 994
            ||||||||||||||||||||||||||||||||||        ||||||||||||||||||
Sbjct: 935  gaaactattaaaccattaataaatagtaaactttaaaaaaaataaaagattatattatca 994

                                            
Query: 995  ttaattatatttttaaaaaagatttaataaaa 1026
            ||||||||||||||||||||||||||||||||
Sbjct: 995  ttaattatatttttaaaaaagatttaataaaa 1026


 Score =  111 bits (56), Expect = 2e-24
 Identities = 62/62 (100%)
 Strand = Plus / Plus

                                                                       
Query: 90  gaagatttanaatttgaaagaagtcaatcaacattttcagtttcanaattaaattttatt 149
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90  gaagatttanaatttgaaagaagtcaatcaacattttcagtttcanaattaaattttatt 149

             
Query: 150 tt 151
           ||
Sbjct: 150 tt 151


 Score = 89.7 bits (45), Expect = 6e-18
 Identities = 54/54 (100%)
 Strand = Plus / Plus

                                                                 
Query: 202 ttatngataangatgaaattatttcaaaaccncaagaaattcattttttatcaa 255
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 ttatngataangatgaaattatttcaaaaccncaagaaattcattttttatcaa 255


 Score = 81.8 bits (41), Expect = 1e-15
 Identities = 41/41 (100%)
 Strand = Plus / Plus

                                                   
Query: 1  ataagcaactttcaaacatatacaaataaaataataataat 41
          |||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  ataagcaactttcaaacatatacaaataaaataataataat 41


>Contig-U06619-1 (Contig-U06619-1Q) /CSM_Contig/Contig-U06619-1Q.Seq.d
          Length = 427

 Score = 40.1 bits (20), Expect = 0.005
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 22  acaaataaaataataataat 41
           ||||||||||||||||||||
Sbjct: 384 acaaataaaataataataat 403


>Contig-U01427-1 (Contig-U01427-1Q) /CSM_Contig/Contig-U01427-1Q.Seq.d
          Length = 857

 Score = 40.1 bits (20), Expect = 0.005
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                               
Query: 573 aatcattttatgatcaaattttattattatcttcaa 608
           |||||||||  |||||||||||||||| | ||||||
Sbjct: 474 aatcatttttagatcaaattttattatcaccttcaa 509


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 39,897
Number of Sequences: 6905
Number of extensions: 39897
Number of successful extensions: 4913
Number of sequences better than 10.0: 525
length of query: 1026
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1010
effective length of database: 5,564,391
effective search space: 5620034910
effective search space used: 5620034910
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.12. 2
Homology vs DNA 
Query= Contig-U12558-1 (Contig-U12558-1Q) /CSM_Contig/Contig-U12558-1Q.Seq.d
         (1026 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ446032) Dictyostelium discoideum cDNA clone:ddv61n08, 3' ...  1344   0.0    1
(BJ437720) Dictyostelium discoideum cDNA clone:ddv35l05, 3' ...  1306   0.0    2
(BJ427145) Dictyostelium discoideum cDNA clone:ddv61n08, 5' ...    84   4e-25  3
(AF063866) Melanoplus sanguinipes entomopoxvirus, complete g...    42   4e-04  12
(AC116982) Dictyostelium discoideum chromosome 2 map 3622643...    30   0.004  14
(AC128880) Rattus norvegicus clone CH230-31N18, *** SEQUENCI...    54   0.011  1
(CU469464) Candidatus Phytoplasma mali strain AT complete ch...    34   0.021  18
(AC022671) Homo sapiens chromosome 1 clone RP11-113M8 map 1,...    42   0.033  7
(CZ089673) OM__Ba0092I07.f OM__Ba Oryza minuta genomic clone...    52   0.042  1
(CL693425) PRI0161c_D04_2 - PRI0161c.BR (775) Mixed stage fo...    34   0.079  3
(AC116960) Dictyostelium discoideum chromosome 2 map complem...    36   0.13   10
(AC198093) Pongo abelii BAC clone CH276-31L11 from chromosom...    50   0.17   1
(AC189401) Brassica rapa subsp. pekinensis clone KBrB057E05,...    50   0.17   1
(EE421173) 59ACAB6_UP_019_C08_23JUL2004_060 Brassica napus 5...    50   0.17   1
(CT573250) Zebrafish DNA sequence from clone DKEY-229F21 in ...    46   0.37   5
(CU790601) A BAC library has been constructed from PN40024 g...    34   0.38   3
(AE014832) Plasmodium falciparum 3D7 chromosome 10 section 4...    34   0.43   10
(CR853298) Zebrafish DNA sequence from clone CH211-277B24 in...    46   0.60   6
(CR956411) Pig DNA sequence from clone CH242-282N1 on chromo...    48   0.66   1
(AC111998) Rattus norvegicus clone CH230-54H8, WORKING DRAFT...    48   0.66   1
(AC224993) Bos taurus clone CH240-470A18, WORKING DRAFT SEQU...    48   0.66   1
(AC219766) Bos taurus clone CH240-323K17, WORKING DRAFT SEQU...    48   0.66   1
(EE211834) b2l02z2.r1 Danio rerio 12am (night) eye/brain cDN...    48   0.66   1
(CP000107) Ehrlichia canis str. Jake, complete genome.             48   0.66   1
(CT563216) A BAC library has been constructed from cultivar ...    40   0.69   2
(AC114261) Dictyostelium discoideum chromosome 2 map 126059-...    36   0.70   4
(EI358594) GM_WBc0110P09.f GM_WBc Glycine max genomic clone ...    34   1.0    3
(AM429821) Vitis vinifera contig VV78X024100.1, whole genome...    40   1.1    2
(AC189549) Brassica rapa subsp. pekinensis clone KBrH005C21,...    32   1.4    2
(AC172868) Brassica rapa subsp. pekinensis clone KBrH003F06,...    32   1.4    2
(AC189343) Brassica rapa subsp. pekinensis clone KBrB042G14,...    32   1.4    2
(AC225519) Medicago truncatula clone mth2-59d22, WORKING DRA...    38   1.4    4
(AR377700) Sequence 2706 from patent US 6605709.                   40   1.5    2
(CT956033) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    46   1.5    7
(CP000551) Prochlorococcus marinus str. AS9601, complete gen...    32   1.8    17
(BZ066897) lkh82d04.b1 B.oleracea002 Brassica oleracea genom...    32   1.8    2
(BH466987) BOGEK35TR BOGE Brassica oleracea genomic clone BO...    32   1.8    2
(DU107639) JBnY036P07F Brassica napus BAC library JBnY Brass...    32   1.8    2
(BH467231) BOGGG35TF BOGG Brassica oleracea genomic clone BO...    32   1.8    2
(AC180006) Strongylocentrotus purpuratus clone R3-16N21, WOR...    34   1.9    9
(EH664298) 8H01 Transformed tobacco Lambda Zap II library Ni...    42   2.2    2
(CP000721) Clostridium beijerinckii NCIMB 8052, complete gen...    34   2.3    19
(AC225919) Oryza officinalis clone OO__Ba0028C11, *** SEQUEN...    46   2.4    6
(AE017263) Mesoplasma florum L1 complete genome.                   36   2.4    15
(EK578404) 1095521377830 Global-Ocean-Sampling_GS-32-01-01-1...    38   2.5    2
(CR456625) Zebrafish DNA sequence from clone DKEY-76G24 in l...    46   2.6    1
(CR388417) Zebrafish DNA sequence from clone DKEY-211M6 in l...    46   2.6    1
(AC231872) Oryza minuta clone OM__Ba0236H06, complete sequence.    46   2.6    1
(AX415144) Sequence 2135 from Patent WO0228891.                    46   2.6    1
(AX415066) Sequence 2057 from Patent WO0228891.                    46   2.6    1
(AX413613) Sequence 604 from Patent WO0228891.                     46   2.6    1
(AX413020) Sequence 11 from Patent WO0228891.                      46   2.6    1
(AC159952) Dasypus novemcinctus clone VMRC5-231G3, WORKING D...    46   2.6    1
(AC148574) Dasypus novemcinctus clone VMRC5-180G9, WORKING D...    46   2.6    1
(AC114846) Rattus norvegicus clone CH230-124M23, WORKING DRA...    46   2.6    1
(AC098364) Rattus norvegicus clone CH230-1B7, *** SEQUENCING...    46   2.6    1
(CT573368) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    46   2.6    1
(FH903171) CHO_ONF012xj14f1.ab1 CHO_ONF Nicotiana tabacum ge...    46   2.6    1
(FH198910) CHO_OF3065xh23r1.ab1 CHO_OF3 Nicotiana tabacum ge...    46   2.6    1
(ET808607) CHO_OF714xi19r1.ab1 CHO_OF Nicotiana tabacum geno...    46   2.6    1
(ER529096) 1093015734602 Global-Ocean-Sampling_GS-35-01-01-1...    46   2.6    1
(BH768983) BMBAC363B09T7_PSU Brugia malayi Genomic Bac Libra...    46   2.6    1
(CT764775) Paramecium tetraurelia 5-PRIME EST from clone LK0...    46   2.6    1
(AL592102) Listeria innocua plasmid pLI100, complete sequence.     46   2.6    1
(EK568607) 1095521057887 Global-Ocean-Sampling_GS-32-01-01-1...    38   2.7    2
(AE014841) Plasmodium falciparum 3D7 chromosome 11 section 6...    42   2.8    10
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470...    34   2.9    14
(AM467558) Vitis vinifera contig VV78X059322.2, whole genome...    40   3.5    2
(BX005070) Zebrafish DNA sequence from clone DKEY-13B19 in l...    44   3.7    5
(AX346861) Sequence 1932 from Patent WO0200928.                    38   3.8    3
(AM457834) Vitis vinifera contig VV78X237124.5, whole genome...    36   4.9    2
(CP000054) Rickettsia felis URRWXCal2 plasmid pRF, complete ...    32   5.0    5
(CU915821) Medicago truncatula chromosome 5 clone mtf1-171c1...    36   5.0    3
(AC116979) Dictyostelium discoideum chromosome 2 map 6445720...    30   6.0    13
(AE017308) Mycoplasma mobile 163K complete genome.                 32   6.2    17
(AM439973) Vitis vinifera contig VV78X166063.6, whole genome...    36   6.6    3
(AF266085) Neopetalia punctata large subunit ribosomal RNA g...    30   6.7    4
(AC178294) Strongylocentrotus purpuratus clone R3-3096B14, W...    44   6.7    3
(AE014825) Plasmodium falciparum 3D7 chromosome 14 section 1...    34   6.9    11
(AC116963) Dictyostelium discoideum chromosome 2 map 4657875...    34   7.0    12
(AE014833) Plasmodium falciparum 3D7 chromosome 10 section 5...    32   7.4    11
(AE014826) Plasmodium falciparum 3D7 chromosome 14 section 1...    34   7.4    10
(X17191) E.gracilis chloroplast RNA polymerase rpoB-rpoC1-rp...    34   7.6    4
(AC074122) Homo sapiens chromosome 17 clone RP11-730E22, WOR...    36   7.9    7
(EK552529) 1095516123673 Global-Ocean-Sampling_GS-32-01-01-1...    36   7.9    2
(FI090442) CHO_OF8219xn17f1.ab1 CHO_OF8 Nicotiana tabacum ge...    38   7.9    2
(BX323062) Zebrafish DNA sequence from clone DKEYP-38H2 in l...    36   8.3    3
(CU302229) S.lycopersicum DNA sequence from clone LE_HBa-128...    38   8.4    5
(FH452314) CHO_OF4720xm07f1.ab1 CHO_OF4 Nicotiana tabacum ge...    38   8.4    2
(FH698858) CHO_OF5145xp17r1.ab1 CHO_OF5 Nicotiana tabacum ge...    38   8.8    2
(AL358072) Human DNA sequence from clone RP11-188D8 on chrom...    42   8.9    6
(FH140502) CHO_OF3700xa21r1.ab1 CHO_OF3 Nicotiana tabacum ge...    36   9.0    2
(FH656359) CHO_OF4072xe03r1.ab1 CHO_OF4 Nicotiana tabacum ge...    38   9.1    2
(AC116956) Dictyostelium discoideum chromosome 2 map 1418423...    30   9.2    12
(EJ520664) 1092955137467 Global-Ocean-Sampling_GS-29-01-01-1...    36   9.3    2
(EV414541) 210734566 NGP Nasonia giraulti cDNA clone 142A13 ...    34   9.6    3

>(BJ446032) Dictyostelium discoideum cDNA clone:ddv61n08, 3' end,
           single read.
          Length = 740

 Score = 1344 bits (678), Expect = 0.0
 Identities = 678/678 (100%)
 Strand = Plus / Minus


Query: 288 acaataaaccaattggtaaatcagttaaatatataaatgatgaatttcaatcatcatttg 347
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 acaataaaccaattggtaaatcagttaaatatataaatgatgaatttcaatcatcatttg 681


Query: 348 aaaatataaatcaattcattcaagagaaaggtttaaattcaataattcatccagattcat 407
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 aaaatataaatcaattcattcaagagaaaggtttaaattcaataattcatccagattcat 621


Query: 408 tattacaactttttaaacatcgttcattcattttaatcaaatcaattgctgaatcaattc 467
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tattacaactttttaaacatcgttcattcattttaatcaaatcaattgctgaatcaattc 561


Query: 468 aagagcaaatgagtaatggaaataaagatataccacaaatttggagtgatcttaatgttg 527
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 aagagcaaatgagtaatggaaataaagatataccacaaatttggagtgatcttaatgttg 501


Query: 528 aaattaatcattgtagtaaagctcattgtcaattatatgtaattcaatcattttatgatc 587
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 aaattaatcattgtagtaaagctcattgtcaattatatgtaattcaatcattttatgatc 441


Query: 588 aaattttattattatcttcaaattcttcaagttgttcttcatcgataaccactgttttaa 647
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 aaattttattattatcttcaaattcttcaagttgttcttcatcgataaccactgttttaa 381


Query: 648 tacaattacttcaaacttatagtatttggattattaattcaaatttagttgatttccttc 707
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tacaattacttcaaacttatagtatttggattattaattcaaatttagttgatttccttc 321


Query: 708 aagatcaatatgttgaactatctcaaattgatttcttaaaaaagagtttaatcaatttct 767
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 aagatcaatatgttgaactatctcaaattgatttcttaaaaaagagtttaatcaatttct 261


Query: 768 ataaattattacgtccaaatttagtaccactagttgattcatttgatctctgtaatacta 827
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 ataaattattacgtccaaatttagtaccactagttgattcatttgatctctgtaatacta 201


Query: 828 ctttaggtagtgctttaggttcttataatggtgatgtttattcaactctttataaatggg 887
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 ctttaggtagtgctttaggttcttataatggtgatgtttattcaactctttataaatggg 141


Query: 888 cttcaactcaaccatttaataaaaattctttaccattaggttttaatgaaactattaaac 947
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140 cttcaactcaaccatttaataaaaattctttaccattaggttttaatgaaactattaaac 81


Query: 948 cattaataaatagtaaac 965
           ||||||||||||||||||
Sbjct: 80  cattaataaatagtaaac 63

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,107,138,433
Number of extensions: 72934591
Number of successful extensions: 6294520
Number of sequences better than 10.0: 97
Length of query: 1026
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1002
Effective length of database: 97,308,875,965
Effective search space: 97503493716930
Effective search space used: 97503493716930
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7. 3
Homology vs Protein 
Query= Contig-U12558-1 (Contig-U12558-1Q) /CSM_Contig/Contig-U12558-1Q.Seq.d
         (1026 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54GQ6) RecName: Full=Peroxisomal acyl-coenzyme A oxidase 1;   ...   418   e-115
(Q8HYL8) RecName: Full=Peroxisomal acyl-coenzyme A oxidase 1;   ...   104   4e-21
(Q9Z1N0) RecName: Full=Peroxisomal acyl-coenzyme A oxidase 1;   ...   104   6e-21
AF463454_1(AF463454|pid:none) Phascolarctos cinereus acyl-CoA ox...   101   4e-20
DQ842227_1(DQ842227|pid:none) Sus scrofa breed Landrace palmitoy...   100   8e-20
AK028876_1(AK028876|pid:none) Mus musculus 10 days neonate skin ...    99   2e-19
AB034914_1(AB034914|pid:none) Mus musculus muspaox mRNA for pero...    99   2e-19
AL607108_23(AL607108|pid:none) Mouse DNA sequence from clone RP2...    99   2e-19
(Q9R0H0) RecName: Full=Peroxisomal acyl-coenzyme A oxidase 1;   ...    99   2e-19
(P07872) RecName: Full=Peroxisomal acyl-coenzyme A oxidase 1;   ...    97   9e-19
BC089698_1(BC089698|pid:none) Xenopus tropicalis MGC108278 prote...    97   1e-18
(Q15067) RecName: Full=Peroxisomal acyl-coenzyme A oxidase 1;   ...    95   3e-18
BC063727_1(BC063727|pid:none) Xenopus laevis hypothetical protei...    95   3e-18
AK170217_1(AK170217|pid:none) Mus musculus NOD-derived CD11c +ve...    95   3e-18
(Q5RC19) RecName: Full=Peroxisomal acyl-coenzyme A oxidase 1;   ...    95   3e-18
I38095(I38095) acyl-CoA oxidase (EC 1.3.3.6), peroxisomal - huma...    95   3e-18
AK291793_1(AK291793|pid:none) Homo sapiens cDNA FLJ75886 complet...    95   3e-18
AK292965_1(AK292965|pid:none) Homo sapiens cDNA FLJ76484 complet...    92   2e-17
U07866_1(U07866|pid:none) Human peroxisomal fatty acyl-coA oxida...    89   2e-16
EF085068_1(EF085068|pid:none) Picea sitchensis clone WS02813_G04...    86   2e-15
BC083524_1(BC083524|pid:none) Danio rerio zgc:92584, mRNA (cDNA ...    86   2e-15
BC097101_1(BC097101|pid:none) Danio rerio zgc:92584, mRNA (cDNA ...    86   2e-15
AF404404_1(AF404404|pid:none) Glycine max acyl-CoA oxidase (ACX1...    85   5e-15
(Q9ZQP2) RecName: Full=Putative peroxisomal acyl-coenzyme A oxid...    84   6e-15
CR848332_1(CR848332|pid:none) Xenopus tropicalis finished cDNA, ...    84   8e-15
BC125765_1(BC125765|pid:none) Xenopus tropicalis hypothetical pr...    84   8e-15
AY817111_1(AY817111|pid:none) Lycopersicon cheesmaniae peroxisom...    82   3e-14
AY817109_1(AY817109|pid:none) Lycopersicon esculentum peroxisoma...    82   3e-14
FJ796069_2(FJ796069|pid:none) Elaeis oleifera Acyl-CoA dehydroge...    82   4e-14
BT064264_1(BT064264|pid:none) Zea mays full-length cDNA clone ZM...    80   1e-13
AK298402_1(AK298402|pid:none) Homo sapiens cDNA FLJ58373 complet...    80   1e-13
(Q99424) RecName: Full=Peroxisomal acyl-coenzyme A oxidase 2;   ...    80   1e-13
AF404403_1(AF404403|pid:none) Glycine max acyl-CoA oxidase (ACX1...    80   1e-13
FJ362381_9(FJ362381|pid:none) Caenorhabditis sp. PS1010 contig J...    80   1e-13
(O65202) RecName: Full=Peroxisomal acyl-coenzyme A oxidase 1;   ...    79   3e-13
AL161544_35(AL161544|pid:none) Arabidopsis thaliana DNA chromoso...    79   3e-13
AC149079_18(AC149079|pid:none) Medicago truncatula clone mth2-75...    78   6e-13
AK144243_1(AK144243|pid:none) Mus musculus kidney CCL-142 RAG cD...    78   6e-13
BC021339_1(BC021339|pid:none) Mus musculus acyl-Coenzyme A oxida...    78   6e-13
Z99710_4(Z99710|pid:none) Caenorhabditis elegans Cosmid F08A8, c...    76   2e-12
T20571(T20571) hypothetical protein F08A8.1 - Caenorhabditis ele...    76   2e-12
Z99710_5(Z99710|pid:none) Caenorhabditis elegans Cosmid F08A8, c...    76   2e-12
T20569(T20569) hypothetical protein F08A8.3 - Caenorhabditis ele...    75   4e-12
BT067440_1(BT067440|pid:none) Zea mays full-length cDNA clone ZM...    73   2e-11
BT033561_1(BT033561|pid:none) Zea mays full-length cDNA clone ZM...    73   2e-11
Z99710_6(Z99710|pid:none) Caenorhabditis elegans Cosmid F08A8, c...    72   3e-11
T20568(T20568)hypothetical protein F08A8.2 - Caenorhabditis eleg...    72   3e-11
(P34355) RecName: Full=Probable peroxisomal acyl-coenzyme A oxid...    71   7e-11
CR382131_1362(CR382131|pid:none) Yarrowia lipolytica strain CLIB...    69   2e-10
(O74934) RecName: Full=Acyl-coenzyme A oxidase 1;          Short...    69   2e-10
CP000581_266(CP000581|pid:none) Ostreococcus lucimarinus CCE9901...    67   1e-09
DQ455595_1(DQ455595|pid:none) Phaseolus vulgaris acyl-CoA oxidas...    62   3e-08
T21329(T21329) hypothetical protein F25C8.1 - Caenorhabditis ele...    62   4e-08
AY060596_1(AY060596|pid:none) Drosophila melanogaster GH01266 fu...    60   2e-07
(Q7KML2) RecName: Full=Probable peroxisomal acyl-coenzyme A oxid...    60   2e-07
AY069799_1(AY069799|pid:none) Drosophila melanogaster SD03592 fu...    59   3e-07
AE013599_3398(AE013599|pid:none) Drosophila melanogaster chromos...    59   3e-07
AJ001302_1(AJ001302|pid:none) Yarrowia lipolytica ACO4 gene.  &C...    54   7e-06
AM920428_1441(AM920428|pid:none) Penicillium chrysogenum Wiscons...    54   9e-06
AM920435_180(AM920435|pid:none) Penicillium chrysogenum Wisconsi...    53   2e-05
AE017347_31(AE017347|pid:none) Cryptococcus neoformans var. neof...    48   5e-04
AY817110_1(AY817110|pid:none) Lycopersicon esculentum peroxisoma...    47   0.001
AP007175_12(AP007175|pid:none) Aspergillus oryzae RIB40 genomic ...    45   0.005
AY766151_1(AY766151|pid:none) Ovibos moschatus acyl-CoA oxidase ...    45   0.005
(Q6BRD5) RecName: Full=Acyl-coenzyme A oxidase;          Short=A...    42   0.026
CR382136_852(CR382136|pid:none) Debaryomyces hansenii chromosome...    42   0.026
AX155023_1(AX155023|pid:none) Sequence 69 from Patent WO0138484.       41   0.059
(Q756A9) RecName: Full=Acyl-coenzyme A oxidase;          Short=A...    40   0.10
CU928181_331(CU928181|pid:none) Zygosaccharomyces rouxii strain ...    40   0.17
FN392319_1331(FN392319|pid:none) Pichia pastoris GS115 chromosom...    39   0.29
(Q9Y7B1) RecName: Full=Acyl-coenzyme A oxidase;          Short=A...    39   0.29
M27515_1(M27515|pid:none) Yeast (S.cerevisiae) acyl-coenzyme A o...    39   0.29
(P08790) RecName: Full=Acyl-coenzyme A oxidase 5;          Short...    39   0.38
OXCKX5(B25123)acyl-CoA oxidase (EC 1.3.3.6) POX5, peroxisomal - ...    39   0.38
FM992690_189(FM992690|pid:none) Candida dubliniensis CD36 chromo...    38   0.50
(P05335) RecName: Full=Acyl-coenzyme A oxidase 4;          Short...    38   0.65
OXCKPM(A29441)acyl-CoA oxidase (EC 1.3.3.6) PXP4, peroxisomal - ...    38   0.65
Y00623_2(Y00623|pid:none) Candida tropicalis mRNA fragment for a...    38   0.65
Y00623_3(Y00623|pid:none) Candida tropicalis mRNA fragment for a...    38   0.65
(P11356) RecName: Full=Acyl-coenzyme A oxidase 2;          Short...    37   1.5
(Q6G9H8) RecName: Full=Putative oligopeptide transport system pe...    36   1.9
CU458896_3560(CU458896|pid:none) Mycobacterium abscessus chromos...    36   1.9
(Q2YXY7) RecName: Full=Putative oligopeptide transport system pe...    36   1.9
AP009608_150(AP009608|pid:none) Mycoplasma fermentans PG18 DNA, ...    36   2.5
CP000505_148(CP000505|pid:none) Thermofilum pendens Hrk 5, compl...    35   4.2
DQ394807_48(DQ394807|pid:none) Lactococcus phage ul36.k1t1, comp...    35   4.2
AP008934_268(AP008934|pid:none) Staphylococcus saprophyticus sub...    35   4.2
DQ394808_48(DQ394808|pid:none) Lactococcus phage ul36.t1, comple...    35   4.2
CP000479_1992(CP000479|pid:none) Mycobacterium avium 104, comple...    35   4.2
(Q6FY63) RecName: Full=Acyl-coenzyme A oxidase;          Short=A...    35   5.5
AP007159_665(AP007159|pid:none) Aspergillus oryzae RIB40 genomic...    35   5.5
FM992693_326(FM992693|pid:none) Candida dubliniensis CD36 chromo...    34   7.2
(Q00468) RecName: Full=Acyl-coenzyme A oxidase 2;          Short...    34   9.4
AE014188_222(AE014188|pid:none) Plasmodium falciparum 3D7 chromo...    34   9.4
DQ366743_2(DQ366743|pid:none) Uncultured Prochlorococcus marinus...    34   9.4

>(Q54GQ6) RecName: Full=Peroxisomal acyl-coenzyme A oxidase 1;
             EC=1.3.3.6;
          Length = 700

 Score =  418 bits (1074), Expect = e-115
 Identities = 209/222 (94%), Positives = 209/222 (94%)
 Frame = +2

Query: 275  TADDDNKPIGKSVKYINDEFQSSFENINQFIQEKGLNSIIHPDSLLQLFKHRSFILIKSI 454
            TADDDNKPIGKSVKYINDEFQSSFENINQFIQEKGLNSIIHPDSLLQLFKHRSFILIKSI
Sbjct: 470  TADDDNKPIGKSVKYINDEFQSSFENINQFIQEKGLNSIIHPDSLLQLFKHRSFILIKSI 529

Query: 455  AESIQEQMSNGNKDIPQIWSDLNVEINHCSKAHCQLYVIQSFYDQIXXXXXXXXXXXXXI 634
            AESIQEQMSNGNKDIPQIWSDLNVEINHCSKAHCQLYVIQSFYDQI             I
Sbjct: 530  AESIQEQMSNGNKDIPQIWSDLNVEINHCSKAHCQLYVIQSFYDQILLLSSNSSSCSSSI 589

Query: 635  TTVLIQLLQTYSIWIINSNLVDFLQDQYVELSQIDFLKKSLINFYKLLRPNLVPLVDSFD 814
            TTVLIQLLQTYSIWIINSNLVDFLQDQYVELSQIDFLKKSLINFYKLLRPNLVPLVDSFD
Sbjct: 590  TTVLIQLLQTYSIWIINSNLVDFLQDQYVELSQIDFLKKSLINFYKLLRPNLVPLVDSFD 649

Query: 815  LCNTTLGSALGSYNGDVYSTLYKWASTQPFNKNSLPLGFNET 940
            LCNTTLGSALGSYNGDVYSTLYKWASTQPFNKNSLPLGFNET
Sbjct: 650  LCNTTLGSALGSYNGDVYSTLYKWASTQPFNKNSLPLGFNET 691

 Score = 81.3 bits (199), Expect = 5e-14
 Identities = 43/68 (63%), Positives = 43/68 (63%)
 Frame = +3

Query: 51  MYCPKAYENEKKXEDLXFERSQSTFSVSXLXXXXXXXXXXXXXXXXXXXXFXDXDEIISK 230
           MYCPKAYENEKK EDL FERSQSTFSVS L                    F D DEIISK
Sbjct: 1   MYCPKAYENEKKNEDLEFERSQSTFSVSELNFILNNNDHNIINIKNEIKKFIDNDEIISK 60

Query: 231 PQEIHFLS 254
           PQEIHFLS
Sbjct: 61  PQEIHFLS 68

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 976,709,158
Number of extensions: 16162032
Number of successful extensions: 33838
Number of sequences better than 10.0: 95
Number of HSP's gapped: 33814
Number of HSP's successfully gapped: 96
Length of query: 342
Length of database: 1,051,180,864
Length adjustment: 129
Effective length of query: 213
Effective length of database: 633,664,753
Effective search space: 134970592389
Effective search space used: 134970592389
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.63  gvh: 0.33  alm: 0.36  top: 0.53  tms: 0.00  mit: 0.20  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 1.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 32.0 %: peroxisomal
	 16.0 %: mitochondrial
	 12.0 %: nuclear
	  4.0 %: cytoskeletal

>> prediction for Contig-U12558-1 is cyt
VS (DIR, S) 0
VH (FL, L) 2
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0