Contig-U16529-1 |
Contig ID |
Contig-U16529-1 |
Contig update |
2004. 6.11 |
Contig sequence |
 |
Gap |
no gap |
Contig length |
820 |
Chromosome number (1..6, M) |
4 |
Chromosome length |
5430582 |
Start point |
3663908 |
End point |
3664659 |
Strand (PLUS/MINUS) |
PLUS |
Number of clones |
121 |
Number of EST |
142 |
Link to clone list |
U16529 |
List of clone(s) |
 est1=VFI140Z,-7,206 est2=AFH656F,1,480 est3=AHM614E,1,730 est4=VHG542E,1,753 est5=SSJ287Z,10,775 est6=AHI636Z,14,683 est7=VHG158E,14,680 est8=VHG402E,14,755 est9=VHK589F,15,595 est10=AFC262F,17,559 est11=AFF577E,17,752 est12=AHI636F,17,709 est13=VFG405E,17,761 est14=VFL239E,17,757 est15=VFM307F,17,609 est16=VFM618F,17,609 est17=VHG454F,17,604 est18=AHH569Z,18,761 est19=AHJ841E,18,744 est20=VFJ167Z,18,753 est21=AHB807Z,19,761 est22=VFF841E,19,759 est23=VFG620Z,19,496 est24=VHC822Z,19,757 est25=AHB807F,20,608 est26=AHE127E,20,761 est27=AHG682E,20,773 est28=AHH209E,20,761 est29=AHH433E,20,761 est30=AHQ209E,20,592 est31=VFB831F,20,603 est32=VFC575E,20,771 est33=VFG620F,20,609 est34=VFH215F,20,606 est35=VFI659F,20,610 est36=VHB484F,20,606 est37=VHC822F,20,698 est38=VHL872E,20,740 est39=VFM307Z,22,411 est40=VFO394Z,22,342 est41=VFH671Z,23,262 est42=VHI760F,24,588 est43=AHN890E,25,730 est44=VFN638F,25,607 est45=AHQ222E,26,761 est46=VFI346F,26,599 est47=VFI659Z,26,386 est48=VHB309F,27,703 est49=VFM280Z,28,673 est50=VHI219F,28,603 est51=VHH812F,34,685 est52=SSD166F,35,630 est53=VFM355F,35,598 est54=AFB502F,36,562 est55=VFJ167F,36,608 est56=VFA822F,37,700 est57=VHB309Z,37,534 est58=VFA822Z,38,383 est59=SSD548F,39,588 est60=VSG876F,40,561 est61=SSA641F,44,710 est62=VSI881E,44,759 est63=VHF821E,47,742 est64=AHH569F,49,518 est65=AHP857E,49,761 est66=SSJ220E,49,787 est67=VHI760Z,57,407 est68=SSK494Z,59,783 est69=SSC332Z,63,781 est70=SSC587Z,70,785 est71=SSK866Z,73,791 est72=SSI186Z,86,797 est73=SSJ253Z,95,797 est74=SSJ652Z,106,788 est75=SSK613Z,106,756 est76=VHI219Z,114,231 est77=VFH364F,122,732 est78=SSF496Z,127,790 est79=SSF771Z,133,793 est80=VFL159Z,137,295 est81=SSE517Z,139,790 est82=SSF409Z,139,776 est83=SSG844Z,139,787 est84=VFM355Z,154,397 est85=SSF108Z,156,782 est86=SSE151Z,159,787 est87=SSE177Z,161,789 est88=SSF568Z,162,787 est89=SSM310Z,162,780 est90=VFJ103F,164,439 est91=SSD288Z,165,788 est92=SSM611Z,165,789 est93=AHP549E,166,571 est94=VFC423Z,167,758 est95=VSC180Z,168,777 est96=VFB831Z,175,359 est97=SSH868Z,177,811 est98=SSK374Z,182,764 est99=SSI642Z,186,790 est100=SSH867Z,193,798 est101=SSB233Z,212,776 est102=SSF480Z,233,812 est103=AHH833Z,252,490 est104=VSB653Z,265,817 est105=VSG727F,272,511 est106=SSA256Z,282,788 est107=AHK306F,289,789 est108=AHK306Z,289,776 est109=FC-IC0626F,289,775 est110=FC-IC0626Z,289,715 est111=FC-IC1406Z,289,781 est112=SLG432Z,306,785 est113=FC-AM15Z,310,814 est114=SSE320Z,329,792 est115=SSI188Z,332,791 est116=SSH252Z,334,794 est117=SSB732Z,344,817 est118=VFC169Z,348,741 est119=VSJ503E,365,760 est120=SSB572Z,371,780 est121=VFJ621F,385,784 est122=AFL163Z,418,576 est123=SSB106Z,423,779 est124=FC-AF12E,428,741 est125=SSH771Z,429,780 est126=VFH364Z,432,727 est127=VFJ253Z,450,740 est128=VFJ253F,452,784 est129=VSJ679F,502,784 est130=VSE809E,503,775 est131=VSJ679Z,503,760 est132=SSL404Z,533,790 est133=VSB870E,533,820 est134=VSD246F,533,779 est135=VSD246Z,533,755 est136=AHN352F,604,786 est137=AHN352Z,604,761 est138=VSH889F,606,784 est139=VSH889Z,606,768 est140=VSE472E,624,776 est141=VSJ370F,633,784 est142=VSJ370Z,633,760
|
Translated Amino Acid sequence |
 |
Translated Amino Acid sequence (All Frames) |
 |
own update |
2004. 6.23 |
Homology vs CSM-cDNA |
 |
dna update |
2009. 4.12 |
Homology vs DNA |
 Query= Contig-U16529-1 (Contig-U16529-1Q) /CSM_Contig/Contig-U16529-1Q.Seq.d (820 letters)
Database: ddbj_A 102,105,510 sequences; 101,790,757,118 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(C94392) Dictyostelium discoideum slug cDNA, clone SSK613. 1203 0.0 1 (C91961) Dictyostelium discoideum slug cDNA, clone SSC587. 1203 0.0 2 (C91121) Dictyostelium discoideum slug cDNA, clone SSJ652. 1203 0.0 2 (BJ432722) Dictyostelium discoideum cDNA clone:ddv19e17, 3' ... 1203 0.0 2 (BJ438038) Dictyostelium discoideum cDNA clone:ddv36l06, 3' ... 1197 0.0 2 (BJ351983) Dictyostelium discoideum cDNA clone:dda45b10, 3' ... 1197 0.0 2 (BJ350267) Dictyostelium discoideum cDNA clone:dda39e07, 3' ... 1197 0.0 2 (BJ348734) Dictyostelium discoideum cDNA clone:dda34n02, 3' ... 1197 0.0 2 (C91339) Dictyostelium discoideum slug cDNA, clone SSK494. 1195 0.0 2 (U49650) Dictyostelium discoideum calcium-dependent cell adh... 1185 0.0 1 (BJ352395) Dictyostelium discoideum cDNA clone:dda46i17, 3' ... 1181 0.0 2 (BJ357113) Dictyostelium discoideum cDNA clone:dda62b16, 3' ... 1179 0.0 2 (BJ355229) Dictyostelium discoideum cDNA clone:dda56k04, 3' ... 1179 0.0 1 (BJ334935) Dictyostelium discoideum cDNA clone:dda48g10, 5' ... 1179 0.0 1 (AU076357) Dictyostelium discoideum slug cDNA, clone SSA641. 1176 0.0 1 (BJ418510) Dictyostelium discoideum cDNA clone:ddv33b03, 5' ... 1176 0.0 1 (BJ413480) Dictyostelium discoideum cDNA clone:ddv15p15, 5' ... 1176 0.0 1 (BJ430308) Dictyostelium discoideum cDNA clone:ddv6e19, 3' e... 1170 0.0 3 (BJ443951) Dictyostelium discoideum cDNA clone:ddv54p18, 3' ... 1166 0.0 2 (BJ419454) Dictyostelium discoideum cDNA clone:ddv36l06, 5' ... 1166 0.0 1 (BJ410868) Dictyostelium discoideum cDNA clone:ddv2l06, 5' e... 1166 0.0 1 (BJ357314) Dictyostelium discoideum cDNA clone:dda63k06, 3' ... 1166 0.0 3 (C93031) Dictyostelium discoideum slug cDNA, clone SSF496. 1164 0.0 2 (C92927) Dictyostelium discoideum slug cDNA, clone SSF771. 1162 0.0 2 (C90176) Dictyostelium discoideum slug cDNA, clone SSI186. 1160 0.0 3 (BJ433944) Dictyostelium discoideum cDNA clone:ddv23m10, 3' ... 1158 0.0 3 (BJ351905) Dictyostelium discoideum cDNA clone:dda45a04, 3' ... 1158 0.0 3 (C92980) Dictyostelium discoideum slug cDNA, clone SSF409. 1150 0.0 2 (C92519) Dictyostelium discoideum slug cDNA, clone SSE517. 1150 0.0 2 (C89786) Dictyostelium discoideum slug cDNA, clone SSG844. 1150 0.0 2 (BJ353460) Dictyostelium discoideum cDNA clone:dda50b12, 3' ... 1146 0.0 3 (BJ338816) Dictyostelium discoideum cDNA clone:dda63k06, 5' ... 1144 0.0 1 (BJ422494) Dictyostelium discoideum cDNA clone:ddv46h04, 5' ... 1142 0.0 1 (BJ428514) Dictyostelium discoideum cDNA clone:ddv12b12, 3' ... 1136 0.0 3 (C94348) Dictyostelium discoideum slug cDNA, clone SSK866. 1124 0.0 3 (C92931) Dictyostelium discoideum slug cDNA, clone SSF108. 1118 0.0 2 (BJ352911) Dictyostelium discoideum cDNA clone:dda48g10, 3' ... 1118 0.0 1 (AU039039) Dictyostelium discoideum slug cDNA, clone SSM310. 1108 0.0 2 (C93312) Dictyostelium discoideum slug cDNA, clone SSM611. 1102 0.0 2 (C92247) Dictyostelium discoideum slug cDNA, clone SSD288. 1102 0.0 2 (C92640) Dictyostelium discoideum slug cDNA, clone SSF568. 1100 0.0 2 (C90843) Dictyostelium discoideum slug cDNA, clone SSJ220. 1094 0.0 3 (BJ421688) Dictyostelium discoideum cDNA clone:ddv43c15, 5' ... 1092 0.0 1 (BJ332486) Dictyostelium discoideum cDNA clone:dda39e07, 5' ... 1090 0.0 1 (BJ439939) Dictyostelium discoideum cDNA clone:ddv42j06, 3' ... 1088 0.0 2 (AU262383) Dictyostelium discoideum vegetative cDNA clone:VS... 1084 0.0 2 (BJ440628) Dictyostelium discoideum cDNA clone:ddv44c11, 3' ... 1080 0.0 2 (AU038560) Dictyostelium discoideum slug cDNA, clone SSH868. 1078 0.0 2 (AU269384) Dictyostelium discoideum vegetative cDNA clone:VS... 1072 0.0 3 (BJ440221) Dictyostelium discoideum cDNA clone:ddv43d02, 3' ... 1072 0.0 2 (BJ431174) Dictyostelium discoideum cDNA clone:ddv13j02, 3' ... 1072 0.0 2 (C91513) Dictyostelium discoideum slug cDNA, clone SSK374. 1068 0.0 2 (C90504) Dictyostelium discoideum slug cDNA, clone SSI642. 1061 0.0 2 (U20997) Dictyostelium discoideum putative 25 kDa protein mR... 1055 0.0 3 (AU038559) Dictyostelium discoideum slug cDNA, clone SSH867. 1047 0.0 2 (C90902) Dictyostelium discoideum slug cDNA, clone SSJ287. 874 0.0 6 (C90872) Dictyostelium discoideum slug cDNA, clone SSJ253. 714 0.0 3 (AU051891) Dictyostelium discoideum slug cDNA, clone SSC332. 660 0.0 3 (AF340153) Dictyostelium discoideum calcium-dependent cell a... 628 0.0 4 (BJ429875) Dictyostelium discoideum cDNA clone:ddv5n06, 3' e... 1082 0.0 2 (BJ435063) Dictyostelium discoideum cDNA clone:ddv25o20, 3' ... 1043 0.0 2 (AU037665) Dictyostelium discoideum slug cDNA, clone SSE151. 930 0.0 4 (AU037055) Dictyostelium discoideum slug cDNA, clone SSB233. 1009 0.0 2 (AU037690) Dictyostelium discoideum slug cDNA, clone SSE177. 815 0.0 5 (BJ340382) Dictyostelium discoideum cDNA clone:dda12i19, 3' ... 1025 0.0 2 (BJ410365) Dictyostelium discoideum cDNA clone:ddv12b12, 5' ... 1051 0.0 1 (BJ351836) Dictyostelium discoideum cDNA clone:dda44c22, 3' ... 1001 0.0 2 (BJ421921) Dictyostelium discoideum cDNA clone:ddv44c11, 5' ... 1035 0.0 2 (BJ334133) Dictyostelium discoideum cDNA clone:dda45b10, 5' ... 1037 0.0 1 (BJ337070) Dictyostelium discoideum cDNA clone:dda56k04, 5' ... 1029 0.0 2 (C93018) Dictyostelium discoideum slug cDNA, clone SSF480. 936 0.0 2 (BJ421735) Dictyostelium discoideum cDNA clone:ddv43l14, 5' ... 989 0.0 1 (BJ422791) Dictyostelium discoideum cDNA clone:ddv47e06, 5' ... 987 0.0 1 (BJ339633) Dictyostelium discoideum cDNA clone:dda58d24, 5' ... 987 0.0 1 (BJ416170) Dictyostelium discoideum cDNA clone:ddv25n01, 5' ... 985 0.0 1 (BJ413070) Dictyostelium discoideum cDNA clone:ddv14g06, 5' ... 985 0.0 1 (BJ334000) Dictyostelium discoideum cDNA clone:dda44c22, 5' ... 985 0.0 1 (BJ331175) Dictyostelium discoideum cDNA clone:dda34n02, 5' ... 985 0.0 1 (BJ421542) Dictyostelium discoideum cDNA clone:ddv43d02, 5' ... 983 0.0 1 (BJ418744) Dictyostelium discoideum cDNA clone:ddv33h22, 5' ... 983 0.0 1 (BJ414546) Dictyostelium discoideum cDNA clone:ddv19e17, 5' ... 983 0.0 1 (BJ335447) Dictyostelium discoideum cDNA clone:dda50b12, 5' ... 983 0.0 1 (BJ417670) Dictyostelium discoideum cDNA clone:ddv28k10, 5' ... 981 0.0 1 (BJ413346) Dictyostelium discoideum cDNA clone:ddv15m04, 5' ... 979 0.0 1 (BJ415701) Dictyostelium discoideum cDNA clone:ddv23m10, 5' ... 977 0.0 1 (BJ425128) Dictyostelium discoideum cDNA clone:ddv54p18, 5' ... 973 0.0 1 (BJ411437) Dictyostelium discoideum cDNA clone:ddv4n08, 5' e... 973 0.0 1 (BJ334062) Dictyostelium discoideum cDNA clone:dda45a04, 5' ... 973 0.0 1 (BJ414254) Dictyostelium discoideum cDNA clone:ddv18e16, 5' ... 916 0.0 2 (BJ416627) Dictyostelium discoideum cDNA clone:ddv26c06, 5' ... 916 0.0 2 (AU262161) Dictyostelium discoideum vegetative cDNA clone:VS... 898 0.0 2 (BJ424524) Dictyostelium discoideum cDNA clone:ddv52a23, 5' ... 963 0.0 1 (BJ416295) Dictyostelium discoideum cDNA clone:ddv25n13, 5' ... 963 0.0 1 (BJ323910) Dictyostelium discoideum cDNA clone:dda12i19, 5' ... 961 0.0 1 (BJ413922) Dictyostelium discoideum cDNA clone:ddv17l11, 5' ... 957 0.0 1 (BJ423256) Dictyostelium discoideum cDNA clone:ddv48h15, 5' ... 950 0.0 1 (AU051804) Dictyostelium discoideum slug cDNA, clone SSA256. 870 0.0 2 (BJ412052) Dictyostelium discoideum cDNA clone:ddv6e19, 5' e... 930 0.0 1 (BJ412856) Dictyostelium discoideum cDNA clone:ddv13j02, 5' ... 926 0.0 1 (BJ357267) Dictyostelium discoideum cDNA clone:dda63a04, 3' ... 902 0.0 2 (AU272473) Dictyostelium discoideum gamete cDNA clone:FC-IC1... 844 0.0 2 (BJ323941) Dictyostelium discoideum cDNA clone:dda4c01, 5' e... 896 0.0 1 (AU266890) Dictyostelium discoideum vegetative cDNA clone:VS... 892 0.0 1 (AU039790) Dictyostelium discoideum slug cDNA, clone SLG432. 823 0.0 2 (BJ324292) Dictyostelium discoideum cDNA clone:dda5k16, 5' e... 890 0.0 1 (BJ355962) Dictyostelium discoideum cDNA clone:dda58d24, 3' ... 844 0.0 2 (AU271741) Dictyostelium discoideum gamete cDNA clone:FC-IC0... 751 0.0 3 (AU284334) Dictyostelium discoideum gamete cDNA clone:FC-AM1... 773 0.0 3 (AU037807) Dictyostelium discoideum slug cDNA, clone SSE320. 743 0.0 3 (AU038084) Dictyostelium discoideum slug cDNA, clone SSH252. 749 0.0 2 (C90177) Dictyostelium discoideum slug cDNA, clone SSI188. 747 0.0 2 (BJ349814) Dictyostelium discoideum cDNA clone:dda37a21, 3' ... 771 0.0 2 (BJ338770) Dictyostelium discoideum cDNA clone:dda63a04, 5' ... 801 0.0 1 (BJ437037) Dictyostelium discoideum cDNA clone:ddv33b03, 3' ... 779 0.0 1 (BJ334489) Dictyostelium discoideum cDNA clone:dda46i17, 5' ... 771 0.0 1 (AU037298) Dictyostelium discoideum slug cDNA, clone SSB732. 698 0.0 2 (BJ335672) Dictyostelium discoideum cDNA clone:dda51l01, 5' ... 694 0.0 2 (AU037177) Dictyostelium discoideum slug cDNA, clone SSB572. 676 0.0 2 (BJ326497) Dictyostelium discoideum cDNA clone:dda16o14, 5' ... 737 0.0 2 (BJ357108) Dictyostelium discoideum cDNA clone:dda62a13, 3' ... 684 0.0 2 (BJ431408) Dictyostelium discoideum cDNA clone:ddv14g06, 3' ... 718 0.0 1 (BJ353699) Dictyostelium discoideum cDNA clone:dda51l01, 3' ... 656 0.0 3 (AU270020) Dictyostelium discoideum vegetative cDNA clone:VS... 642 0.0 2 (BJ429972) Dictyostelium discoideum cDNA clone:ddv5i17, 3' e... 624 0.0 2 (AU269383) Dictyostelium discoideum vegetative cDNA clone:VS... 678 0.0 1 (BJ414687) Dictyostelium discoideum cDNA clone:ddv20i06, 5' ... 478 0.0 3 (AU038480) Dictyostelium discoideum slug cDNA, clone SSH771. 581 0.0 2 (AU270019) Dictyostelium discoideum vegetative cDNA clone:VS... 642 e-180 1 (AU051988) Dictyostelium discoideum slug cDNA, clone SSB106. 480 e-168 3 (BJ434855) Dictyostelium discoideum cDNA clone:ddv25n01, 3' ... 595 e-165 1 (BJ338663) Dictyostelium discoideum cDNA clone:dda62b16, 5' ... 559 e-163 2 (BJ414558) Dictyostelium discoideum cDNA clone:ddv19i14, 5' ... 478 e-160 3 (AU284265) Dictyostelium discoideum gamete cDNA clone:FC-AF1... 571 e-158 1 (BJ431826) Dictyostelium discoideum cDNA clone:ddv15p15, 3' ... 557 e-154 1 (BJ432734) Dictyostelium discoideum cDNA clone:ddv19i14, 3' ... 529 e-146 1 (BJ429038) Dictyostelium discoideum cDNA clone:ddv2l06, 3' e... 509 e-140 1 (BJ414399) Dictyostelium discoideum cDNA clone:ddv19e01, 5' ... 507 e-139 1 (BJ432388) Dictyostelium discoideum cDNA clone:ddv18e16, 3' ... 462 e-138 2 (AU263394) Dictyostelium discoideum vegetative cDNA clone:VS... 428 e-136 2 (AU271742) Dictyostelium discoideum gamete cDNA clone:FC-IC0... 293 e-134 5 (AU270306) Dictyostelium discoideum vegetative cDNA clone:VS... 420 e-134 2 (BJ440383) Dictyostelium discoideum cDNA clone:ddv43c15, 3' ... 480 e-131 1 (AU270307) Dictyostelium discoideum vegetative cDNA clone:VS... 428 e-128 2 (BJ434984) Dictyostelium discoideum cDNA clone:ddv25n13, 3' ... 466 e-127 1 (BJ436088) Dictyostelium discoideum cDNA clone:ddv29l23, 3' ... 460 e-125 1 (BJ442021) Dictyostelium discoideum cDNA clone:ddv48h15, 3' ... 281 e-122 2 (AU038726) Dictyostelium discoideum slug cDNA, clone SSL404. 381 e-122 2 (AU263710) Dictyostelium discoideum vegetative cDNA clone:VS... 369 e-117 2 (AU262306) Dictyostelium discoideum vegetative cDNA clone:VS... 355 e-113 2 (BJ421299) Dictyostelium discoideum cDNA clone:ddv42j06, 5' ... 381 e-101 1 (BJ352287) Dictyostelium discoideum cDNA clone:dda46b10, 3' ... 373 7e-99 1 (AU263711) Dictyostelium discoideum vegetative cDNA clone:VS... 335 1e-97 3 (AU072161) Dictyostelium discoideum slug cDNA, clone SSD548. 339 1e-88 1 (AU072003) Dictyostelium discoideum slug cDNA, clone SSD166. 331 2e-86 1 (BJ338656) Dictyostelium discoideum cDNA clone:dda62a13, 5' ... 325 2e-84 1 (AU266758) Dictyostelium discoideum vegetative cDNA clone:VS... 321 2e-83 1 (BJ337476) Dictyostelium discoideum cDNA clone:dda57h13, 5' ... 228 1e-76 2 (AU268133) Dictyostelium discoideum vegetative cDNA clone:VS... 226 5e-76 2 (BJ434370) Dictyostelium discoideum cDNA clone:ddv16m18, 3' ... 240 2e-72 2 (AU268134) Dictyostelium discoideum vegetative cDNA clone:VS... 226 1e-67 2 (BJ355590) Dictyostelium discoideum cDNA clone:dda57h13, 3' ... 222 7e-66 2 (BJ429655) Dictyostelium discoideum cDNA clone:ddv4n08, 3' e... 246 3e-65 2 (AU263133) Dictyostelium discoideum vegetative cDNA clone:VS... 190 3e-65 2 (BJ433983) Dictyostelium discoideum cDNA clone:ddv23e15, 3' ... 254 5e-63 1 (AU269821) Dictyostelium discoideum vegetative cDNA clone:VS... 172 6e-60 2 (AU269822) Dictyostelium discoideum vegetative cDNA clone:VS... 172 1e-51 2 (BJ345430) Dictyostelium discoideum cDNA clone:dda23m15, 3' ... 127 4e-51 2 (BJ432048) Dictyostelium discoideum cDNA clone:ddv17o09, 3' ... 192 1e-44 1 (BJ441548) Dictyostelium discoideum cDNA clone:ddv47e06, 3' ... 163 1e-41 2 (AU266882) Dictyostelium discoideum vegetative cDNA clone:VS... 103 1e-17 1 (CU525807) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 52 0.034 1 (AC226657) Sus scrofa clone RP44-337L8, WORKING DRAFT SEQUEN... 52 0.034 1 (CT030005) Zebrafish DNA sequence from clone DKEY-206D17 in ... 34 0.30 2 (AC182490) Pan troglodytes BAC clone CH251-430P12 from chrom... 48 0.54 1 (AC120782) Pan troglodytes clone rp43-45g12, complete sequence. 48 0.54 1 (AC120781) Pan troglodytes clone rp43-28m17, complete sequence. 48 0.54 1 (AC145214) Homo sapiens fosmid clone XXFOS-82587F5 from 2, c... 48 0.54 1 (AC073869) Homo sapiens BAC clone RP11-109E12 from 2, comple... 48 0.54 1 (AC120839) Pan troglodytes clone rp43-5n22, WORKING DRAFT SE... 48 0.54 1 (AC022629) Homo sapiens clone RP11-24O13, WORKING DRAFT SEQU... 48 0.54 1 (ET984412) CHO_OF224xc03r1.ab1 CHO_OF Nicotiana tabacum geno... 48 0.54 1 (FL781784) CCGF11406.g1 CCGF Panicum virgatum early floral b... 48 0.54 1 (AC116551) Dictyostelium discoideum chromosome 2 map complem... 40 0.82 7 (CR405705) Zebrafish DNA sequence from clone DKEY-64E13 in l... 36 1.1 2 (AL672088) Zebrafish DNA sequence from clone BUSM1-153O2 Con... 36 1.2 2 (CJ454689) Macaca fascicularis mRNA, clone: QflA-20440, 5' e... 32 2.0 3 (AC153657) Mus musculus BAC clone RP23-324B3 from chromosome... 46 2.1 1 (AC124492) Mus musculus BAC clone RP23-454I23 from chromosom... 46 2.1 1 (AL161574) Arabidopsis thaliana DNA chromosome 4, contig fra... 46 2.1 1 (AC093258) Homo sapiens chromosome 5 clone RP11-1E3, complet... 46 2.1 1 (AC126869) Rattus norvegicus clone CH230-105N22, *** SEQUENC... 46 2.1 1 (AL096692) Arabidopsis thaliana DNA *** SEQUENCING IN PROGRE... 46 2.1 1 (AC023526) Homo sapiens clone RP11-587F19, WORKING DRAFT SEQ... 46 2.1 1 (BZ357365) SALK_130634.51.25.x Arabidopsis thaliana TDNA ins... 46 2.1 1 (AG120353) Pan troglodytes DNA, clone: PTB-129B05.F. 46 2.1 1 (CX021628) EST939947 Field isolate cDNA library Plasmodium v... 46 2.1 1 (CV646527) EST925280 Field isolate cDNA library Plasmodium v... 46 2.1 1 (CV643742) EST922495 Field isolate cDNA library Plasmodium v... 46 2.1 1 (CU457484) Zebrafish DNA sequence from clone CH73-51A11 in l... 44 2.7 2 (EY877371) CL06-C4-501-063-D09-CT.F Rangpur lime root, plant... 34 2.8 3 (BJ392248) Dictyostelium discoideum cDNA clone:dds26o22, 5' ... 30 4.1 3 (FP090891) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 40 4.1 2 (AC111966) Rattus norvegicus clone CH230-185O4, *** SEQUENCI... 42 5.0 3 (CJ459637) Macaca fascicularis mRNA, clone: QmoA-11889, 5' e... 36 5.3 2 (GH538819) CCUH4889.b1 CCUH Peromyscus maniculatus bairdii B... 32 5.4 2 (DB601611) Halocynthia roretzi cDNA clone:ma330n19, 3' end. 34 5.4 2 (EK176154) 1095458098312 Global-Ocean-Sampling_GS-31-01-01-1... 40 6.0 2 (AL772312) Mouse DNA sequence from clone RP23-91D16 on chrom... 44 8.4 1 (AY747697) Pisum sativum variety Slow iron reductase (FRO1) ... 44 8.4 1 (AY747696) Pisum sativum variety JI1794 iron reductase (FRO1... 44 8.4 1 (AP009629) Lotus japonicus genomic DNA, chromosome 4, clone:... 44 8.4 1 (AM465878) Vitis vinifera contig VV78X010608.8, whole genome... 44 8.4 1 (AC021393) Homo sapiens chromosome 8, clone RP11-27P7, compl... 44 8.4 1 (AC162770) Takifugu rubripes clone MRC-186J3, WORKING DRAFT ... 44 8.4 1 (AC131192) Rattus norvegicus clone CH230-2O24, *** SEQUENCIN... 44 8.4 1 (AC125729) Rattus norvegicus clone CH230-5I13, *** SEQUENCIN... 44 8.4 1 (AC121041) Rattus norvegicus clone CH230-421A1, *** SEQUENCI... 44 8.4 1 (CU896576) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 44 8.4 1 (AC069520) Homo sapiens chromosome 3 clone RP11-269A14, WORK... 44 8.4 1 (AC230930) Bos taurus clone CH240-495P12, WORKING DRAFT SEQU... 44 8.4 1 (AC229602) Homo sapiens chromosome UNKNOWN clone ABC10-44703... 44 8.4 1 (AC218239) Bos taurus clone CH240-290D1, WORKING DRAFT SEQUE... 44 8.4 1 (AC169299) Bos taurus clone CH240-203F7, WORKING DRAFT SEQUE... 44 8.4 1 (AC164754) Bos taurus clone CH240-155K12, *** SEQUENCING IN ... 44 8.4 1 (EK488090) 1095500041141 Global-Ocean-Sampling_GS-32-01-01-1... 44 8.4 1 (EK486784) 1095500032571 Global-Ocean-Sampling_GS-32-01-01-1... 44 8.4 1 (EK101953) 1092963021686 Global-Ocean-Sampling_GS-31-01-01-1... 44 8.4 1 (EJ999163) 1093025007794 Global-Ocean-Sampling_GS-30-02-01-1... 44 8.4 1 (EI715293) 2B421007H24TR BAC library from breast tumor sampl... 44 8.4 1 (EI160410) DH027O05_F1.ab1 Brachypodium distachyon Bd21 Hind... 44 8.4 1 (AG040271) Pan troglodytes DNA, clone: PTB-017K02.F. 44 8.4 1 (CA612222) wr1.pk0141.e3 wr1 Triticum aestivum cDNA clone wr... 44 8.4 1 (GE024230) 454GmaGlobSeed766878 Soybean Seeds Containing Glo... 44 8.4 1 (BX927303) Zebrafish DNA sequence from clone CH211-67L13 in ... 38 9.3 8 (DJ358586) METHODS AND NUCLEIC ACIDS FOR THE ANALYSIS OF GEN... 36 9.9 2 (DJ358562) METHODS AND NUCLEIC ACIDS FOR THE ANALYSIS OF GEN... 36 9.9 2 (CS114305) Sequence 1063 from Patent WO2005054517. 36 9.9 2 (CS114281) Sequence 1039 from Patent WO2005054517. 36 9.9 2 (AC097613) Rattus norvegicus clone CH230-152C17, *** SEQUENC... 38 10.0 4
>(C94392) Dictyostelium discoideum slug cDNA, clone SSK613. Length = 642
Score = 1203 bits (607), Expect = 0.0 Identities = 607/607 (100%) Strand = Plus / Plus
Query: 108 ctgcactggtgaatcatttgaatacaacaaaggtgaaactgtaagattcaacaatggtga 167 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5 ctgcactggtgaatcatttgaatacaacaaaggtgaaactgtaagattcaacaatggtga 64
Query: 168 taaatggaatgataaattcatgtcatgtttggttggttcaaatgttagatgtaacatttg 227 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 65 taaatggaatgataaattcatgtcatgtttggttggttcaaatgttagatgtaacatttg 124
Query: 228 ggagcataatgaaattgatactccaactccaggaaaattccaagaattggctcaaggcag 287 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 125 ggagcataatgaaattgatactccaactccaggaaaattccaagaattggctcaaggcag 184
Query: 288 tacaaacaatgatttaacctcaataaatggtctttcaaagttccaagtcttaccaggagc 347 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 185 tacaaacaatgatttaacctcaataaatggtctttcaaagttccaagtcttaccaggagc 244
Query: 348 ttttcaatgggcagttgatgttaaaattgtcaacaaagttaattcaactgctggttcata 407 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 245 ttttcaatgggcagttgatgttaaaattgtcaacaaagttaattcaactgctggttcata 304
Query: 408 tgaaatgaccattactccataccaagttgataaggttgcttgcaaagatggtgatgactt 467 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 305 tgaaatgaccattactccataccaagttgataaggttgcttgcaaagatggtgatgactt 364
Query: 468 tgttcaattgccaattccaaaacttactccaccagattctgaaattgttagccatttaac 527 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 365 tgttcaattgccaattccaaaacttactccaccagattctgaaattgttagccatttaac 424
Query: 528 agttcgtcaaacacatacaccatatgactatgttgtaaatggaagtgtttactttaaata 587 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 425 agttcgtcaaacacatacaccatatgactatgttgtaaatggaagtgtttactttaaata 484
Query: 588 ctccccaacaactggccaagttacagttattaaaaaagatgagacattcccaaagaatat 647 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 485 ctccccaacaactggccaagttacagttattaaaaaagatgagacattcccaaagaatat 544
Query: 648 gactgttacacaagatgataatacatctttcatctttaacttaaactctgaaaaataaaa 707 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 545 gactgttacacaagatgataatacatctttcatctttaacttaaactctgaaaaataaaa 604
Query: 708 caatatg 714 ||||||| Sbjct: 605 caatatg 611
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 102105510 Number of Hits to DB: 886,908,708 Number of extensions: 54935051 Number of successful extensions: 4630579 Number of sequences better than 10.0: 241 Length of query: 820 Length of database: 101,790,757,118 Length adjustment: 24 Effective length of query: 796 Effective length of database: 99,340,224,878 Effective search space: 79074819002888 Effective search space used: 79074819002888 X1: 11 (21.8 bits) S2: 22 (44.1 bits)
|
protein update |
2009. 7.28 |
Homology vs Protein |
 |
PSORT |
 |
VS (DIR, S) |
13 |
VH (FL, L) |
13 |
VF (FL, S) |
26 |
AH (FL, L) |
17 |
AF (FL, S) |
5 |
SL (DIR, L) |
1 |
SS (DIR, S) |
40 |
SH (FL, L) |
0 |
SF (FL, S) |
0 |
CH (FL, L) |
0 |
CF (FL, S) |
0 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
4 |
FC-IC (SUB) |
2 |