BP911440
Clone id YMU001_000005_A06
Library
Length 228
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000005_A06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
AGGAGTCTATGGCTTATCGCTATTAGATGTAGTTTCACGTTGGGGATACAACGATGAAAC
ATTATTTGCTCCTTTTCATCTTACTAGTGAGCAATTGGCCGATCCTGAATATCGTATTTC
AACACTCGTAGCAAATGAGCTGGTCAAACATGCCTTAAATCTTACCGGTGAAAGTACACT
GGGTTACCATATTGGCACTCAAATGCGTATATCCATTCACGGATTTAT
■■Homology search results ■■ -
sp_hit_id P72171
Definition sp|P72171|ORUR_PSEAE Ornithine utilization regulator OS=Pseudomonas aeruginosa
Align length 72
Score (bit) 47.8
E-value 2.0e-05
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP911440|Adiantum capillus-veneris mRNA, clone:
YMU001_000005_A06.
(228 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P72171|ORUR_PSEAE Ornithine utilization regulator OS=Pseudomo... 48 2e-05
sp|Q115G5|NU1C_TRIEI NAD(P)H-quinone oxidoreductase subunit 1 OS... 30 3.8
sp|Q7VE30|NU1C_PROMA NAD(P)H-quinone oxidoreductase subunit 1 OS... 29 6.5

>sp|P72171|ORUR_PSEAE Ornithine utilization regulator OS=Pseudomonas
aeruginosa GN=oruR PE=4 SV=1
Length = 339

Score = 47.8 bits (112), Expect = 2e-05
Identities = 26/72 (36%), Positives = 39/72 (54%)
Frame = +2

Query: 8 YGLSLLDVVSRWGYNDETLFAPFHLTSEQLADPEYRISTLVANELVKHALNLTGESTLGY 187
Y +LLD+V+ +G + + LF + E L P R+S L N+L A L GE LG
Sbjct: 16 YAEALLDLVAEYGVSRQALFDAARVRPEVLDSPNGRLSFLDFNQLTYSAQALCGEPALGL 75

Query: 188 HIGTQMRISIHG 223
+G ++ +S HG
Sbjct: 76 VLGQRLNVSAHG 87


>sp|Q115G5|NU1C_TRIEI NAD(P)H-quinone oxidoreductase subunit 1
OS=Trichodesmium erythraeum (strain IMS101) GN=ndhA PE=3
SV=1
Length = 372

Score = 30.0 bits (66), Expect = 3.8
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = +3

Query: 48 TTMKHYLLLFILLVSNWPILNIVFQHS*QMSWSNMP*ILPVK-VHWVTILALKCVYPF 218
T +K YLL+FI ++ W + + + W +LPV V+ + ALK +PF
Sbjct: 314 TLLKTYLLVFIAVLLRWTLPRVRIDQLLDLGWKF---LLPVALVNLLLTAALKLTFPF 368


>sp|Q7VE30|NU1C_PROMA NAD(P)H-quinone oxidoreductase subunit 1
OS=Prochlorococcus marinus GN=ndhA PE=3 SV=2
Length = 372

Score = 29.3 bits (64), Expect = 6.5
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = +3

Query: 48 TTMKHYLLLFILLVSNWPILNIVFQHS*QMSWSNMP*ILPVK-VHWVTILALKCVYPF 218
T K YLL+F+ ++ W + + W +LP+ V+ + ALK V+PF
Sbjct: 314 TVFKTYLLVFLAILLRWTTPRVRIDQLLDLGWKF---LLPISLVNLLFTAALKLVFPF 368


tr_hit_id B2HZ04
Definition tr|B2HZ04|B2HZ04_ACIBC AraC-type DNA-binding domain-containing protein OS=Acinetobacter baumannii (strain ACICU)
Align length 75
Score (bit) 150.0
E-value 4.0e-35
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP911440|Adiantum capillus-veneris mRNA, clone:
YMU001_000005_A06.
(228 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|B2HZ04|B2HZ04_ACIBC AraC-type DNA-binding domain-containing p... 150 4e-35
tr|B0VR12|B0VR12_ACIBS Putative transcriptional regulator (AraC ... 150 4e-35
tr|B0VCZ1|B0VCZ1_ACIBY Putative transcriptional regulator (AraC ... 150 4e-35
tr|A3M4W6|A3M4W6_ACIBT Putative transcriptional regulator (AraC ... 150 4e-35
tr|B7I4Z1|B7I4Z1_ACIBA Transcriptional regulator, AraC family OS... 150 4e-35
tr|B7H3P9|B7H3P9_ACIBA Bacterial regulatory helix-turn-helix pro... 150 4e-35
tr|Q6FB58|Q6FB58_ACIAD Putative transcriptional regulator (AraC ... 139 9e-32
tr|A6F3K9|A6F3K9_9ALTE Transcriptional regulator, AraC family pr... 49 1e-04
tr|A3M7C3|A3M7C3_ACIBT Putative transcriptional regulator (AraC ... 49 2e-04
tr|B4X5N3|B4X5N3_9GAMM Transcriptional regulator, AraC family pr... 48 2e-04
tr|Q02HY9|Q02HY9_PSEAB Transcriptional regulator OruR OS=Pseudom... 48 3e-04
tr|B7UYD0|B7UYD0_PSEAE Transcriptional regulator OruR OS=Pseudom... 48 3e-04
tr|A3LM78|A3LM78_PSEAE Transcriptional regulator OruR OS=Pseudom... 48 3e-04
tr|A3L594|A3L594_PSEAE Transcriptional regulator OruR OS=Pseudom... 48 3e-04
tr|A1TX04|A1TX04_MARAV Transcriptional regulator, AraC family OS... 45 0.001
tr|B2HXY7|B2HXY7_ACIBC AraC-type DNA-binding domain-containing p... 44 0.004
tr|A6VAE9|A6VAE9_PSEA7 Transcriptional regulator OruR OS=Pseudom... 44 0.005
tr|B0VEM3|B0VEM3_ACIBY Putative HTH-type transcriptional regulat... 42 0.015
tr|A3M8D9|A3M8D9_ACIBT Putative transcriptional regulator (AraC ... 42 0.015
tr|B7GXD8|B7GXD8_ACIBA Putative uncharacterized protein OS=Acine... 42 0.015
tr|Q0VSF4|Q0VSF4_ALCBS Transcriptional regulator, AraC family OS... 42 0.020
tr|Q1N621|Q1N621_9GAMM AraC-type DNA-binding domain-containing p... 40 0.076
tr|B4X114|B4X114_9GAMM Transcriptional regulator, AraC family pr... 39 0.13
tr|Q0VTC8|Q0VTC8_ALCBS Transcriptional regulator, AraC family OS... 38 0.22
tr|Q0VN05|Q0VN05_ALCBS Transcriptional regulator, AraC family OS... 38 0.29
tr|Q0VLG4|Q0VLG4_ALCBS Transcriptional regulator, AraC family OS... 37 0.49
tr|Q0VQ50|Q0VQ50_ALCBS Transcriptional regulator, AraC family OS... 37 0.64
tr|B4X0T9|B4X0T9_9GAMM Transcriptional regulator, AraC family pr... 36 0.84
tr|A6F333|A6F333_9ALTE Transcriptional regulator, AraC family pr... 36 0.84
tr|B4WZV6|B4WZV6_9GAMM Transcriptional regulator, AraC family pr... 36 1.1

>tr|B2HZ04|B2HZ04_ACIBC AraC-type DNA-binding domain-containing
protein OS=Acinetobacter baumannii (strain ACICU)
GN=ACICU_01579 PE=4 SV=1
Length = 341

Score = 150 bits (378), Expect = 4e-35
Identities = 73/75 (97%), Positives = 73/75 (97%)
Frame = +2

Query: 2 GVYGLSLLDVVSRWGYNDETLFAPFHLTSEQLADPEYRISTLVANELVKHALNLTGESTL 181
GVYGL LLDVVSRWGYNDETLFAPFHLTSEQLADPEYRIST VANELVKHALNLTGESTL
Sbjct: 14 GVYGLLLLDVVSRWGYNDETLFAPFHLTSEQLADPEYRISTPVANELVKHALNLTGESTL 73

Query: 182 GYHIGTQMRISIHGF 226
GYHIGTQMRISIHGF
Sbjct: 74 GYHIGTQMRISIHGF 88


>tr|B0VR12|B0VR12_ACIBS Putative transcriptional regulator (AraC
family) OS=Acinetobacter baumannii (strain SDF)
GN=ABSDF2103 PE=4 SV=1
Length = 341

Score = 150 bits (378), Expect = 4e-35
Identities = 73/75 (97%), Positives = 73/75 (97%)
Frame = +2

Query: 2 GVYGLSLLDVVSRWGYNDETLFAPFHLTSEQLADPEYRISTLVANELVKHALNLTGESTL 181
GVYGL LLDVVSRWGYNDETLFAPFHLTSEQLADPEYRIST VANELVKHALNLTGESTL
Sbjct: 14 GVYGLLLLDVVSRWGYNDETLFAPFHLTSEQLADPEYRISTPVANELVKHALNLTGESTL 73

Query: 182 GYHIGTQMRISIHGF 226
GYHIGTQMRISIHGF
Sbjct: 74 GYHIGTQMRISIHGF 88


>tr|B0VCZ1|B0VCZ1_ACIBY Putative transcriptional regulator (AraC
family) OS=Acinetobacter baumannii (strain AYE)
GN=ABAYE2102 PE=4 SV=1
Length = 341

Score = 150 bits (378), Expect = 4e-35
Identities = 73/75 (97%), Positives = 73/75 (97%)
Frame = +2

Query: 2 GVYGLSLLDVVSRWGYNDETLFAPFHLTSEQLADPEYRISTLVANELVKHALNLTGESTL 181
GVYGL LLDVVSRWGYNDETLFAPFHLTSEQLADPEYRIST VANELVKHALNLTGESTL
Sbjct: 14 GVYGLLLLDVVSRWGYNDETLFAPFHLTSEQLADPEYRISTPVANELVKHALNLTGESTL 73

Query: 182 GYHIGTQMRISIHGF 226
GYHIGTQMRISIHGF
Sbjct: 74 GYHIGTQMRISIHGF 88


>tr|A3M4W6|A3M4W6_ACIBT Putative transcriptional regulator (AraC
family) OS=Acinetobacter baumannii (strain ATCC 17978 /
NCDC KC 755) GN=A1S_1533 PE=4 SV=2
Length = 341

Score = 150 bits (378), Expect = 4e-35
Identities = 73/75 (97%), Positives = 73/75 (97%)
Frame = +2

Query: 2 GVYGLSLLDVVSRWGYNDETLFAPFHLTSEQLADPEYRISTLVANELVKHALNLTGESTL 181
GVYGL LLDVVSRWGYNDETLFAPFHLTSEQLADPEYRIST VANELVKHALNLTGESTL
Sbjct: 14 GVYGLLLLDVVSRWGYNDETLFAPFHLTSEQLADPEYRISTPVANELVKHALNLTGESTL 73

Query: 182 GYHIGTQMRISIHGF 226
GYHIGTQMRISIHGF
Sbjct: 74 GYHIGTQMRISIHGF 88


>tr|B7I4Z1|B7I4Z1_ACIBA Transcriptional regulator, AraC family
OS=Acinetobacter baumannii AB0057 GN=AB57_1775 PE=4 SV=1
Length = 341

Score = 150 bits (378), Expect = 4e-35
Identities = 73/75 (97%), Positives = 73/75 (97%)
Frame = +2

Query: 2 GVYGLSLLDVVSRWGYNDETLFAPFHLTSEQLADPEYRISTLVANELVKHALNLTGESTL 181
GVYGL LLDVVSRWGYNDETLFAPFHLTSEQLADPEYRIST VANELVKHALNLTGESTL
Sbjct: 14 GVYGLLLLDVVSRWGYNDETLFAPFHLTSEQLADPEYRISTPVANELVKHALNLTGESTL 73

Query: 182 GYHIGTQMRISIHGF 226
GYHIGTQMRISIHGF
Sbjct: 74 GYHIGTQMRISIHGF 88


>tr|B7H3P9|B7H3P9_ACIBA Bacterial regulatory helix-turn-helix
protein, AraC family protein OS=Acinetobacter baumannii
AB307-0294 GN=ABBFA_001944 PE=4 SV=1
Length = 341

Score = 150 bits (378), Expect = 4e-35
Identities = 73/75 (97%), Positives = 73/75 (97%)
Frame = +2

Query: 2 GVYGLSLLDVVSRWGYNDETLFAPFHLTSEQLADPEYRISTLVANELVKHALNLTGESTL 181
GVYGL LLDVVSRWGYNDETLFAPFHLTSEQLADPEYRIST VANELVKHALNLTGESTL
Sbjct: 14 GVYGLLLLDVVSRWGYNDETLFAPFHLTSEQLADPEYRISTPVANELVKHALNLTGESTL 73

Query: 182 GYHIGTQMRISIHGF 226
GYHIGTQMRISIHGF
Sbjct: 74 GYHIGTQMRISIHGF 88


>tr|Q6FB58|Q6FB58_ACIAD Putative transcriptional regulator (AraC
family) OS=Acinetobacter sp. (strain ADP1) GN=ACIAD1875
PE=4 SV=1
Length = 352

Score = 139 bits (349), Expect = 9e-32
Identities = 66/75 (88%), Positives = 69/75 (92%)
Frame = +2

Query: 2 GVYGLSLLDVVSRWGYNDETLFAPFHLTSEQLADPEYRISTLVANELVKHALNLTGESTL 181
GVYGL LLDVVSRWGYNDETLFAPFHL+SEQLADPEYRI +ANELVKHAL LTGESTL
Sbjct: 25 GVYGLLLLDVVSRWGYNDETLFAPFHLSSEQLADPEYRIPIHIANELVKHALKLTGESTL 84

Query: 182 GYHIGTQMRISIHGF 226
GYH+G QMRISIHGF
Sbjct: 85 GYHLGNQMRISIHGF 99


>tr|A6F3K9|A6F3K9_9ALTE Transcriptional regulator, AraC family
protein OS=Marinobacter algicola DG893 GN=MDG893_17447
PE=4 SV=1
Length = 368

Score = 49.3 bits (116), Expect = 1e-04
Identities = 25/74 (33%), Positives = 40/74 (54%)
Frame = +2

Query: 2 GVYGLSLLDVVSRWGYNDETLFAPFHLTSEQLADPEYRISTLVANELVKHALNLTGESTL 181
GVY L DVV + G+ND L+ T + L + R+ A +V+ AL L G+ L
Sbjct: 20 GVYLRVLADVVRQLGHNDRVLYEDMAFTPQDLKSNDSRVFVTDAIVMVERALTLAGKDGL 79

Query: 182 GYHIGTQMRISIHG 223
+ + ++R++IHG
Sbjct: 80 SFTLARELRVTIHG 93


>tr|A3M7C3|A3M7C3_ACIBT Putative transcriptional regulator (AraC
family) OS=Acinetobacter baumannii (strain ATCC 17978 /
NCDC KC 755) GN=A1S_2398 PE=4 SV=2
Length = 339

Score = 48.5 bits (114), Expect = 2e-04
Identities = 25/74 (33%), Positives = 39/74 (52%)
Frame = +2

Query: 2 GVYGLSLLDVVSRWGYNDETLFAPFHLTSEQLADPEYRISTLVANELVKHALNLTGESTL 181
G Y + DVV + + E L ++ EQL +P + + + N L+ A+ LT E L
Sbjct: 7 GTYVSLMADVVQKLNVSPEELLEGSGVSVEQLLEPFWYLDFNIFNNLLNRAVELTNEPAL 66

Query: 182 GYHIGTQMRISIHG 223
G ++G QM +S HG
Sbjct: 67 GIYLGLQMTVSCHG 80


>tr|B4X5N3|B4X5N3_9GAMM Transcriptional regulator, AraC family
protein OS=Alcanivorax sp. DG881 GN=ADG881_1715 PE=4
SV=1
Length = 333

Score = 48.1 bits (113), Expect = 2e-04
Identities = 27/69 (39%), Positives = 37/69 (53%)
Frame = +2

Query: 20 LLDVVSRWGYNDETLFAPFHLTSEQLADPEYRISTLVANELVKHALNLTGESTLGYHIGT 199
LLDV+SR G ETL A + DP+ RI+ + A+ L+GE LG+ +G
Sbjct: 16 LLDVLSRRGVPTETLLADTRIEPGCWRDPQARITAQDFEVVATRAMALSGEPWLGWELGA 75

Query: 200 QMRISIHGF 226
M +S HGF
Sbjct: 76 SMTLSSHGF 84