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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP911442
Clone id YMU001_000005_A08
Library
Length 538
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000005_A08.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GGAAGAAACAGCTTTGATTGCCGTGTGCGAAAACATCAGCACATTTTTCCACTATATATT
GGCTCCATATAACAATCTTGGAGCTTGCAGGTTCATCCCAAAGAATGAATAATAGTACAA
AATTCTGCTTTGCCACAGATCCACTATTACATGATGGAGACAGAAACCCGACCCCCAAAA
GAATTACAACACAGTTGATGAGCTCCTCCTCTTGGTTTAGGAAATAATCAAAAAATTTAA
GTTTATGACTAAGCTCATGACTGGCAAGAGAAGAGCAACATGTGTTGCTCTCAAAAAAAG
CTTTAAGTACTGATTAAAGATACAAGACTACCTATGATTTGATTGTAATGGGAAGTACCG
GCTTTTTTACCTCCCCTCGTGAAGATCTTCTGAAAATACAGCAGACCTTGAAAACACCTC
GTTGTCAAAAGCAAAAACAGAGAAGGGCCCTGAGGAGAAAAGCGAAGATGACCCATCTGA
CTCCAAAGGTGCAGAAGTCTGTTGGTGGGCATTCTGAATGCTGGCAACAAAGGATCTA
■■Homology search results ■■ -
sp_hit_id O35817
Definition sp|O35817|AKA14_RAT A-kinase anchor protein 14 OS=Rattus norvegicus
Align length 36
Score (bit) 34.7
E-value 0.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911442|Adiantum capillus-veneris mRNA, clone:
YMU001_000005_A08.
         (538 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O35817|AKA14_RAT A-kinase anchor protein 14 OS=Rattus norvegi...    35   0.30 
sp|O54943|PER2_MOUSE Period circadian protein homolog 2 OS=Mus m...    32   1.9  
sp|O15055|PER2_HUMAN Period circadian protein homolog 2 OS=Homo ...    31   4.3  
sp|Q9Z301|PER2_RAT Period circadian protein homolog 2 OS=Rattus ...    30   5.7  
sp|Q8NWZ9|TOP1_STAAW DNA topoisomerase 1 OS=Staphylococcus aureu...    30   5.7  
sp|Q06AK7|TOP1_STAAU DNA topoisomerase 1 OS=Staphylococcus aureu...    30   5.7  
sp|Q6G9W3|TOP1_STAAS DNA topoisomerase 1 OS=Staphylococcus aureu...    30   5.7  
sp|Q6GHI5|TOP1_STAAR DNA topoisomerase 1 OS=Staphylococcus aureu...    30   5.7  
sp|Q7A5Y5|TOP1_STAAN DNA topoisomerase 1 OS=Staphylococcus aureu...    30   5.7  
sp|Q99UM1|TOP1_STAAM DNA topoisomerase 1 OS=Staphylococcus aureu...    30   5.7  
sp|Q5HGI2|TOP1_STAAC DNA topoisomerase 1 OS=Staphylococcus aureu...    30   5.7  
sp|Q2YXL8|TOP1_STAAB DNA topoisomerase 1 OS=Staphylococcus aureu...    30   5.7  
sp|Q2FZ32|TOP1_STAA8 DNA topoisomerase 1 OS=Staphylococcus aureu...    30   5.7  
sp|Q2FHI8|TOP1_STAA3 DNA topoisomerase 1 OS=Staphylococcus aureu...    30   5.7  
sp|Q8QGQ8|PER2_CHICK Period circadian protein homolog 2 OS=Gallu...    30   9.7  
sp|P05499|ATP6_TOBAC ATP synthase subunit a OS=Nicotiana tabacum...    30   9.7  

>sp|O35817|AKA14_RAT A-kinase anchor protein 14 OS=Rattus norvegicus
           GN=Akap14 PE=2 SV=1
          Length = 502

 Score = 34.7 bits (78), Expect = 0.30
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = +2

Query: 389 SENTADLENTSLSKAKTEKGPEEKSEDDPSDSKGAE 496
           ++    +ENTS +KAK  + PE K+  +P DSK  E
Sbjct: 9   NQKAKTVENTSTAKAKKPEAPEPKNVTEPKDSKAVE 44


>sp|O54943|PER2_MOUSE Period circadian protein homolog 2 OS=Mus
           musculus GN=Per2 PE=1 SV=3
          Length = 1257

 Score = 32.0 bits (71), Expect = 1.9
 Identities = 14/47 (29%), Positives = 27/47 (57%)
 Frame = +3

Query: 66  HITILELAGSSQRMNNSTKFCFATDPLLHDGDRNPTPKRITTQLMSS 206
           H++ L L G ++ + + T  C  +  ++H GD+ P P+  T + M+S
Sbjct: 647 HLSSLTLPGKAESVVSLTSQCSYSSTIVHVGDKKPQPELETVEDMAS 693


>sp|O15055|PER2_HUMAN Period circadian protein homolog 2 OS=Homo
           sapiens GN=PER2 PE=1 SV=2
          Length = 1255

 Score = 30.8 bits (68), Expect = 4.3
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +3

Query: 66  HITILELAGSSQRMNNSTKFCFATDPLLHDGDRNPTPK 179
           H+T L L G ++ + + T  C  +  ++H GD+ P P+
Sbjct: 650 HLTSLALPGKAESVASLTSQCSYSSTIVHVGDKKPQPE 687


>sp|Q9Z301|PER2_RAT Period circadian protein homolog 2 OS=Rattus
           norvegicus GN=Per2 PE=1 SV=1
          Length = 1257

 Score = 30.4 bits (67), Expect = 5.7
 Identities = 13/47 (27%), Positives = 27/47 (57%)
 Frame = +3

Query: 66  HITILELAGSSQRMNNSTKFCFATDPLLHDGDRNPTPKRITTQLMSS 206
           H++ L L G ++ + + T  C  +  ++H GD+ P P+  T + ++S
Sbjct: 647 HLSSLALPGKAESVVSLTSQCSYSSTIVHVGDKKPQPELETVEDVAS 693


>sp|Q8NWZ9|TOP1_STAAW DNA topoisomerase 1 OS=Staphylococcus aureus
           (strain MW2) GN=topA PE=3 SV=2
          Length = 689

 Score = 30.4 bits (67), Expect = 5.7
 Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 13/63 (20%)
 Frame = -1

Query: 196 NCVVILLGVGFLSPSCNSGSV----AKQNFVLL---------FILWDEPASSKIVIWSQY 56
           N   I+  +G   P CN G V    +K+N V           FI WD+P        +QY
Sbjct: 605 NTKAIVKSIGVKCPKCNDGDVVERKSKKNRVFYGCSKYPECDFISWDKPIGRDCPKCNQY 664

Query: 55  IVE 47
           +VE
Sbjct: 665 LVE 667


>sp|Q06AK7|TOP1_STAAU DNA topoisomerase 1 OS=Staphylococcus aureus
           GN=topA PE=3 SV=1
          Length = 689

 Score = 30.4 bits (67), Expect = 5.7
 Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 13/63 (20%)
 Frame = -1

Query: 196 NCVVILLGVGFLSPSCNSGSV----AKQNFVLL---------FILWDEPASSKIVIWSQY 56
           N   I+  +G   P CN G V    +K+N V           FI WD+P        +QY
Sbjct: 605 NTKAIVKSIGVKCPKCNDGDVVERKSKKNRVFYGCSKYPECDFISWDKPIGRDCPKCNQY 664

Query: 55  IVE 47
           +VE
Sbjct: 665 LVE 667


>sp|Q6G9W3|TOP1_STAAS DNA topoisomerase 1 OS=Staphylococcus aureus
           (strain MSSA476) GN=topA PE=3 SV=1
          Length = 689

 Score = 30.4 bits (67), Expect = 5.7
 Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 13/63 (20%)
 Frame = -1

Query: 196 NCVVILLGVGFLSPSCNSGSV----AKQNFVLL---------FILWDEPASSKIVIWSQY 56
           N   I+  +G   P CN G V    +K+N V           FI WD+P        +QY
Sbjct: 605 NTKAIVKSIGVKCPKCNDGDVVERKSKKNRVFYGCSKYPECDFISWDKPIGRDCPKCNQY 664

Query: 55  IVE 47
           +VE
Sbjct: 665 LVE 667


>sp|Q6GHI5|TOP1_STAAR DNA topoisomerase 1 OS=Staphylococcus aureus
           (strain MRSA252) GN=topA PE=3 SV=1
          Length = 689

 Score = 30.4 bits (67), Expect = 5.7
 Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 13/63 (20%)
 Frame = -1

Query: 196 NCVVILLGVGFLSPSCNSGSV----AKQNFVLL---------FILWDEPASSKIVIWSQY 56
           N   I+  +G   P CN G V    +K+N V           FI WD+P        +QY
Sbjct: 605 NTKAIVKSIGVKCPKCNDGDVVERKSKKNRVFYGCSKYPECDFISWDKPIGRDCPKCNQY 664

Query: 55  IVE 47
           +VE
Sbjct: 665 LVE 667


>sp|Q7A5Y5|TOP1_STAAN DNA topoisomerase 1 OS=Staphylococcus aureus
           (strain N315) GN=topA PE=1 SV=1
          Length = 689

 Score = 30.4 bits (67), Expect = 5.7
 Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 13/63 (20%)
 Frame = -1

Query: 196 NCVVILLGVGFLSPSCNSGSV----AKQNFVLL---------FILWDEPASSKIVIWSQY 56
           N   I+  +G   P CN G V    +K+N V           FI WD+P        +QY
Sbjct: 605 NTKAIVKSIGVKCPKCNDGDVVERKSKKNRVFYGCSKYPECDFISWDKPIGRDCPKCNQY 664

Query: 55  IVE 47
           +VE
Sbjct: 665 LVE 667


>sp|Q99UM1|TOP1_STAAM DNA topoisomerase 1 OS=Staphylococcus aureus
           (strain Mu50 / ATCC 700699) GN=topA PE=3 SV=1
          Length = 689

 Score = 30.4 bits (67), Expect = 5.7
 Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 13/63 (20%)
 Frame = -1

Query: 196 NCVVILLGVGFLSPSCNSGSV----AKQNFVLL---------FILWDEPASSKIVIWSQY 56
           N   I+  +G   P CN G V    +K+N V           FI WD+P        +QY
Sbjct: 605 NTKAIVKSIGVKCPKCNDGDVVERKSKKNRVFYGCSKYPECDFISWDKPIGRDCPKCNQY 664

Query: 55  IVE 47
           +VE
Sbjct: 665 LVE 667
tr_hit_id A7Q0P3
Definition tr|A7Q0P3|A7Q0P3_VITVI Chromosome chr7 scaffold_42, whole genome shotgun sequence OS=Vitis vinifera
Align length 21
Score (bit) 38.5
E-value 0.23
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911442|Adiantum capillus-veneris mRNA, clone:
YMU001_000005_A08.
         (538 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7Q0P3|A7Q0P3_VITVI Chromosome chr7 scaffold_42, whole genome...    39   0.23 
tr|A5BHN7|A5BHN7_VITVI Putative uncharacterized protein OS=Vitis...    39   0.23 
tr|Q19XZ6|Q19XZ6_9CAUD Gp64 OS=Mycobacterium phage Wildcat GN=64...    35   1.9  
tr|Q8L7V7|Q8L7V7_ARATH AT4g02010/T10M13_2 OS=Arabidopsis thalian...    35   2.5  
tr|O04245|O04245_ARATH Putative NAK-like ser/thr protein kinase ...    35   2.5  
tr|B0ERD4|B0ERD4_ENTDI Putative uncharacterized protein OS=Entam...    35   3.3  
tr|B7ZX23|B7ZX23_MAIZE Putative uncharacterized protein OS=Zea m...    33   7.3  

>tr|A7Q0P3|A7Q0P3_VITVI Chromosome chr7 scaffold_42, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00028126001
           PE=4 SV=1
          Length = 638

 Score = 38.5 bits (88), Expect = 0.23
 Identities = 17/21 (80%), Positives = 19/21 (90%)
 Frame = -2

Query: 432 AFDNEVFSRSAVFSEDLHEGR 370
           AFDN+  SR+AVFSEDLHEGR
Sbjct: 618 AFDNDNISRTAVFSEDLHEGR 638


>tr|A5BHN7|A5BHN7_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_041991 PE=4 SV=1
          Length = 707

 Score = 38.5 bits (88), Expect = 0.23
 Identities = 17/21 (80%), Positives = 19/21 (90%)
 Frame = -2

Query: 432 AFDNEVFSRSAVFSEDLHEGR 370
           AFDN+  SR+AVFSEDLHEGR
Sbjct: 687 AFDNDNISRTAVFSEDLHEGR 707


>tr|Q19XZ6|Q19XZ6_9CAUD Gp64 OS=Mycobacterium phage Wildcat GN=64
           PE=4 SV=1
          Length = 211

 Score = 35.4 bits (80), Expect = 1.9
 Identities = 19/31 (61%), Positives = 24/31 (77%)
 Frame = +2

Query: 383 RSSENTADLENTSLSKAKTEKGPEEKSEDDP 475
           RSS+N ADL  T+L+KA+TE GP EKS  +P
Sbjct: 3   RSSDNCADLL-TALAKARTEIGPVEKSAQNP 32


>tr|Q8L7V7|Q8L7V7_ARATH AT4g02010/T10M13_2 OS=Arabidopsis thaliana
           GN=At4g02010 PE=1 SV=1
          Length = 725

 Score = 35.0 bits (79), Expect = 2.5
 Identities = 15/21 (71%), Positives = 18/21 (85%)
 Frame = -2

Query: 432 AFDNEVFSRSAVFSEDLHEGR 370
           AFD+E  +R+ VFSEDLHEGR
Sbjct: 705 AFDHENITRTTVFSEDLHEGR 725


>tr|O04245|O04245_ARATH Putative NAK-like ser/thr protein kinase
           OS=Arabidopsis thaliana GN=T10M13.2 PE=2 SV=2
          Length = 707

 Score = 35.0 bits (79), Expect = 2.5
 Identities = 15/21 (71%), Positives = 18/21 (85%)
 Frame = -2

Query: 432 AFDNEVFSRSAVFSEDLHEGR 370
           AFD+E  +R+ VFSEDLHEGR
Sbjct: 687 AFDHENITRTTVFSEDLHEGR 707


>tr|B0ERD4|B0ERD4_ENTDI Putative uncharacterized protein
           OS=Entamoeba dispar SAW760 GN=EDI_240930 PE=4 SV=1
          Length = 465

 Score = 34.7 bits (78), Expect = 3.3
 Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
 Frame = -2

Query: 399 VFSEDLHEGR*KSRYFPLQSNHR*SCIF-NQYLKLFLRATHVALLLPVMSLVIN 241
           +F ++L E   +++YFPLQS       F N+Y KLFL      +L PV+ L+++
Sbjct: 68  MFEKELTENPPETKYFPLQSKLSLFITFYNEYSKLFLMDYLKHVLTPVLDLIVS 121


>tr|B7ZX23|B7ZX23_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 750

 Score = 33.5 bits (75), Expect = 7.3
 Identities = 14/20 (70%), Positives = 16/20 (80%)
 Frame = -2

Query: 429 FDNEVFSRSAVFSEDLHEGR 370
           F+ E   R+AVFSEDLHEGR
Sbjct: 731 FETETIPRTAVFSEDLHEGR 750