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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP911450
Clone id YMU001_000005_B04
Library
Length 522
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000005_B04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TTTTTTTTTTTTTTTTTCGTACGTAAGGTTTTGTGATGAATTTCCTGATAGAGAGAAGGG
TCTTTCATTACAAAATAAATGTATACACTGGTGATGAGTTAGTGGTTAGCATCACCATGA
TTCCCTTGCATTTTCTTACCCATGGTACAAAGAACCAGCTTCATCTGGTAAAAGAACCTT
GACAATTCCCACACAAGCAAGCAAGCGTCGTCAAAAGAGCACACAAATGTAGAGTTATTA
CAACAAATCTTCAAGGGAATCCCGCTGGACGGAAGAGCAACTTTCCTTCTCGAAAGAAGC
ATCTTCTTCCTCGACGACTTCCTCAAGACTCTCTAAAGAGGCATCATCTTCACCTATTGC
TGCCTTTTGCCTAGCTCTTCAGCTCCACTGTGATCGTTTGTGGACGAGACCTCAAGATTT
CTTGAGGAAGCTGCTGAATTGCGTGTTTGCACGATTGGTGTGAGCCCTCCTTTGCGTCCT
AGCGGAGGAAGGTTTCCCGTTAACGACGCCGATGAGGATCTC
■■Homology search results ■■ -
sp_hit_id P09278
Definition sp|P09278|TEGU_VZVD Large tegument protein OS=Varicella-zoster virus (strain Dumas)
Align length 93
Score (bit) 31.2
E-value 2.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911450|Adiantum capillus-veneris mRNA, clone:
YMU001_000005_B04.
         (505 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P09278|TEGU_VZVD Large tegument protein OS=Varicella-zoster v...    31   2.9  
sp|Q9N0E1|AACS_MACFA Acetoacetyl-CoA synthetase OS=Macaca fascic...    30   4.9  
sp|Q86V21|AACS_HUMAN Acetoacetyl-CoA synthetase OS=Homo sapiens ...    30   4.9  
sp|Q6NWY9|PR40B_HUMAN Pre-mRNA-processing factor 40 homolog B OS...    30   8.3  

>sp|P09278|TEGU_VZVD Large tegument protein OS=Varicella-zoster virus
            (strain Dumas) GN=22 PE=3 SV=1
          Length = 2763

 Score = 31.2 bits (69), Expect = 2.9
 Identities = 23/93 (24%), Positives = 41/93 (44%), Gaps = 2/93 (2%)
 Frame = +1

Query: 31   IERRVFHYKINVYTGDELVVSITMIPLHFLTHGTKNQLHLVKEP*QFPHKQASVVKRAHK 210
            I+RR     + +   D + + +   P+H L      +L L+K+          V++ A +
Sbjct: 2009 IQRRGDVRVLELTLSDIVTILVATTPVHLLNFA---RLDLIKQHEYMARTLRPVIEAAFR 2065

Query: 211  CRVITTNLQGNPAGRKSNF--PSRKKHLLPRRL 303
             R++  +L G+P G    F   +  KH LP  L
Sbjct: 2066 GRLLVRSLDGDPKGNARAFFNAAPSKHKLPLAL 2098


>sp|Q9N0E1|AACS_MACFA Acetoacetyl-CoA synthetase OS=Macaca
           fascicularis GN=AACS PE=2 SV=1
          Length = 672

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 12/53 (22%)
 Frame = +2

Query: 191 SSKEHTNVELLQQIFKGIP----------LDGRATFLLER--SIFFLDDFLKT 313
           + KEH+++E LQQ+ KG+P          +  R    L +  +  FLDDFL T
Sbjct: 213 NGKEHSHMEKLQQVVKGLPDLKKVVVIPYVSSREKIDLSKIPNSVFLDDFLAT 265


>sp|Q86V21|AACS_HUMAN Acetoacetyl-CoA synthetase OS=Homo sapiens
           GN=AACS PE=1 SV=1
          Length = 672

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 12/53 (22%)
 Frame = +2

Query: 191 SSKEHTNVELLQQIFKGIP----------LDGRATFLLER--SIFFLDDFLKT 313
           + KEH ++E LQQ+ KG+P          +  R    L +  +  FLDDFL T
Sbjct: 213 NGKEHNHMEKLQQVVKGLPDLKKVVVIPYVSSRENIDLSKIPNSVFLDDFLAT 265


>sp|Q6NWY9|PR40B_HUMAN Pre-mRNA-processing factor 40 homolog B
           OS=Homo sapiens GN=PRPF40B PE=1 SV=1
          Length = 871

 Score = 29.6 bits (65), Expect = 8.3
 Identities = 15/43 (34%), Positives = 18/43 (41%)
 Frame = +3

Query: 126 WYKEPASSGKRTLTIPTQASKRRQKSTQM*SYYNKSSRESRWT 254
           W K      K  L +     K  +  T    YYN  S+ESRWT
Sbjct: 120 WEKPSVLKSKAELLLSQCPWKEYKSDTGKPYYYNNQSKESRWT 162
tr_hit_id A9SCW4
Definition tr|A9SCW4|A9SCW4_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens
Align length 98
Score (bit) 33.1
E-value 7.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911450|Adiantum capillus-veneris mRNA, clone:
YMU001_000005_B04.
         (505 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9SCW4|A9SCW4_PHYPA Predicted protein (Fragment) OS=Physcomit...    33   7.8  

>tr|A9SCW4|A9SCW4_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_127743 PE=4 SV=1
          Length = 288

 Score = 33.1 bits (74), Expect = 7.8
 Identities = 24/98 (24%), Positives = 43/98 (43%)
 Frame = -2

Query: 477 NLPPLGRKGGLTPIVQTRNSAASSRNLEVSSTNDHSGAEELGKRQQ*VKMMPL*RVLRKS 298
           N+  + R  G    ++   S AS RN+E+  T      E++ +  +         ++R+ 
Sbjct: 190 NVKQISRLTGCKLTIRDHESNASMRNVEMEGTY-----EQIERASE---------MVRQF 235

Query: 297 SRKKMLLSRRKVALPSSGIPLKICCNNSTFVCSFDDAC 184
              K ++ +R  A+ S     K+C N S   C+F D C
Sbjct: 236 LSHKEVVPQRVAAIASHNFKTKLCENFSQGTCTFADRC 273