BP911454
Clone id YMU001_000005_B08
Library
Length 519
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000005_B08.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
CATTCGAAACAGGCACCATTATCCTGAGGAGGTTGAGGTGGTGCCCATTTACTTCTTGGT
GGAGGGTTGACTGAGGAACCTCACACATGGTGAAAATCGGGAGATGTGCTTTGCGCATGG
GCTAATTATTTAGAAGTTGAAGTTTATTTTGGCTGCTGATGGACGGCACTCATTTTTGGT
TCGATATGTTATGTTTAGGTCCAATAGAACCGTAGTGCTGAACATCACATCCTCTGTAAA
TGTTCGAATTCACATGGCAGGCAATTGGTTCGGAAACTGTAGGCTTGTTCTTGACTTGTA
CCAGTTGAAAACTTCGGTACAGGAATAAAGCTGGGTACACAGCAACCGGCAATTCAACGT
CCTAGATGTTGTACATTCGTTTGAAAATATCTACAAAATGGACGTGTAGTTGGTCAATTT
TGATAGGACGTTGGTGCGCATTGGAGGGGAGCTTGGGCTCTATTCTGAAACTGCAACTCC
TTTTAACCTTCAATGTTGTCAACCTGGCGTTTGTTCCGG
■■Homology search results ■■ -
sp_hit_id Q740P4
Definition sp|Q740P4|TRPC_MYCPA Indole-3-glycerol phosphate synthase OS=Mycobacterium paratuberculosis
Align length 27
Score (bit) 31.6
E-value 2.3
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP911454|Adiantum capillus-veneris mRNA, clone:
YMU001_000005_B08.
(519 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q740P4|TRPC_MYCPA Indole-3-glycerol phosphate synthase OS=Myc... 32 2.3
sp|A0QHH0|TRPC_MYCA1 Indole-3-glycerol phosphate synthase OS=Myc... 32 2.3
sp|O31939|YONV_BACSU SPBc2 prophage-derived uncharacterized prot... 31 3.0
sp|A1T8X3|TRPC_MYCVP Indole-3-glycerol phosphate synthase OS=Myc... 31 3.0
sp|Q1B7H6|TRPC_MYCSS Indole-3-glycerol phosphate synthase OS=Myc... 31 3.0
sp|A1UHJ6|TRPC_MYCSK Indole-3-glycerol phosphate synthase OS=Myc... 31 3.0
sp|A3Q119|TRPC_MYCSJ Indole-3-glycerol phosphate synthase OS=Myc... 31 3.0
sp|Q9X7C7|TRPC_MYCLE Indole-3-glycerol phosphate synthase OS=Myc... 31 3.0
sp|A0PP28|TRPC_MYCUA Indole-3-glycerol phosphate synthase OS=Myc... 30 5.2
sp|A4T9N5|TRPC_MYCGI Indole-3-glycerol phosphate synthase OS=Myc... 30 6.8
sp|Q02948|VPS30_YEAST Vacuolar protein sorting-associated protei... 30 9.0

>sp|Q740P4|TRPC_MYCPA Indole-3-glycerol phosphate synthase
OS=Mycobacterium paratuberculosis GN=trpC PE=3 SV=1
Length = 272

Score = 31.6 bits (70), Expect = 2.3
Identities = 17/27 (62%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = -3

Query: 517 GTNAR-LTTLKVKRSCSFRIEPKLPSN 440
G NAR L TL+V R C RI P LPSN
Sbjct: 187 GVNARDLATLEVDRDCFARIAPGLPSN 213


>sp|A0QHH0|TRPC_MYCA1 Indole-3-glycerol phosphate synthase
OS=Mycobacterium avium (strain 104) GN=trpC PE=3 SV=1
Length = 272

Score = 31.6 bits (70), Expect = 2.3
Identities = 17/27 (62%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = -3

Query: 517 GTNAR-LTTLKVKRSCSFRIEPKLPSN 440
G NAR L TL+V R C RI P LPSN
Sbjct: 187 GVNARDLATLEVDRDCFARIAPGLPSN 213


>sp|O31939|YONV_BACSU SPBc2 prophage-derived uncharacterized protein
yonV OS=Bacillus subtilis GN=yonV PE=4 SV=1
Length = 410

Score = 31.2 bits (69), Expect = 3.0
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = -3

Query: 490 KVKRSCSFR--IEPKLPSNAHQRPIKIDQLHVHFVD 389
++KRSC+ R EPK+ S + K+D LH H D
Sbjct: 44 RIKRSCTNRKFYEPKIHSEEGETLYKLDSLHKHLAD 79


>sp|A1T8X3|TRPC_MYCVP Indole-3-glycerol phosphate synthase
OS=Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1)
GN=trpC PE=3 SV=1
Length = 272

Score = 31.2 bits (69), Expect = 3.0
Identities = 17/27 (62%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = -3

Query: 517 GTNAR-LTTLKVKRSCSFRIEPKLPSN 440
G NAR L TL+V R C RI P LPSN
Sbjct: 187 GVNARDLKTLEVDRDCFARIAPGLPSN 213


>sp|Q1B7H6|TRPC_MYCSS Indole-3-glycerol phosphate synthase
OS=Mycobacterium sp. (strain MCS) GN=trpC PE=3 SV=1
Length = 272

Score = 31.2 bits (69), Expect = 3.0
Identities = 17/27 (62%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = -3

Query: 517 GTNAR-LTTLKVKRSCSFRIEPKLPSN 440
G NAR L TL+V R C RI P LPSN
Sbjct: 187 GVNARNLKTLEVDRDCFARIAPGLPSN 213


>sp|A1UHJ6|TRPC_MYCSK Indole-3-glycerol phosphate synthase
OS=Mycobacterium sp. (strain KMS) GN=trpC PE=3 SV=1
Length = 272

Score = 31.2 bits (69), Expect = 3.0
Identities = 17/27 (62%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = -3

Query: 517 GTNAR-LTTLKVKRSCSFRIEPKLPSN 440
G NAR L TL+V R C RI P LPSN
Sbjct: 187 GVNARNLKTLEVDRDCFARIAPGLPSN 213


>sp|A3Q119|TRPC_MYCSJ Indole-3-glycerol phosphate synthase
OS=Mycobacterium sp. (strain JLS) GN=trpC PE=3 SV=1
Length = 272

Score = 31.2 bits (69), Expect = 3.0
Identities = 17/27 (62%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = -3

Query: 517 GTNAR-LTTLKVKRSCSFRIEPKLPSN 440
G NAR L TL+V R C RI P LPSN
Sbjct: 187 GVNARNLKTLEVDRDCFARIAPGLPSN 213


>sp|Q9X7C7|TRPC_MYCLE Indole-3-glycerol phosphate synthase
OS=Mycobacterium leprae GN=trpC PE=3 SV=1
Length = 272

Score = 31.2 bits (69), Expect = 3.0
Identities = 17/27 (62%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = -3

Query: 517 GTNAR-LTTLKVKRSCSFRIEPKLPSN 440
G NAR L TL+V R C RI P LPSN
Sbjct: 187 GVNARDLMTLEVDRDCFSRIAPGLPSN 213


>sp|A0PP28|TRPC_MYCUA Indole-3-glycerol phosphate synthase
OS=Mycobacterium ulcerans (strain Agy99) GN=trpC PE=3
SV=1
Length = 272

Score = 30.4 bits (67), Expect = 5.2
Identities = 17/27 (62%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = -3

Query: 517 GTNAR-LTTLKVKRSCSFRIEPKLPSN 440
G NAR LTTL+V R C RI LPSN
Sbjct: 187 GVNARDLTTLEVDRDCFARIASGLPSN 213


>sp|A4T9N5|TRPC_MYCGI Indole-3-glycerol phosphate synthase
OS=Mycobacterium gilvum (strain PYR-GCK) GN=trpC PE=3
SV=1
Length = 272

Score = 30.0 bits (66), Expect = 6.8
Identities = 16/27 (59%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = -3

Query: 517 GTNAR-LTTLKVKRSCSFRIEPKLPSN 440
G NAR L TL+V R C RI P LP+N
Sbjct: 187 GVNARNLKTLEVDRDCFARIAPGLPTN 213


tr_hit_id A2BWV3
Definition tr|A2BWV3|A2BWV3_PROM5 HNH endonuclease:HNH nuclease OS=Prochlorococcus marinus (strain MIT 9515)
Align length 60
Score (bit) 35.8
E-value 1.3
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP911454|Adiantum capillus-veneris mRNA, clone:
YMU001_000005_B08.
(519 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A2BWV3|A2BWV3_PROM5 HNH endonuclease:HNH nuclease OS=Prochlor... 36 1.3
tr|B2HQX7|B2HQX7_MYCMM Indole-3-glycerol phosphate synthase TrpC... 33 6.5

>tr|A2BWV3|A2BWV3_PROM5 HNH endonuclease:HNH nuclease
OS=Prochlorococcus marinus (strain MIT 9515)
GN=P9515_10571 PE=4 SV=1
Length = 113

Score = 35.8 bits (81), Expect = 1.3
Identities = 23/60 (38%), Positives = 31/60 (51%)
Frame = -1

Query: 378 ECTTSRTLNCRLLCTQLYSCTEVFNWYKSRTSLQFPNQLPAM*IRTFTEDVMFSTTVLLD 199
E TS + C L C S TEV NWY+S+ F + +M IR + D + +VLLD
Sbjct: 54 ESITSNCVPCCLSCNGKKSDTEVLNWYRSQ---NFYDPRRSMAIRAWFNDDLKLASVLLD 110


>tr|B2HQX7|B2HQX7_MYCMM Indole-3-glycerol phosphate synthase TrpC
OS=Mycobacterium marinum (strain ATCC BAA-535 / M)
GN=trpC PE=4 SV=1
Length = 272

Score = 33.5 bits (75), Expect = 6.5
Identities = 18/27 (66%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Frame = -3

Query: 517 GTNAR-LTTLKVKRSCSFRIEPKLPSN 440
G NAR LTTL+V R C RI P LPSN
Sbjct: 187 GVNARDLTTLEVDRDCFARIAPGLPSN 213