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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP911455
Clone id YMU001_000005_B09
Library
Length 575
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000005_B09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
ATGTACAAGTGGAAACCTCAAAGCGAGGAAAACCCACGAAAAGAAAGGGATACAAAACAC
GGAGCACTATGAGCCTCCGTAAGGCTAGAAACAGTCAAAATAAATCCATTAGGTTTCAAT
GAGTGATGTCTCCAGCGTCATAGGCAAAATGCAATCCTGTAGGTTTCAAGAGTGATGTCT
CCAGCGTCATAGGCAAAATGCAGTGCTTGACCAAGAGATAATTTGAAATAGGGAAAGGGG
TCAATAAGAGTGCCCTGAAACATTACGGAGTTCCTCAGATGTGAGATGGCCCACATAGTC
CAAAATCTGACCCAGGTGAAGAAAAACCGCAAACTGAGATTGCTATGACCGAAGCACTCC
AAAAGCCAAAATCGTTGTGAAAAGAGCCAAAAGGAAAACGCAGTCGAAGAGCAGTCGACA
CTTGCCGAATGAAGGCTCTGGAGTGATGACAACACCATAGTAAGTGTGGCACGGTCTCGT
CAGCTTCAAGGCATCTGGGGCAGCGGGAAGGCGCAATATGCCAAGCATGCAACACACTGC
CAATAGGTAGAGCTCCTACCAAGCACCGCCGTGTG
■■Homology search results ■■ -
sp_hit_id P40265
Definition sp|P40265|H13_GLYBA Histone H1-III OS=Glyptotendipes barbipes
Align length 32
Score (bit) 32.7
E-value 1.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911455|Adiantum capillus-veneris mRNA, clone:
YMU001_000005_B09.
         (575 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P40265|H13_GLYBA Histone H1-III OS=Glyptotendipes barbipes PE...    33   1.3  

>sp|P40265|H13_GLYBA Histone H1-III OS=Glyptotendipes barbipes PE=3
           SV=1
          Length = 228

 Score = 32.7 bits (73), Expect = 1.3
 Identities = 15/32 (46%), Positives = 21/32 (65%)
 Frame = +3

Query: 297 SPKSDPGEEKPQTEIAMTEALQKPKSL*KEPK 392
           +PK   GE+KPQ      +AL+K KS+ K+PK
Sbjct: 123 TPKKAAGEKKPQAAAKPKKALEKKKSIAKKPK 154
tr_hit_id Q9SIS9
Definition tr|Q9SIS9|Q9SIS9_ARATH Putative non-LTR retroelement reverse transcriptase OS=Arabidopsis thaliana
Align length 52
Score (bit) 37.7
E-value 0.001
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911455|Adiantum capillus-veneris mRNA, clone:
YMU001_000005_B09.
         (575 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q9SIS9|Q9SIS9_ARATH Putative non-LTR retroelement reverse tra...    38   0.001
tr|Q1SMZ7|Q1SMZ7_MEDTR Ribonuclease H OS=Medicago truncatula GN=...    39   0.27 
tr|O64712|O64712_ARATH Putative reverse transcriptase OS=Arabido...    33   0.76 
tr|Q9ZQF8|Q9ZQF8_ARATH Putative non-LTR retroelement reverse tra...    36   1.3  
tr|Q9SZD8|Q9SZD8_ARATH Putative uncharacterized protein F19B15.1...    35   2.3  
tr|B7Q5C0|B7Q5C0_IXOSC Putative uncharacterized protein OS=Ixode...    35   2.3  
tr|Q9LVT7|Q9LVT7_ARATH Similarity to non-LTR retroelement revers...    30   3.5  
tr|Q6ID20|Q6ID20_ARATH At3g42803 OS=Arabidopsis thaliana PE=2 SV=1     35   3.8  
tr|Q76B32|Q76B32_TETNG Reverse transcriptase OS=Tetraodon nigrov...    34   5.0  
tr|Q4T7P5|Q4T7P5_TETNG Chromosome undetermined SCAF8057, whole g...    34   5.0  
tr|B4R8T1|B4R8T1_PHEZH Putative uncharacterized protein OS=Pheny...    34   5.0  
tr|B4NX04|B4NX04_DROYA GE18776 OS=Drosophila yakuba GN=GE18776 P...    33   8.6  

>tr|Q9SIS9|Q9SIS9_ARATH Putative non-LTR retroelement reverse
            transcriptase OS=Arabidopsis thaliana GN=At2g01840 PE=2
            SV=1
          Length = 1715

 Score = 37.7 bits (86), Expect(2) = 0.001
 Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = -2

Query: 568  RCLVGALPIGSVLHAWHI-APSRCPRCLEADETVPHLLWCCHHSRAFIRQVS 416
            RCL GAL   + L   +I A   C RC  ADET+ H+++ C +++   R  +
Sbjct: 1403 RCLSGALSTTTQLRNRNIPADPTCQRCCNADETINHIIFTCSYAQVVWRSAN 1454



 Score = 27.7 bits (60), Expect(2) = 0.001
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -1

Query: 350  GHSNLSLRFFFTWVRFWTMWAISHLRNSVMFQGTLIDPFPY 228
            G  N +L      + FW MW +   RN  +FQ   +D FP+
Sbjct: 1477 GKKNQNLPILNGLMPFWIMWRLWKSRNEYLFQ--QLDRFPW 1515


>tr|Q1SMZ7|Q1SMZ7_MEDTR Ribonuclease H OS=Medicago truncatula
           GN=MtrDRAFT_AC139526g25v2 PE=4 SV=1
          Length = 438

 Score = 38.5 bits (88), Expect = 0.27
 Identities = 24/62 (38%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
 Frame = -2

Query: 550 LPIGSVLHAWHIAPS-RCPRCLEADETVPHLLWCCHHSRAFIRQVSTALRLRFPFGSFHN 374
           +P  S+LH  +IAPS  C RC E DET  H +  CH SR+  +++       F   S H+
Sbjct: 144 VPTLSLLHRRNIAPSPTCARCGEEDETFLHCVRDCHFSRSIWQKIGFTGNDFFTATSAHD 203

Query: 373 DF 368
            F
Sbjct: 204 WF 205


>tr|O64712|O64712_ARATH Putative reverse transcriptase
           OS=Arabidopsis thaliana GN=At2g02650 PE=2 SV=1
          Length = 365

 Score = 32.7 bits (73), Expect(2) = 0.76
 Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
 Frame = -2

Query: 568 RCLVGALPIGSVLHAWHI-APSRCPRCLEADETVPHLLWCCHHSRAFIRQVS 416
           RC+ GAL   + L + +I A   C RC   +ET+ H+++ C ++++  R  +
Sbjct: 52  RCVTGALATNTRLRSRNIDADPICQRCCIEEETIHHIMFNCPYTQSVWRSAN 103



 Score = 23.1 bits (48), Expect(2) = 0.76
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -1

Query: 305 FWTMWAISHLRNSVMFQ 255
           FW MW +   RN  +FQ
Sbjct: 141 FWIMWRLWKSRNVFLFQ 157


>tr|Q9ZQF8|Q9ZQF8_ARATH Putative non-LTR retroelement reverse
            transcriptase OS=Arabidopsis thaliana GN=At2g15540 PE=2
            SV=1
          Length = 1225

 Score = 36.2 bits (82), Expect = 1.3
 Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = -2

Query: 568  RCLVGALPIGSVLHAWHIAPSR-CPRCLEADETVPHLLWCCHHSR 437
            +CL G L     L + HI   + CPRC   +E++ HLL+ C  SR
Sbjct: 941  QCLSGCLATNQRLFSRHIGTEKVCPRCGAEEESINHLLFLCPPSR 985


>tr|Q9SZD8|Q9SZD8_ARATH Putative uncharacterized protein F19B15.120
           (Putative reverse transcriptase/RNA-dependent DNA
           polymerase) (Putative uncharacterized protein AT4g29090)
           OS=Arabidopsis thaliana GN=F19B15.120 PE=2 SV=1
          Length = 575

 Score = 35.4 bits (80), Expect = 2.3
 Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = -2

Query: 568 RCLVGALPIGSVLHAWHIAP-SRCPRCLEADETVPHLLWCCHHSR 437
           +CL  +LP+   L   H++  S C RC    ETV HLL+ C  +R
Sbjct: 272 KCLSNSLPVAGALAYRHLSKESACIRCPSCKETVNHLLFKCTFAR 316


>tr|B7Q5C0|B7Q5C0_IXOSC Putative uncharacterized protein OS=Ixodes
           scapularis GN=IscW_ISCW021833 PE=4 SV=1
          Length = 1299

 Score = 35.4 bits (80), Expect = 2.3
 Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
 Frame = +3

Query: 336 EIAMTEALQKPKSL*KEPKGKRSRRAVDTCRMKALE**QHHSKCGTVSSAS-RHLGQREG 512
           ++A TE LQK   L +E   +R    ++  R+KA E      KC +   A+ RH+     
Sbjct: 688 QLATTEELQKKIQLKQEESARRHEENMEQIRLKAFE--LSVRKCSSNDDAAPRHVPYETK 745

Query: 513 AICQACNTL 539
            IC  CN L
Sbjct: 746 KICSLCNVL 754


>tr|Q9LVT7|Q9LVT7_ARATH Similarity to non-LTR retroelement reverse
           transcriptase OS=Arabidopsis thaliana PE=4 SV=1
          Length = 329

 Score = 29.6 bits (65), Expect(2) = 3.5
 Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
 Frame = -2

Query: 505 RCPRCLEADETVPHLLWCCHHSR-AFIRQVSTALRLRFPFGSFHN--DFGFWSASVI 344
           +CPRC   +ET+ HL++ C  +R  +      +   RF   S +N  D+ +W A+ I
Sbjct: 50  KCPRCGADEETINHLIFECPPARQVWALSGIPSSPSRFLSSSIYNNLDYLYWRANEI 106



 Score = 23.9 bits (50), Expect(2) = 3.5
 Identities = 14/45 (31%), Positives = 17/45 (37%)
 Frame = -1

Query: 371 FWLLECFGHSNLSLRFFFTWVRFWTMWAISHLRNSVMFQGTLIDP 237
           +W     G    SLR F      W MW I   RN   F+   + P
Sbjct: 100 YWRANEIGACEESLRVFP-----WIMWYIWKARNRKNFESICVQP 139


>tr|Q6ID20|Q6ID20_ARATH At3g42803 OS=Arabidopsis thaliana PE=2 SV=1
          Length = 146

 Score = 34.7 bits (78), Expect = 3.8
 Identities = 28/73 (38%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
 Frame = -2

Query: 565 CLVGALPIGSVLHAWHI-APSRCPRCLEADETVPHLLWCCHHSR-AFIRQVSTALRLRFP 392
           C+   L     L   HI A   CP C E +ET+ HLL+ C  SR  +   +   L   FP
Sbjct: 62  CISSCLATCQKLTYRHIGAVKGCPHCGEVEETINHLLFHCLPSRQTWALSLIPTLGNIFP 121

Query: 391 FGS-FHN-DFGFW 359
             S F+N DF FW
Sbjct: 122 RNSLFYNFDFLFW 134


>tr|Q76B32|Q76B32_TETNG Reverse transcriptase OS=Tetraodon
            nigroviridis GN=ORF2 PE=4 SV=1
          Length = 1119

 Score = 34.3 bits (77), Expect = 5.0
 Identities = 24/56 (42%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
 Frame = -2

Query: 550  LPIGSVLHAWHIAP-SRCPRC-LEADETVPHLLWCCHHSRAFIRQVSTALRLRFPF 389
            LP+ SV+H+  +A  S CPR    A E+V HLLW C    A + Q + A  L+FP+
Sbjct: 990  LPVRSVMHSRGMAAHSTCPRPGCGAPESVRHLLWEC---SAAVDQWAMAGSLQFPY 1042


>tr|Q4T7P5|Q4T7P5_TETNG Chromosome undetermined SCAF8057, whole
           genome shotgun sequence OS=Tetraodon nigroviridis
           GN=GSTENG00005629001 PE=4 SV=1
          Length = 136

 Score = 34.3 bits (77), Expect = 5.0
 Identities = 24/56 (42%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
 Frame = -2

Query: 550 LPIGSVLHAWHIAP-SRCPRC-LEADETVPHLLWCCHHSRAFIRQVSTALRLRFPF 389
           LP+ SV+H+  +A  S CPR    A E+V HLLW C    A + Q + A  L+FP+
Sbjct: 7   LPVRSVMHSRGMAAHSTCPRPGCGAPESVRHLLWEC---SAAVDQWAMAGSLQFPY 59