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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP911462
Clone id YMU001_000005_C04
Library
Length 178
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000005_C04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CTCTTCACTGCATGTCATCACTTATCTAAAACTTTCAGAATACAGCATTATGTTGTTACT
CCAAAGAGAAAACTTCCTTGAAAGCCTGCAAAGTATTACTGTCCCATCCTTATACTTTAC
GTATTATATCAGCCTCATTCACAAACTGCATGTAGAAATCCTGTGAGATATGCTTTCT
■■Homology search results ■■ -
sp_hit_id Q9LXR1
Definition sp|Q9LXR1|FB208_ARATH Putative F-box protein At3g58910 OS=Arabidopsis thaliana
Align length 47
Score (bit) 30.0
E-value 3.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911462|Adiantum capillus-veneris mRNA, clone:
YMU001_000005_C04.
         (178 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9LXR1|FB208_ARATH Putative F-box protein At3g58910 OS=Arabid...    30   3.7  

>sp|Q9LXR1|FB208_ARATH Putative F-box protein At3g58910
           OS=Arabidopsis thaliana GN=At3g58910 PE=4 SV=1
          Length = 214

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 12/47 (25%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
 Frame = +2

Query: 11  HVITYLKLSEYSIMLLLQRENFLESLQSITVPSL-YFTYYISLIHKL 148
           H++++L   E ++  LL +   +  ++S+  P+L Y ++ + L+ KL
Sbjct: 14  HILSFLTTKETALTSLLSKREIIPLIKSVVFPTLIYASFLVQLVSKL 60
tr_hit_id A6L5W6
Definition tr|A6L5W6|A6L5W6_BACV8 Putative uncharacterized protein OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154)
Align length 42
Score (bit) 32.7
E-value 9.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911462|Adiantum capillus-veneris mRNA, clone:
YMU001_000005_C04.
         (178 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A6L5W6|A6L5W6_BACV8 Putative uncharacterized protein OS=Bacte...    33   9.5  

>tr|A6L5W6|A6L5W6_BACV8 Putative uncharacterized protein
           OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 /
           NCTC 11154) GN=BVU_3456 PE=4 SV=1
          Length = 56

 Score = 32.7 bits (73), Expect = 9.5
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +1

Query: 34  FRIQHYVVTPKRKLP*KPAKYYCPILILYVLYQPHSQTACRN 159
           ++IQ   +   R +P  PA Y CP+L + +   PH    C+N
Sbjct: 4   YKIQQTRLPGTRYMPTLPASYACPVLGMNLACSPHLPDGCKN 45