BP911465 |
Clone id |
YMU001_000005_C07 |
Library |
YMU01 |
Length |
577 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000005_C07. |
Accession |
BP911465 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
- |
Sequence |
CTGGAATGTTAATTGATTGGATTGCAGAAGCATCTTCCCACAAACTTAACGTCACAGCTT TCTGCATTGTCTTGTTTACGGAAGGTAAGTCTTCCTTAAAACCTTCAAATGCATTCTTCA TAAGAGTTTTATCATTTTCTAAAATCTGCCAGAATTTGCTTCTTTTTTGTACTTCTGAAA CATTTCTAGATTTTGATGGTGCCATGCCAGCAATCTCCATAGAATCTTGCGCACGGTTCT GACCATTCACTTTTCCACTGCTAGATTTAACTGTACCTGACCAAACATCTAAGGAGATGG TTGAGGCATCCGCTTGAGCTAAATCACACCCTGTGCTTTGTCCCAATCTCTTTTCAATCC CAGCATTGGTAGCTCGGCTAGAGAGCATGCTGTAAACTTGGGAGATAACTAGTCGTCTGA CATTCAATCTCTTCAAATGCTTAGCCACATTACCCTGCCAATGTGAAGAAGTTACCGGAC CAGCTTGATGGAACCCTTGCAAATTTGGTGTTCTTCCCGGGTGGAATTGACCTGTCATTG GCGAGGTGTACGCCATTGAGTACCTGCAGGTAATATC |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
A8ADQ4 |
Definition |
sp|A8ADQ4|MNMC_CITK8 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein mnmC OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) |
Align length |
93 |
Score (bit) |
35.0 |
E-value |
0.27 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP911465|Adiantum capillus-veneris mRNA, clone: YMU001_000005_C07. (577 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|A8ADQ4|MNMC_CITK8 tRNA 5-methylaminomethyl-2-thiouridine bios... 35 0.27 sp|Q57LX5|MNMC_SALCH tRNA 5-methylaminomethyl-2-thiouridine bios... 33 1.0 sp|Q83QQ8|MNMC_SHIFL tRNA 5-methylaminomethyl-2-thiouridine bios... 33 1.3 sp|Q1R988|MNMC_ECOUT tRNA 5-methylaminomethyl-2-thiouridine bios... 32 1.8 sp|A1ADH3|MNMC_ECOK1 tRNA 5-methylaminomethyl-2-thiouridine bios... 32 1.8 sp|Q18DN4|HMU_HALWD Halomucin OS=Haloquadratum walsbyi (strain D... 32 1.8 sp|Q32DL2|MNMC_SHIDS tRNA 5-methylaminomethyl-2-thiouridine bios... 32 3.0 sp|Q8ZNB2|MNMC_SALTY tRNA 5-methylaminomethyl-2-thiouridine bios... 32 3.0 sp|Q8Z4Z3|MNMC_SALTI tRNA 5-methylaminomethyl-2-thiouridine bios... 32 3.0 sp|A9N465|MNMC_SALPB tRNA 5-methylaminomethyl-2-thiouridine bios... 32 3.0 sp|Q5PCW7|MNMC_SALPA tRNA 5-methylaminomethyl-2-thiouridine bios... 32 3.0 sp|A4WCV7|MNMC_ENT38 tRNA 5-methylaminomethyl-2-thiouridine bios... 32 3.0 sp|Q8FFH0|MNMC_ECOL6 tRNA 5-methylaminomethyl-2-thiouridine bios... 32 3.0 sp|Q0TFC2|MNMC_ECOL5 tRNA 5-methylaminomethyl-2-thiouridine bios... 32 3.0 sp|Q0T2G1|MNMC_SHIF8 tRNA 5-methylaminomethyl-2-thiouridine bios... 31 3.9 sp|B2TWA6|MNMC_SHIB3 tRNA 5-methylaminomethyl-2-thiouridine bios... 31 3.9 sp|A9MJ47|MNMC_SALAR tRNA 5-methylaminomethyl-2-thiouridine bios... 31 3.9 sp|P77182|MNMC_ECOLI tRNA 5-methylaminomethyl-2-thiouridine bios... 31 3.9 sp|B1IXC1|MNMC_ECOLC tRNA 5-methylaminomethyl-2-thiouridine bios... 31 3.9 sp|A8A2J3|MNMC_ECOHS tRNA 5-methylaminomethyl-2-thiouridine bios... 31 3.9 sp|B1X935|MNMC_ECODH tRNA 5-methylaminomethyl-2-thiouridine bios... 31 3.9 sp|A7ZPE0|MNMC_ECO24 tRNA 5-methylaminomethyl-2-thiouridine bios... 31 3.9 sp|Q31YD4|MNMC_SHIBS tRNA 5-methylaminomethyl-2-thiouridine bios... 31 5.1 sp|A6TC10|MNMC_KLEP7 tRNA 5-methylaminomethyl-2-thiouridine bios... 31 5.1 sp|A7MH59|MNMC_ENTS8 tRNA 5-methylaminomethyl-2-thiouridine bios... 30 6.7 sp|Q91ZW9|C209C_MOUSE CD209 antigen-like protein C OS=Mus muscul... 30 8.6 sp|Q08491|SKI7_YEAST Superkiller protein 7 OS=Saccharomyces cere... 30 8.7 sp|B1IVH5|RHAA_ECOLC L-rhamnose isomerase OS=Escherichia coli (s... 30 8.7 sp|Q9R9J1|MYCA_BACSU Mycosubtilin synthetase subunit A OS=Bacill... 30 8.7 sp|Q8XCQ7|MNMC_ECO57 tRNA 5-methylaminomethyl-2-thiouridine bios... 30 8.7
>sp|A8ADQ4|MNMC_CITK8 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein mnmC OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=mnmC PE=3 SV=2 Length = 666
Score = 35.0 bits (79), Expect = 0.27 Identities = 25/93 (26%), Positives = 42/93 (45%), Gaps = 2/93 (2%) Frame = -1
Query: 331 GCDLAQADASTISLDVWSGTVKSSSGKVN-GQNRAQDSMEIAGMAPSKSRNVSEVQKRSK 155 GC D ++LD+W G + +GK++ N+ D+ + G AP+K+ ++ S Sbjct: 137 GCHRLILDDGRVTLDLWFGDINELTGKLDESLNQKVDAWFLDGFAPAKNPDMWTQNLFST 196
Query: 154 FWQILENDKTLMKNAFEGF-KEDLPSVNKTMQK 59 ++ TL GF + L TMQK Sbjct: 197 MARLARPGGTLATFTSAGFVRRGLQEAGFTMQK 229
>sp|Q57LX5|MNMC_SALCH tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein mnmC OS=Salmonella choleraesuis GN=mnmC PE=3 SV=2 Length = 666
Score = 33.1 bits (74), Expect = 1.0 Identities = 23/93 (24%), Positives = 42/93 (45%), Gaps = 2/93 (2%) Frame = -1
Query: 331 GCDLAQADASTISLDVWSGTVKSSSGKVNGQ-NRAQDSMEIAGMAPSKSRNVSEVQKRSK 155 GC D S ++LD+W G + + +++ N+ D+ + G AP+K+ ++ + Sbjct: 137 GCHRLLLDRSRVTLDLWFGDINELTDQLDATLNQTVDAWFLDGFAPAKNPDMWTPNLFNA 196
Query: 154 FWQILENDKTLMKNAFEGF-KEDLPSVNKTMQK 59 ++ TL GF + L TMQK Sbjct: 197 MARLARPGATLATFTSAGFVRRGLQEAGFTMQK 229
>sp|Q83QQ8|MNMC_SHIFL tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein mnmC OS=Shigella flexneri GN=mnmC PE=3 SV=2 Length = 668
Score = 32.7 bits (73), Expect = 1.3 Identities = 23/93 (24%), Positives = 42/93 (45%), Gaps = 2/93 (2%) Frame = -1
Query: 331 GCDLAQADASTISLDVWSGTVKSSSGKVNGQ-NRAQDSMEIAGMAPSKSRNVSEVQKRSK 155 GC D S ++LD+W G + + +++ N+ D+ + G AP+K+ ++ + Sbjct: 137 GCHRLLLDESRVTLDLWFGDINELTSQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNA 196
Query: 154 FWQILENDKTLMKNAFEGF-KEDLPSVNKTMQK 59 ++ TL GF + L TMQK Sbjct: 197 MARLARPGGTLATFTSAGFVRRGLQEAGFTMQK 229
>sp|Q1R988|MNMC_ECOUT tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein mnmC OS=Escherichia coli (strain UTI89 / UPEC) GN=mnmC PE=3 SV=2 Length = 668
Score = 32.3 bits (72), Expect = 1.8 Identities = 23/93 (24%), Positives = 41/93 (44%), Gaps = 2/93 (2%) Frame = -1
Query: 331 GCDLAQADASTISLDVWSGTVKSSSGKVNGQ-NRAQDSMEIAGMAPSKSRNVSEVQKRSK 155 GC D I+LD+W G + + +++ N+ D+ + G AP+K+ ++ + Sbjct: 137 GCHRLLLDEGRITLDLWFGDINELTSQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNA 196
Query: 154 FWQILENDKTLMKNAFEGF-KEDLPSVNKTMQK 59 ++ TL GF + L TMQK Sbjct: 197 MARLARPGSTLATFTSAGFVRRGLQEAGFTMQK 229
>sp|A1ADH3|MNMC_ECOK1 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein mnmC OS=Escherichia coli O1:K1 / APEC GN=mnmC PE=3 SV=1 Length = 668
Score = 32.3 bits (72), Expect = 1.8 Identities = 23/93 (24%), Positives = 41/93 (44%), Gaps = 2/93 (2%) Frame = -1
Query: 331 GCDLAQADASTISLDVWSGTVKSSSGKVNGQ-NRAQDSMEIAGMAPSKSRNVSEVQKRSK 155 GC D I+LD+W G + + +++ N+ D+ + G AP+K+ ++ + Sbjct: 137 GCHRLLLDEGRITLDLWFGDINELTSQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNA 196
Query: 154 FWQILENDKTLMKNAFEGF-KEDLPSVNKTMQK 59 ++ TL GF + L TMQK Sbjct: 197 MARLARPGSTLATFTSAGFVRRGLQEAGFTMQK 229
>sp|Q18DN4|HMU_HALWD Halomucin OS=Haloquadratum walsbyi (strain DSM 16790) GN=hmu PE=4 SV=1 Length = 9159
Score = 32.3 bits (72), Expect = 1.8 Identities = 31/96 (32%), Positives = 41/96 (42%) Frame = -1
Query: 535 TGQFHPGRTPNLQGFHQAGPVTSSHWQGNVAKHLKRLNVRRLVISQVYSMLSSRATNAGI 356 TGQ + L GFH+ G V +SH QGNV+ NV L+ G+ Sbjct: 4775 TGQ----KVGGLIGFHRTGSVDNSHAQGNVSAG-SGDNVGGLI---------------GV 4814
Query: 355 EKRLGQSTGCDLAQADASTISLDVWSGTVKSSSGKV 248 R G G A+ D +T +V G + S GKV Sbjct: 4815 HGRNGGRVGDSYARGDVNTSGNNV-GGLIGRSEGKV 4849
Score = 31.2 bits (69), Expect = 3.9 Identities = 23/57 (40%), Positives = 28/57 (49%), Gaps = 1/57 (1%) Frame = -1
Query: 343 GQSTGCDLAQADASTISLDVWSGTVKSSSGKVNGQNRAQDSMEIAGMA-PSKSRNVS 176 GQS G L ADAS I +G V S+ V G D ++A +A S S NVS Sbjct: 3246 GQSVGGLLGSADASIIRRSSATGDVNSTGSNVGGLIGKHDPSQVATIANVSASGNVS 3302
>sp|Q32DL2|MNMC_SHIDS tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein mnmC OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=mnmC PE=3 SV=2 Length = 668
Score = 31.6 bits (70), Expect = 3.0 Identities = 22/93 (23%), Positives = 41/93 (44%), Gaps = 2/93 (2%) Frame = -1
Query: 331 GCDLAQADASTISLDVWSGTVKSSSGKVNGQ-NRAQDSMEIAGMAPSKSRNVSEVQKRSK 155 GC D ++LD+W G + + +++ N+ D+ + G AP+K+ ++ + Sbjct: 137 GCHRLLLDEGRVTLDLWFGDINELTSQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNA 196
Query: 154 FWQILENDKTLMKNAFEGF-KEDLPSVNKTMQK 59 ++ TL GF + L TMQK Sbjct: 197 MARLARPSGTLATFTSAGFVRRGLQDAGFTMQK 229
>sp|Q8ZNB2|MNMC_SALTY tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein mnmC OS=Salmonella typhimurium GN=mnmC PE=3 SV=2 Length = 666
Score = 31.6 bits (70), Expect = 3.0 Identities = 22/93 (23%), Positives = 41/93 (44%), Gaps = 2/93 (2%) Frame = -1
Query: 331 GCDLAQADASTISLDVWSGTVKSSSGKVNGQ-NRAQDSMEIAGMAPSKSRNVSEVQKRSK 155 GC D ++LD+W G + + +++ N+ D+ + G AP+K+ ++ + Sbjct: 137 GCHRLLLDRGRVTLDLWFGDINELTDQLDATLNQTVDAWFLDGFAPAKNPDMWTPNLFNA 196
Query: 154 FWQILENDKTLMKNAFEGF-KEDLPSVNKTMQK 59 ++ TL GF + L TMQK Sbjct: 197 MARLARPGATLATFTSAGFVRRGLQEAGFTMQK 229
>sp|Q8Z4Z3|MNMC_SALTI tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein mnmC OS=Salmonella typhi GN=mnmC PE=3 SV=2 Length = 666
Score = 31.6 bits (70), Expect = 3.0 Identities = 22/93 (23%), Positives = 41/93 (44%), Gaps = 2/93 (2%) Frame = -1
Query: 331 GCDLAQADASTISLDVWSGTVKSSSGKVNGQ-NRAQDSMEIAGMAPSKSRNVSEVQKRSK 155 GC D ++LD+W G + + +++ N+ D+ + G AP+K+ ++ + Sbjct: 137 GCHRLLLDRGRVTLDLWFGDINELTDQLDATLNQTVDAWFLDGFAPAKNPDMWTPNLFNA 196
Query: 154 FWQILENDKTLMKNAFEGF-KEDLPSVNKTMQK 59 ++ TL GF + L TMQK Sbjct: 197 MARLARPGATLATFTSAGFVRRGLQEAGFTMQK 229
>sp|A9N465|MNMC_SALPB tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein mnmC OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=mnmC PE=3 SV=1 Length = 666
Score = 31.6 bits (70), Expect = 3.0 Identities = 22/93 (23%), Positives = 41/93 (44%), Gaps = 2/93 (2%) Frame = -1
Query: 331 GCDLAQADASTISLDVWSGTVKSSSGKVNGQ-NRAQDSMEIAGMAPSKSRNVSEVQKRSK 155 GC D ++LD+W G + + +++ N+ D+ + G AP+K+ ++ + Sbjct: 137 GCHRLLLDRGRVTLDLWFGDINELTDQLDATLNQTVDAWFLDGFAPAKNPDMWTPNLFNA 196
Query: 154 FWQILENDKTLMKNAFEGF-KEDLPSVNKTMQK 59 ++ TL GF + L TMQK Sbjct: 197 MARLARPGATLATFTSAGFVRRGLQEAGFTMQK 229
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q10PA8 |
Definition |
tr|Q10PA8|Q10PA8_ORYSJ Os03g0240900 protein OS=Oryza sativa subsp. japonica |
Align length |
74 |
Score (bit) |
37.0 |
E-value |
0.79 |
Report |
|