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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP911485
Clone id YMU001_000005_E04
Library
Length 490
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000005_E04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
AGCTGTAACCTGCTTGGAAACAATTCAACCTCTAATGTGTCATCTGGTATCTTGTGCATG
GCTCCATGAAAATCCTTGCCATCACCATTAACGTTAGATCAACTCTGACACAATGTTGTC
AAGGAAACACTCCCCCAGAAAACTGACCCACTGCTGTTAACTGAAGATTCGATTGGTGTA
TCATTCCCACTACAGGAGGAGTTAATTTCCGCAGAAGTGATAAAAACAATAACAGCACCA
TCTCTCTTGACAGTAAGTAGCAGCTTCTTTAATTCTGGGAGAAGAAAAGTGACTGATGAC
TGCTCTTTACTGTGAGCAGCAGACAAACTTAAAGACATAGTTCTCAAGACACGAGTTTGA
CTGAGCCGAAAGCAAGAGTTTCCCGCTTTAGCACTAGTCACAGGAGTAGTTAACATCAAA
AGTACAGACTGAAACGCCTGCTCCTCCAATATTAATCTATTGCTCAAGCGAGCATCACAT
TTAGTTACTG
■■Homology search results ■■ -
sp_hit_id P0C2F7
Definition sp|P0C2F7|Y1947_ARATH Kelch repeat-containing protein At1g19470 OS=Arabidopsis thaliana
Align length 39
Score (bit) 32.7
E-value 0.92
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911485|Adiantum capillus-veneris mRNA, clone:
YMU001_000005_E04.
         (490 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P0C2F7|Y1947_ARATH Kelch repeat-containing protein At1g19470 ...    33   0.92 
sp|Q8R5M2|WNT9A_MOUSE Protein Wnt-9a OS=Mus musculus GN=Wnt9a PE...    32   2.0  
sp|O14904|WNT9A_HUMAN Protein Wnt-9a OS=Homo sapiens GN=WNT9A PE...    32   2.0  
sp|Q96WV6|YHU2_SCHPO Uncharacterized threonine-rich GPI-anchored...    31   2.6  
sp|Q3ED93|Y1946_ARATH Kelch repeat-containing protein At1g19460 ...    31   2.7  
sp|O42280|WNT9A_CHICK Protein Wnt-9a OS=Gallus gallus GN=WNT9A P...    30   7.8  
sp|Q88KY8|STHA_PSEPK Soluble pyridine nucleotide transhydrogenas...    30   7.8  
sp|B0KH90|STHA_PSEPG Soluble pyridine nucleotide transhydrogenas...    30   7.8  
sp|A5W6F5|STHA_PSEP1 Soluble pyridine nucleotide transhydrogenas...    30   7.8  
sp|Q1I7F0|STHA_PSEE4 Soluble pyridine nucleotide transhydrogenas...    30   7.8  

>sp|P0C2F7|Y1947_ARATH Kelch repeat-containing protein At1g19470
           OS=Arabidopsis thaliana GN=At1g19470 PE=2 SV=1
          Length = 412

 Score = 32.7 bits (73), Expect = 0.92
 Identities = 20/39 (51%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
 Frame = +1

Query: 163 EDSIGVSFPLQEELISAEV--IKTITAPSLLTVSSSFFN 273
           ED+  VSFP+  EL  A V  I+    PSL +VSS FFN
Sbjct: 49  EDNRSVSFPIPNELTEACVALIRKCDYPSLSSVSSYFFN 87


>sp|Q8R5M2|WNT9A_MOUSE Protein Wnt-9a OS=Mus musculus GN=Wnt9a PE=2
           SV=1
          Length = 365

 Score = 31.6 bits (70), Expect = 2.0
 Identities = 14/55 (25%), Positives = 21/55 (38%)
 Frame = -2

Query: 393 C*SGKLLLSAQSNSCLENYVFKFVCCSQ*RAVISHFSSPRIKEAATYCQERWCCY 229
           C +G+         C      + +CC +      H +  R+      CQ RWCCY
Sbjct: 299 CLAGRFSPGTAGRRCHREKNCESICCGR-----GHNTQSRVVTRPCQCQVRWCCY 348


>sp|O14904|WNT9A_HUMAN Protein Wnt-9a OS=Homo sapiens GN=WNT9A PE=2
           SV=2
          Length = 365

 Score = 31.6 bits (70), Expect = 2.0
 Identities = 14/55 (25%), Positives = 21/55 (38%)
 Frame = -2

Query: 393 C*SGKLLLSAQSNSCLENYVFKFVCCSQ*RAVISHFSSPRIKEAATYCQERWCCY 229
           C +G+         C      + +CC +      H +  R+      CQ RWCCY
Sbjct: 299 CLAGRFSPGTAGRRCHREKNCESICCGR-----GHNTQSRVVTRPCQCQVRWCCY 348


>sp|Q96WV6|YHU2_SCHPO Uncharacterized threonine-rich GPI-anchored
            glycoprotein PJ4664.02 OS=Schizosaccharomyces pombe
            GN=SPBPJ4664.02 PE=2 SV=1
          Length = 3971

 Score = 31.2 bits (69), Expect = 2.6
 Identities = 27/103 (26%), Positives = 49/103 (47%), Gaps = 2/103 (1%)
 Frame = -3

Query: 428  SVLLMLTTPVTSAKAGNSCFRLSQTRVLRTMSLSLSAAHSKEQSSVTFXXXXXXXXXLTV 249
            S ++  +TP+TS+   NS   ++ + V+ T +   S+      +S+T          +T 
Sbjct: 2331 STVVNTSTPITSSSVLNSSTPITSSTVVNTSTPITSSTALNTSTSITSSSVLNSSTPIT- 2389

Query: 248  KRDGAVIVFITSAEINSSCSGNDTPIESS--VNSSGSVFWGSV 126
                + +V  ++   +SS   + TPI SS  VN+S S+   SV
Sbjct: 2390 ---SSTVVNTSTPITSSSVLNSSTPITSSTVVNTSTSITSSSV 2429



 Score = 29.6 bits (65), Expect = 7.6
 Identities = 27/107 (25%), Positives = 51/107 (47%), Gaps = 2/107 (1%)
 Frame = -3

Query: 428  SVLLMLTTPVTSAKAGNSCFRLSQTRVLRTMSLSLSAAHSKEQSSVTFXXXXXXXXXLTV 249
            S ++  +TP+TS+ A N+   ++ + VL + +   S+      +S+T          +T 
Sbjct: 1263 STVVNSSTPITSSTALNTSIPITSSSVLNSSTPITSSTALNTSTSITSSSVLNSSTPIT- 1321

Query: 248  KRDGAVIVFITSAEINSSCSGNDTPIESS--VNSSGSVFWGSVSLTT 114
                + +V  ++   +SS   + TPI SS  VNSS  +   +V  T+
Sbjct: 1322 ---SSTVVNTSTPITSSSVLNSSTPITSSTVVNSSTPITSSTVVNTS 1365


>sp|Q3ED93|Y1946_ARATH Kelch repeat-containing protein At1g19460
           OS=Arabidopsis thaliana GN=At1g19460 PE=4 SV=1
          Length = 416

 Score = 31.2 bits (69), Expect = 2.7
 Identities = 19/39 (48%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
 Frame = +1

Query: 163 EDSIGVSFPLQEELISAEV--IKTITAPSLLTVSSSFFN 273
           +D+  VSFP+  EL  A V  I+    PSL +VSS FFN
Sbjct: 49  KDNRSVSFPIPNELTEACVALIRKCDYPSLSSVSSYFFN 87


>sp|O42280|WNT9A_CHICK Protein Wnt-9a OS=Gallus gallus GN=WNT9A PE=2
           SV=1
          Length = 354

 Score = 29.6 bits (65), Expect = 7.8
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = -2

Query: 324 VCCSQ*RAVISHFSSPRIKEAATYCQERWCCY 229
           +CC +      H +  R+      CQ RWCCY
Sbjct: 311 ICCGR-----GHNTQSRVVTRPCQCQVRWCCY 337


>sp|Q88KY8|STHA_PSEPK Soluble pyridine nucleotide transhydrogenase
           OS=Pseudomonas putida (strain KT2440) GN=sthA PE=3 SV=3
          Length = 464

 Score = 29.6 bits (65), Expect = 7.8
 Identities = 13/21 (61%), Positives = 16/21 (76%)
 Frame = +2

Query: 83  HH*R*INSDTMLSRKHSPRKL 145
           HH R  +SDT+LS  H+PRKL
Sbjct: 158 HHPRVYDSDTILSLSHTPRKL 178


>sp|B0KH90|STHA_PSEPG Soluble pyridine nucleotide transhydrogenase
           OS=Pseudomonas putida (strain GB-1) GN=sthA PE=3 SV=1
          Length = 464

 Score = 29.6 bits (65), Expect = 7.8
 Identities = 13/21 (61%), Positives = 16/21 (76%)
 Frame = +2

Query: 83  HH*R*INSDTMLSRKHSPRKL 145
           HH R  +SDT+LS  H+PRKL
Sbjct: 158 HHPRVYDSDTILSLSHTPRKL 178


>sp|A5W6F5|STHA_PSEP1 Soluble pyridine nucleotide transhydrogenase
           OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=sthA
           PE=3 SV=1
          Length = 464

 Score = 29.6 bits (65), Expect = 7.8
 Identities = 13/21 (61%), Positives = 16/21 (76%)
 Frame = +2

Query: 83  HH*R*INSDTMLSRKHSPRKL 145
           HH R  +SDT+LS  H+PRKL
Sbjct: 158 HHPRVYDSDTILSLSHTPRKL 178


>sp|Q1I7F0|STHA_PSEE4 Soluble pyridine nucleotide transhydrogenase
           OS=Pseudomonas entomophila (strain L48) GN=sthA PE=3
           SV=1
          Length = 464

 Score = 29.6 bits (65), Expect = 7.8
 Identities = 13/21 (61%), Positives = 16/21 (76%)
 Frame = +2

Query: 83  HH*R*INSDTMLSRKHSPRKL 145
           HH R  +SDT+LS  H+PRKL
Sbjct: 158 HHPRVYDSDTILSLSHTPRKL 178
tr_hit_id Q6CN67
Definition tr|Q6CN67|Q6CN67_KLULA KLLA0E14939p OS=Kluyveromyces lactis
Align length 69
Score (bit) 36.6
E-value 0.65
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911485|Adiantum capillus-veneris mRNA, clone:
YMU001_000005_E04.
         (490 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q6CN67|Q6CN67_KLULA KLLA0E14939p OS=Kluyveromyces lactis GN=K...    37   0.65 
tr|B8KME7|B8KME7_9GAMM Conserved repeat domain protein OS=gamma ...    34   4.2  
tr|Q7RL67|Q7RL67_PLAYO Histone acetyltransferase GCN5-related OS...    33   9.3  

>tr|Q6CN67|Q6CN67_KLULA KLLA0E14939p OS=Kluyveromyces lactis
           GN=KLLA0E14939g PE=4 SV=1
          Length = 398

 Score = 36.6 bits (83), Expect = 0.65
 Identities = 25/69 (36%), Positives = 35/69 (50%)
 Frame = -3

Query: 218 TSAEINSSCSGNDTPIESSVNSSGSVFWGSVSLTTLCQS*SNVNGDGKDFHGAMHKIPDD 39
           +SAE  +S S + +   SS +SS S    S S +T   S S ++GD  DF G   +  D 
Sbjct: 87  SSAEEVTSSSSSSSSSSSSSSSSSSSSSSSTSTSTSGSS-SGIDGDLSDFSGPSEEFEDG 145

Query: 38  TLEVELFPS 12
           T+    FPS
Sbjct: 146 TIPCSQFPS 154


>tr|B8KME7|B8KME7_9GAMM Conserved repeat domain protein OS=gamma
           proteobacterium NOR5-3 GN=NOR53_2798 PE=4 SV=1
          Length = 1565

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 22/73 (30%), Positives = 34/73 (46%)
 Frame = +1

Query: 73  SLPSPLTLDQL*HNVVKETLPQKTDPLLLTEDSIGVSFPLQEELISAEVIKTITAPSLLT 252
           ++P+  T   L HN  +  LP            IG   PL  +L ++ +  T+T P+ LT
Sbjct: 667 TVPTTYTQSWLDHNTFRSNLPD-----------IGDGRPLAADLTASVLRATVTGPTQLT 715

Query: 253 VSSSFFNSGRRKV 291
           V+    N+G R V
Sbjct: 716 VTGRIGNAGGRTV 728


>tr|Q7RL67|Q7RL67_PLAYO Histone acetyltransferase GCN5-related
           OS=Plasmodium yoelii yoelii GN=PY02679 PE=4 SV=1
          Length = 1402

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 20/70 (28%), Positives = 29/70 (41%)
 Frame = -3

Query: 248 KRDGAVIVFITSAEINSSCSGNDTPIESSVNSSGSVFWGSVSLTTLCQS*SNVNGDGKDF 69
           K+D   I  I S  INS  + +D+    S NS  +  W +V     CQ   N N   + +
Sbjct: 91  KQDTLSITSINSDSINSDSTNSDSTNSDSTNSDSTNNWENVKSNINCQVIKNKNNHNESY 150

Query: 68  HGAMHKIPDD 39
           +    K   D
Sbjct: 151 NQNFDKTYGD 160