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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP911486
Clone id YMU001_000005_E05
Library
Length 529
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000005_E05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
AGAGATTGATGTAGATGATGTGTTTGTGCCATGTGATGCACTATCAAACCAGATGCTTAA
GAACAAATCAGCAGATCTTGCGCTCGACGATGTGTTGTATTCATTGGATAAGGCAGTGCA
CCAAGGGGTCATGCCGATGGATGCGTATCTTAGGCATGTGCGCACAATTGCTCGTGAACA
ATTCTTTTATAGAGCCACCTCTATGAAGATTGAAGCAATTCAGAGACAAGAACAAATTTC
CAACATAGCAGCAAGGTACACTGTTTGAGATCCGATGGCCAGCGACCGCATTGCCTGAAG
TATGCTTTCTGCAAAACCATTCCTGCTTTTCTGCTTTTGCTTTTGTCTTCTTGCCAAGAA
ATGTGCTGTACATATAAACAAAAAAGGGGGGATTTTGGTGAGCTGTACATACAGACGGAT
ACGATTACAAAAGTCTATGGGGGTCAATGTCCGCAGCTGCACTGGGGCAGCTCAAAGTTC
TTTCATTTTCTGTATGCATAGGCTTGTTAAAGTAGCCATGATGATCACA
■■Homology search results ■■ -
sp_hit_id Q54LJ3
Definition sp|Q54LJ3|TS101_DICDI ESCRT-I complex subunit tsg101 OS=Dictyostelium discoideum
Align length 74
Score (bit) 69.7
E-value 8.0e-12
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911486|Adiantum capillus-veneris mRNA, clone:
YMU001_000005_E05.
         (516 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q54LJ3|TS101_DICDI ESCRT-I complex subunit tsg101 OS=Dictyost...    70   8e-12
sp|Q6IRE4|TS101_RAT Tumor susceptibility gene 101 protein OS=Rat...    52   2e-06
sp|Q61187|TS101_MOUSE Tumor susceptibility gene 101 protein OS=M...    52   2e-06
sp|Q99816|TS101_HUMAN Tumor susceptibility gene 101 protein OS=H...    52   2e-06
sp|P25604|STP22_YEAST Suppressor protein STP22 of temperature-se...    42   0.002
sp|Q7Z992|SST6_SCHPO ESCRT-I complex subunit vps23 OS=Schizosacc...    30   8.8  

>sp|Q54LJ3|TS101_DICDI ESCRT-I complex subunit tsg101
           OS=Dictyostelium discoideum GN=tsg101 PE=3 SV=1
          Length = 478

 Score = 69.7 bits (169), Expect = 8e-12
 Identities = 33/74 (44%), Positives = 51/74 (68%)
 Frame = +1

Query: 1   DDVFVPCDALSNQMLKNKSADLALDDVLYSLDKAVHQGVMPMDAYLRHVRTIAREQFFYR 180
           D +  P D+LS Q+LK  S D  ++D+LY LDKA+H   + ++ YL++VR+++R+QF  R
Sbjct: 379 DQILGPKDSLSKQLLKLVSDDSTIEDLLYYLDKALHSNRISLEEYLKNVRSLSRDQFIIR 438

Query: 181 ATSMKIEAIQRQEQ 222
           AT  K++ I RQ Q
Sbjct: 439 ATVKKVQFIIRQNQ 452


>sp|Q6IRE4|TS101_RAT Tumor susceptibility gene 101 protein OS=Rattus
           norvegicus GN=Tsg101 PE=1 SV=1
          Length = 391

 Score = 51.6 bits (122), Expect = 2e-06
 Identities = 23/65 (35%), Positives = 42/65 (64%)
 Frame = +1

Query: 1   DDVFVPCDALSNQMLKNKSADLALDDVLYSLDKAVHQGVMPMDAYLRHVRTIAREQFFYR 180
           D+V +P   L  Q+L   + + A++D ++ L +A+ +GV+ +D +L+HVR ++R+QF  R
Sbjct: 316 DEVIIPTAPLYKQILNLYAEENAIEDTIFYLGEALRRGVIDLDVFLKHVRLLSRKQFQLR 375

Query: 181 ATSMK 195
           A   K
Sbjct: 376 ALMQK 380


>sp|Q61187|TS101_MOUSE Tumor susceptibility gene 101 protein OS=Mus
           musculus GN=Tsg101 PE=1 SV=2
          Length = 391

 Score = 51.6 bits (122), Expect = 2e-06
 Identities = 23/65 (35%), Positives = 42/65 (64%)
 Frame = +1

Query: 1   DDVFVPCDALSNQMLKNKSADLALDDVLYSLDKAVHQGVMPMDAYLRHVRTIAREQFFYR 180
           D+V +P   L  Q+L   + + A++D ++ L +A+ +GV+ +D +L+HVR ++R+QF  R
Sbjct: 316 DEVIIPTAPLYKQILNLYAEENAIEDTIFYLGEALRRGVIDLDVFLKHVRLLSRKQFQLR 375

Query: 181 ATSMK 195
           A   K
Sbjct: 376 ALMQK 380


>sp|Q99816|TS101_HUMAN Tumor susceptibility gene 101 protein OS=Homo
           sapiens GN=TSG101 PE=1 SV=2
          Length = 390

 Score = 51.6 bits (122), Expect = 2e-06
 Identities = 23/65 (35%), Positives = 42/65 (64%)
 Frame = +1

Query: 1   DDVFVPCDALSNQMLKNKSADLALDDVLYSLDKAVHQGVMPMDAYLRHVRTIAREQFFYR 180
           D+V +P   L  Q+L   + + A++D ++ L +A+ +GV+ +D +L+HVR ++R+QF  R
Sbjct: 315 DEVIIPTAPLYKQILNLYAEENAIEDTIFYLGEALRRGVIDLDVFLKHVRLLSRKQFQLR 374

Query: 181 ATSMK 195
           A   K
Sbjct: 375 ALMQK 379


>sp|P25604|STP22_YEAST Suppressor protein STP22 of
           temperature-sensitive alpha-factor receptor and arginine
           permease OS=Saccharomyces cerevisiae GN=STP22 PE=1 SV=3
          Length = 385

 Score = 41.6 bits (96), Expect = 0.002
 Identities = 17/49 (34%), Positives = 30/49 (61%)
 Frame = +1

Query: 34  NQMLKNKSADLALDDVLYSLDKAVHQGVMPMDAYLRHVRTIAREQFFYR 180
           NQ+    + D AL D +  L + +H+G +P+D +++  R +AR+QF  R
Sbjct: 326 NQLYNLVAQDYALTDTIECLSRMLHRGTIPLDTFVKQGRELARQQFLVR 374


>sp|Q7Z992|SST6_SCHPO ESCRT-I complex subunit vps23
           OS=Schizosaccharomyces pombe GN=sst6 PE=2 SV=2
          Length = 487

 Score = 29.6 bits (65), Expect = 8.8
 Identities = 15/44 (34%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
 Frame = +1

Query: 52  KSADLALDDVLYSLDKAVH-QGVMPMDAYLRHVRTIAREQFFYR 180
           K  D  LD+ + +L++A+H + +MP  ++L+ ++ +AR+QF  R
Sbjct: 438 KRKDEKLDEGIRALNQALHHESIMPA-SWLKGIKLLARQQFLIR 480
tr_hit_id A9P2J9
Definition tr|A9P2J9|A9P2J9_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 81
Score (bit) 108.0
E-value 2.0e-22
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911486|Adiantum capillus-veneris mRNA, clone:
YMU001_000005_E05.
         (516 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9P2J9|A9P2J9_PICSI Putative uncharacterized protein OS=Picea...   108   2e-22
tr|A9S7R6|A9S7R6_PHYPA Predicted protein OS=Physcomitrella paten...    98   2e-19
tr|A9TJ74|A9TJ74_PHYPA Predicted protein OS=Physcomitrella paten...    95   2e-18
tr|A7QHJ8|A7QHJ8_VITVI Chromosome chr5 scaffold_98, whole genome...    92   2e-17
tr|A9PJF9|A9PJF9_POPJC Putative uncharacterized protein OS=Popul...    90   6e-17
tr|Q9FFY6|Q9FFY6_ARATH Similarity to nascent polypeptide associa...    89   2e-16
tr|Q6ESB7|Q6ESB7_ORYSJ Os02g0833300 protein OS=Oryza sativa subs...    87   4e-16
tr|B8AFJ3|B8AFJ3_ORYSI Putative uncharacterized protein OS=Oryza...    87   4e-16
tr|A3AD24|A3AD24_ORYSJ Putative uncharacterized protein OS=Oryza...    87   4e-16
tr|Q9LHG8|Q9LHG8_ARATH And human tumor susceptibility gene-like ...    86   1e-15
tr|A7PKJ3|A7PKJ3_VITVI Chromosome chr15 scaffold_19, whole genom...    76   1e-12
tr|A8IU80|A8IU80_CHLRE Subunit of the ESCRT-I complex OS=Chlamyd...    58   2e-07
tr|A9V9P6|A9V9P6_MONBE Predicted protein OS=Monosiga brevicollis...    57   7e-07
tr|O76258|O76258_CAEEL Tumor susceptibility gene homolog protein...    56   1e-06
tr|Q6IQ70|Q6IQ70_DANRE Tumor susceptibility gene 101 OS=Danio re...    53   1e-05
tr|B5YNX5|B5YNX5_THAPS Predicted protein OS=Thalassiosira pseudo...    53   1e-05
tr|Q6P2Z8|Q6P2Z8_XENTR Tumor susceptibility gene 101 OS=Xenopus ...    52   2e-05
tr|Q6NUD5|Q6NUD5_XENLA MGC81040 protein OS=Xenopus laevis GN=MGC...    52   2e-05
tr|A4RTQ7|A4RTQ7_OSTLU Predicted protein (Fragment) OS=Ostreococ...    52   2e-05
tr|Q9I8G8|Q9I8G8_CHEMY Tumor susceptibility protein 101 OS=Chelo...    52   2e-05
tr|Q4SAD8|Q4SAD8_TETNG Chromosome 13 SCAF14688, whole genome sho...    52   2e-05
tr|Q3UK08|Q3UK08_MOUSE Putative uncharacterized protein OS=Mus m...    52   2e-05
tr|Q3UCW0|Q3UCW0_MOUSE Putative uncharacterized protein OS=Mus m...    52   2e-05
tr|Q4R5D6|Q4R5D6_MACFA Brain cDNA, clone: QnpA-17019, similar to...    52   2e-05
tr|A3KN51|A3KN51_BOVIN TSG101 protein OS=Bos taurus GN=TSG101 PE...    52   2e-05
tr|B7GBA3|B7GBA3_PHATR Predicted protein OS=Phaeodactylum tricor...    51   3e-05
tr|A8NSG3|A8NSG3_BRUMA Putative uncharacterized protein OS=Brugi...    51   4e-05
tr|Q09HC4|Q09HC4_MACMU Tumor susceptibility protein 101 (Fragmen...    50   5e-05
tr|Q09H90|Q09H90_MACMU Tumor susceptibility protein 101 (Fragmen...    50   5e-05
tr|Q4PAN2|Q4PAN2_USTMA Putative uncharacterized protein OS=Ustil...    50   7e-05

>tr|A9P2J9|A9P2J9_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 161

 Score =  108 bits (269), Expect = 2e-22
 Identities = 49/81 (60%), Positives = 68/81 (83%)
 Frame = +1

Query: 1   DDVFVPCDALSNQMLKNKSADLALDDVLYSLDKAVHQGVMPMDAYLRHVRTIAREQFFYR 180
           DDVF PCDALS QML+  +ADLA++D+LYSLDKA  +G +P+DAYL++VR ++REQFF+R
Sbjct: 75  DDVFEPCDALSRQMLECTAADLAIEDILYSLDKAAQEGSIPVDAYLKNVRALSREQFFHR 134

Query: 181 ATSMKIEAIQRQEQISNIAAR 243
           AT+ K+ A Q Q Q++++AAR
Sbjct: 135 ATAAKVRAAQMQSQVASMAAR 155


>tr|A9S7R6|A9S7R6_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_182103 PE=4 SV=1
          Length = 369

 Score = 98.2 bits (243), Expect = 2e-19
 Identities = 44/81 (54%), Positives = 64/81 (79%)
 Frame = +1

Query: 1   DDVFVPCDALSNQMLKNKSADLALDDVLYSLDKAVHQGVMPMDAYLRHVRTIAREQFFYR 180
           DDVF P D LS Q+L+++S+DLA++DVLY++DK     V+P++AYL+HVR +AREQFF+R
Sbjct: 284 DDVFEPADTLSKQLLESQSSDLAIEDVLYAIDKGAQDLVVPVEAYLKHVRVLAREQFFHR 343

Query: 181 ATSMKIEAIQRQEQISNIAAR 243
           AT+ KI  +Q   Q+ N+A+R
Sbjct: 344 ATAQKIRQMQVSAQVDNMASR 364


>tr|A9TJ74|A9TJ74_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_170379 PE=4 SV=1
          Length = 409

 Score = 94.7 bits (234), Expect = 2e-18
 Identities = 42/81 (51%), Positives = 62/81 (76%)
 Frame = +1

Query: 1   DDVFVPCDALSNQMLKNKSADLALDDVLYSLDKAVHQGVMPMDAYLRHVRTIAREQFFYR 180
           DDVF P D LS Q+L+ +S+DLA++D+LY++DK     V+P++AYL+HVR +AREQFF+R
Sbjct: 324 DDVFEPVDTLSKQLLECQSSDLAIEDILYAIDKGAQDLVIPVEAYLKHVRVLAREQFFHR 383

Query: 181 ATSMKIEAIQRQEQISNIAAR 243
           AT+ K+  +Q   Q+ N+A R
Sbjct: 384 ATAQKLRQMQVSTQVENMAVR 404


>tr|A7QHJ8|A7QHJ8_VITVI Chromosome chr5 scaffold_98, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00038814001
           PE=4 SV=1
          Length = 425

 Score = 91.7 bits (226), Expect = 2e-17
 Identities = 42/81 (51%), Positives = 61/81 (75%)
 Frame = +1

Query: 1   DDVFVPCDALSNQMLKNKSADLALDDVLYSLDKAVHQGVMPMDAYLRHVRTIAREQFFYR 180
           D+ F PCDALS QML   S+DL+++D +Y+LDKAV +G +  D YL++VR ++REQFF+R
Sbjct: 338 DNAFEPCDALSKQMLDCTSSDLSIEDTIYALDKAVQEGSISFDQYLKNVRLLSREQFFHR 397

Query: 181 ATSMKIEAIQRQEQISNIAAR 243
           A   K+ A Q Q Q++++AAR
Sbjct: 398 AMCAKLRAAQMQAQVASMAAR 418


>tr|A9PJF9|A9PJF9_POPJC Putative uncharacterized protein OS=Populus
           jackii PE=2 SV=1
          Length = 403

 Score = 90.1 bits (222), Expect = 6e-17
 Identities = 44/81 (54%), Positives = 60/81 (74%)
 Frame = +1

Query: 1   DDVFVPCDALSNQMLKNKSADLALDDVLYSLDKAVHQGVMPMDAYLRHVRTIAREQFFYR 180
           D  F   D LS QML+  +AD+A++DV+YSLDKAV +G MP   YLR+VR ++REQFF R
Sbjct: 317 DKAFECVDVLSKQMLECTAADMAIEDVVYSLDKAVQEGAMPFVQYLRNVRLLSREQFFNR 376

Query: 181 ATSMKIEAIQRQEQISNIAAR 243
           AT+ K+ A Q Q Q++++AAR
Sbjct: 377 ATAAKVRAAQMQAQVASMAAR 397


>tr|Q9FFY6|Q9FFY6_ARATH Similarity to nascent polypeptide associated
           complex alpha chain OS=Arabidopsis thaliana GN=At5g13860
           PE=4 SV=1
          Length = 368

 Score = 88.6 bits (218), Expect = 2e-16
 Identities = 42/81 (51%), Positives = 60/81 (74%)
 Frame = +1

Query: 1   DDVFVPCDALSNQMLKNKSADLALDDVLYSLDKAVHQGVMPMDAYLRHVRTIAREQFFYR 180
           DD F   D+LS QML+  + DLA++DV+YS+DK+   G +P D YLR+VR ++REQFF+R
Sbjct: 285 DDSFECIDSLSKQMLECTALDLAIEDVVYSMDKSFRDGSLPFDQYLRNVRLLSREQFFHR 344

Query: 181 ATSMKIEAIQRQEQISNIAAR 243
           AT+ K+  IQ   Q+++IAAR
Sbjct: 345 ATAEKVREIQMDAQVASIAAR 365


>tr|Q6ESB7|Q6ESB7_ORYSJ Os02g0833300 protein OS=Oryza sativa subsp.
           japonica GN=OJ1282_E10.10 PE=2 SV=1
          Length = 402

 Score = 87.4 bits (215), Expect = 4e-16
 Identities = 41/81 (50%), Positives = 56/81 (69%)
 Frame = +1

Query: 1   DDVFVPCDALSNQMLKNKSADLALDDVLYSLDKAVHQGVMPMDAYLRHVRTIAREQFFYR 180
           D+     D LS QML+  +ADLAL+D +Y+LDKA+ +G +P D YLR VR +AREQFF R
Sbjct: 316 DEAIETADVLSKQMLECTAADLALEDTIYALDKAIQEGSVPFDGYLRSVRALAREQFFQR 375

Query: 181 ATSMKIEAIQRQEQISNIAAR 243
             S K+   Q+Q Q++ +AAR
Sbjct: 376 VLSTKVNKAQQQAQVARMAAR 396


>tr|B8AFJ3|B8AFJ3_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_09582 PE=4 SV=1
          Length = 487

 Score = 87.4 bits (215), Expect = 4e-16
 Identities = 41/81 (50%), Positives = 56/81 (69%)
 Frame = +1

Query: 1   DDVFVPCDALSNQMLKNKSADLALDDVLYSLDKAVHQGVMPMDAYLRHVRTIAREQFFYR 180
           D+     D LS QML+  +ADLAL+D +Y+LDKA+ +G +P D YLR VR +AREQFF R
Sbjct: 316 DEAIETADVLSKQMLECTAADLALEDTIYALDKAIQEGSVPFDGYLRSVRALAREQFFQR 375

Query: 181 ATSMKIEAIQRQEQISNIAAR 243
             S K+   Q+Q Q++ +AAR
Sbjct: 376 VLSTKVNKAQQQAQVARMAAR 396


>tr|A3AD24|A3AD24_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_008696 PE=4 SV=1
          Length = 261

 Score = 87.4 bits (215), Expect = 4e-16
 Identities = 41/81 (50%), Positives = 56/81 (69%)
 Frame = +1

Query: 1   DDVFVPCDALSNQMLKNKSADLALDDVLYSLDKAVHQGVMPMDAYLRHVRTIAREQFFYR 180
           D+     D LS QML+  +ADLAL+D +Y+LDKA+ +G +P D YLR VR +AREQFF R
Sbjct: 175 DEAIETADVLSKQMLECTAADLALEDTIYALDKAIQEGSVPFDGYLRSVRALAREQFFQR 234

Query: 181 ATSMKIEAIQRQEQISNIAAR 243
             S K+   Q+Q Q++ +AAR
Sbjct: 235 VLSTKVNKAQQQAQVARMAAR 255


>tr|Q9LHG8|Q9LHG8_ARATH And human tumor susceptibility gene-like
           protein (Putative uncharacterized protein At3g12400)
           (Putative uncharacterized protein) (Putative
           uncharacterized protein T2E22.28) OS=Arabidopsis
           thaliana GN=T2E22.28 PE=2 SV=1
          Length = 398

 Score = 85.5 bits (210), Expect = 1e-15
 Identities = 41/81 (50%), Positives = 57/81 (70%)
 Frame = +1

Query: 1   DDVFVPCDALSNQMLKNKSADLALDDVLYSLDKAVHQGVMPMDAYLRHVRTIAREQFFYR 180
           D+ F   D LS QML+  + DLA++D +YSLDK+   GV+P D YLR+VR ++REQFF+R
Sbjct: 315 DNAFECGDTLSKQMLECTALDLAIEDAIYSLDKSFQDGVVPFDQYLRNVRLLSREQFFHR 374

Query: 181 ATSMKIEAIQRQEQISNIAAR 243
           AT  K+ A Q + Q++ IA R
Sbjct: 375 ATGSKVRAAQMEVQVAAIAGR 395