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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP911490
Clone id YMU001_000005_E11
Library
Length 550
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000005_E11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GATAGACAATGATGGCCAACAGTGGATACAAGTCTTGGGGAAATCCTCACTGCACGATGT
ACTTGCGAGAAAAGACCATGTTATTCCTGGAATACCTGTGTTTTATGTTCTATCGAAGGG
CTCCGATTTTTATGAAGAGTTTCTTTCTGGACACTGGTGAAAGTTCAGCGTAGGATCTTT
TGTCTGGTTGAGCTTTCTTGAGCTCAAGGTATGCAGTAAGTTGGAAAGTTCAGAAGTCTC
AAAGAACAGCATCTAAGAGTTAATGTCTGCTAGGGTTCAACTGTAGCTTGGCAGACCATT
GAAAGGCCTGCAAGAAACACTCTCGACGAATGATTGTTATGTGAATAGTGATACCTTACA
TACGACTACAACTTGCCAAGCAAGAGTCCTAGTACATAGAGAGGTTGTATGCCTTTTCAA
CGTTTTTTTACCAGCATCATGTCGTATTAGCTTGTGCATTCATACAAAGTAGAGATGCTG
CTAGTGTACTGCTTTCCATGTGTGCAACTCGTGTAGCGTCTGTGCAATCTTTTCTTGCAG
GCTTGCAAGA
■■Homology search results ■■ -
sp_hit_id Q54M20
Definition sp|Q54M20|TTC4_DICDI Tetratricopeptide repeat protein 4 homolog OS=Dictyostelium discoideum
Align length 43
Score (bit) 43.5
E-value 0.0007
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911490|Adiantum capillus-veneris mRNA, clone:
YMU001_000005_E11.
         (550 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q54M20|TTC4_DICDI Tetratricopeptide repeat protein 4 homolog ...    44   7e-04

>sp|Q54M20|TTC4_DICDI Tetratricopeptide repeat protein 4 homolog
           OS=Dictyostelium discoideum GN=ttc4 PE=3 SV=1
          Length = 397

 Score = 43.5 bits (101), Expect = 7e-04
 Identities = 16/43 (37%), Positives = 32/43 (74%)
 Frame = +2

Query: 17  QQWIQVLGKSSLHDVLARKDHVIPGIPVFYVLSKGSDFYEEFL 145
           ++WI+V   + +  V++   ++IP IP+FY++S+G+ FY++FL
Sbjct: 351 KKWIRVKHTTDIAKVISHPTYIIPEIPIFYIVSRGNLFYKKFL 393
tr_hit_id A7Q1I4
Definition tr|A7Q1I4|A7Q1I4_VITVI Chromosome chr7 scaffold_44, whole genome shotgun sequence OS=Vitis vinifera
Align length 46
Score (bit) 57.0
E-value 6.0e-07
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911490|Adiantum capillus-veneris mRNA, clone:
YMU001_000005_E11.
         (550 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7Q1I4|A7Q1I4_VITVI Chromosome chr7 scaffold_44, whole genome...    57   6e-07
tr|Q75LL1|Q75LL1_ORYSJ Expressed protein OS=Oryza sativa subsp. ...    54   5e-06
tr|Q10CT3|Q10CT3_ORYSJ TPR Domain containing protein, expressed ...    54   5e-06
tr|B8AJW6|B8AJW6_ORYSI Putative uncharacterized protein OS=Oryza...    54   5e-06
tr|B6T3Y3|B6T3Y3_MAIZE Tetratricopeptide repeat domain 4 OS=Zea ...    52   3e-05
tr|B4G106|B4G106_MAIZE Putative uncharacterized protein OS=Zea m...    52   3e-05
tr|B4FCM6|B4FCM6_MAIZE Putative uncharacterized protein OS=Zea m...    52   3e-05
tr|Q940R2|Q940R2_ARATH At1g04130/F20D22_10 OS=Arabidopsis thalia...    51   5e-05
tr|A4RTH0|A4RTH0_OSTLU Predicted protein OS=Ostreococcus lucimar...    44   0.004
tr|Q01DS3|Q01DS3_OSTTA Hsp90 co-chaperone CNS1 (Contains TPR rep...    43   0.010
tr|A2E6C4|A2E6C4_TRIVA Putative uncharacterized protein OS=Trich...    43   0.010
tr|A7T0R1|A7T0R1_NEMVE Predicted protein OS=Nematostella vectens...    33   7.7  

>tr|A7Q1I4|A7Q1I4_VITVI Chromosome chr7 scaffold_44, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00028478001
           PE=4 SV=1
          Length = 364

 Score = 57.0 bits (136), Expect = 6e-07
 Identities = 25/46 (54%), Positives = 34/46 (73%)
 Frame = +2

Query: 20  QWIQVLGKSSLHDVLARKDHVIPGIPVFYVLSKGSDFYEEFLSGHW 157
           +W++V  K +L+DVL   + +IPGIPVFYV+SK S FY+EF  G W
Sbjct: 315 KWVKVNEKRTLNDVLKEPNLMIPGIPVFYVVSKRSSFYKEFRDGKW 360


>tr|Q75LL1|Q75LL1_ORYSJ Expressed protein OS=Oryza sativa subsp.
           japonica GN=OSJNBa0047E24.26 PE=4 SV=1
          Length = 374

 Score = 53.9 bits (128), Expect = 5e-06
 Identities = 23/51 (45%), Positives = 33/51 (64%)
 Frame = +2

Query: 5   DNDGQQWIQVLGKSSLHDVLARKDHVIPGIPVFYVLSKGSDFYEEFLSGHW 157
           D    +WI V    +L +VL  KD +IP IPVF+V+S+ S FY +F +G+W
Sbjct: 321 DKGSVKWINVKEGKTLQEVLQHKDFIIPAIPVFFVVSRKSTFYRKFKAGNW 371


>tr|Q10CT3|Q10CT3_ORYSJ TPR Domain containing protein, expressed
           OS=Oryza sativa subsp. japonica GN=LOC_Os03g53910 PE=4
           SV=1
          Length = 336

 Score = 53.9 bits (128), Expect = 5e-06
 Identities = 23/51 (45%), Positives = 33/51 (64%)
 Frame = +2

Query: 5   DNDGQQWIQVLGKSSLHDVLARKDHVIPGIPVFYVLSKGSDFYEEFLSGHW 157
           D    +WI V    +L +VL  KD +IP IPVF+V+S+ S FY +F +G+W
Sbjct: 283 DKGSVKWINVKEGKTLQEVLQHKDFIIPAIPVFFVVSRKSTFYRKFKAGNW 333


>tr|B8AJW6|B8AJW6_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_13520 PE=4 SV=1
          Length = 336

 Score = 53.9 bits (128), Expect = 5e-06
 Identities = 23/51 (45%), Positives = 33/51 (64%)
 Frame = +2

Query: 5   DNDGQQWIQVLGKSSLHDVLARKDHVIPGIPVFYVLSKGSDFYEEFLSGHW 157
           D    +WI V    +L +VL  KD +IP IPVF+V+S+ S FY +F +G+W
Sbjct: 283 DKGSVKWINVKEGKTLQEVLQHKDFIIPAIPVFFVVSRKSTFYRKFKAGNW 333


>tr|B6T3Y3|B6T3Y3_MAIZE Tetratricopeptide repeat domain 4 OS=Zea
           mays PE=2 SV=1
          Length = 373

 Score = 51.6 bits (122), Expect = 3e-05
 Identities = 20/50 (40%), Positives = 35/50 (70%)
 Frame = +2

Query: 8   NDGQQWIQVLGKSSLHDVLARKDHVIPGIPVFYVLSKGSDFYEEFLSGHW 157
           +   +WI+V    +L +VL  K +++P IPVF+V+S+ S FY++F +G+W
Sbjct: 321 DSSSKWIKVKEGKTLQEVLQDKGYIVPAIPVFFVVSRKSTFYKDFKAGNW 370


>tr|B4G106|B4G106_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 191

 Score = 51.6 bits (122), Expect = 3e-05
 Identities = 20/50 (40%), Positives = 35/50 (70%)
 Frame = +2

Query: 8   NDGQQWIQVLGKSSLHDVLARKDHVIPGIPVFYVLSKGSDFYEEFLSGHW 157
           +   +WI+V    +L +VL  K +++P IPVF+V+S+ S FY++F +G+W
Sbjct: 139 DSSSKWIKVKEGKTLQEVLQDKGYIVPAIPVFFVVSRKSTFYKDFKAGNW 188


>tr|B4FCM6|B4FCM6_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 129

 Score = 51.6 bits (122), Expect = 3e-05
 Identities = 20/50 (40%), Positives = 35/50 (70%)
 Frame = +2

Query: 8   NDGQQWIQVLGKSSLHDVLARKDHVIPGIPVFYVLSKGSDFYEEFLSGHW 157
           +   +WI+V    +L +VL  K +++P IPVF+V+S+ S FY++F +G+W
Sbjct: 77  DSSSKWIKVKEGKTLQEVLQDKGYIVPAIPVFFVVSRKSTFYKDFKAGNW 126


>tr|Q940R2|Q940R2_ARATH At1g04130/F20D22_10 OS=Arabidopsis thaliana
           PE=2 SV=1
          Length = 263

 Score = 50.8 bits (120), Expect = 5e-05
 Identities = 22/44 (50%), Positives = 31/44 (70%)
 Frame = +2

Query: 26  IQVLGKSSLHDVLARKDHVIPGIPVFYVLSKGSDFYEEFLSGHW 157
           ++V  + +LHDVL     VIP IPVFY++SK S FY++F +G W
Sbjct: 216 VKVNERRTLHDVLKEPKFVIPEIPVFYIVSKRSKFYKDFTAGKW 259


>tr|A4RTH0|A4RTH0_OSTLU Predicted protein OS=Ostreococcus
           lucimarinus (strain CCE9901) GN=OSTLU_29879 PE=4 SV=1
          Length = 397

 Score = 44.3 bits (103), Expect = 0.004
 Identities = 20/52 (38%), Positives = 32/52 (61%)
 Frame = +2

Query: 2   IDNDGQQWIQVLGKSSLHDVLARKDHVIPGIPVFYVLSKGSDFYEEFLSGHW 157
           +D+  Q    +  K+ L D+   K+ V+ G PVFYV++KG++F + FL G W
Sbjct: 344 VDSRDQFMRSLNEKTKLGDLFKDKECVLAGHPVFYVIAKGTEFRQRFLDGEW 395


>tr|Q01DS3|Q01DS3_OSTTA Hsp90 co-chaperone CNS1 (Contains TPR
           repeats) (ISS) OS=Ostreococcus tauri GN=Ot02g06550 PE=4
           SV=1
          Length = 391

 Score = 43.1 bits (100), Expect = 0.010
 Identities = 18/52 (34%), Positives = 32/52 (61%)
 Frame = +2

Query: 2   IDNDGQQWIQVLGKSSLHDVLARKDHVIPGIPVFYVLSKGSDFYEEFLSGHW 157
           +D+  Q   ++   + L D+    D +I G PVFY+++KG++F ++FL G W
Sbjct: 338 VDSRDQFMRKLDENTKLGDLFRDDDFIIAGHPVFYIIAKGTEFRQQFLDGEW 389