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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP911494
Clone id YMU001_000005_F03
Library
Length 430
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000005_F03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TTTTTTTTCACTTCATTTAAGGTTTTGTTCGTCTTTAATAATACCTCCTCAAAGCTCTCT
GGCCCATTGCAAACGTAGTGGACGCGTTCAAACGAGAGACGTAAAATCTACCATGATATT
TATGACCATAATAAGAGTCCCTCAATAGACGTGTCACATGAAACTAACATCCTGAAGAGG
GCCATGACCTGCTCAGCCACGCCACTTGCCAAACCAATATTGGAGCAAAAAACTGCCCCG
CAACCCACCAAGCTAAAAATACAGCTCTAGCATCCCTTTGGGGCCCAGCTAACTATCGCA
AAGAAAACGCGACTCCAATTTCCAACGCACCTGCTCAATTAAGAGAAAGCCCCTACTTGA
GATCTACGTCGCCCTGCTTGAACTTGAGAAGGAAGAGCATGCGCAATATTTGCTGGAGGC
GTTGGGGGTA
■■Homology search results ■■ -
sp_hit_id O15027
Definition sp|O15027|SC16A_HUMAN Protein transport protein Sec16A OS=Homo sapiens
Align length 68
Score (bit) 30.4
E-value 3.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911494|Adiantum capillus-veneris mRNA, clone:
YMU001_000005_F03.
         (430 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O15027|SC16A_HUMAN Protein transport protein Sec16A OS=Homo s...    30   3.1  
sp|A2R4T4|SEC16_ASPNC COPII coat assembly protein sec16 OS=Asper...    30   4.1  
sp|Q09FU9|CEMA_NANDO Chloroplast envelope membrane protein OS=Na...    30   5.5  
sp|Q5M9H0|ANKS3_RAT Ankyrin repeat and SAM domain-containing pro...    30   5.5  
sp|Q6ZW76|ANKS3_HUMAN Ankyrin repeat and SAM domain-containing p...    30   5.5  
sp|Q2NSC1|ZIPA_SODGM Cell division protein zipA homolog OS=Sodal...    29   7.0  
sp|Q9CZK6|ANKS3_MOUSE Ankyrin repeat and SAM domain-containing p...    29   7.1  
sp|P01771|HV310_HUMAN Ig heavy chain V-III region HIL OS=Homo sa...    29   9.3  

>sp|O15027|SC16A_HUMAN Protein transport protein Sec16A OS=Homo
           sapiens GN=SEC16A PE=1 SV=3
          Length = 2179

 Score = 30.4 bits (67), Expect = 3.1
 Identities = 15/68 (22%), Positives = 28/68 (41%)
 Frame = +3

Query: 171 PEEGHDLLSHATCQTNIGAKNCPATHQAKNTALASLWGPANYRKENATPISNAPAQLRES 350
           P +G D +SH    +++   + P +   +N  + + W     R+       + PA    +
Sbjct: 98  PSDGRDEVSHLQSGSHLANNSDPESTFRQNPRIVNHWASPELRQNPGVKNEHRPASALVN 157

Query: 351 PYLRSTSP 374
           P  R  SP
Sbjct: 158 PLARGDSP 165


>sp|A2R4T4|SEC16_ASPNC COPII coat assembly protein sec16
           OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513)
           GN=sec16 PE=3 SV=2
          Length = 1914

 Score = 30.0 bits (66), Expect = 4.1
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +3

Query: 267 LASLWGPANYRKENATPISNAPAQLRESPYLRSTS 371
           +A++W PA    +NATP+   PA L     + +T+
Sbjct: 6   VAAVWNPALRSDDNATPVPTGPASLEIDTSIEATT 40


>sp|Q09FU9|CEMA_NANDO Chloroplast envelope membrane protein
           OS=Nandina domestica GN=cemA PE=3 SV=1
          Length = 229

 Score = 29.6 bits (65), Expect = 5.5
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -1

Query: 271 ARAVFLAWWVAGQFFAPILVWQVAWLSRSWPSS 173
           A  VFL WW++  F   +  W + W + S P +
Sbjct: 14  ASIVFLPWWISFSFNKSLESWVIHWWNTSQPEA 46


>sp|Q5M9H0|ANKS3_RAT Ankyrin repeat and SAM domain-containing
           protein 3 OS=Rattus norvegicus GN=Anks3 PE=2 SV=1
          Length = 663

 Score = 29.6 bits (65), Expect = 5.5
 Identities = 19/57 (33%), Positives = 30/57 (52%)
 Frame = -1

Query: 418 LQQILRMLFLLKFKQGDVDLK*GLSLN*AGALEIGVAFSLR*LAGPQRDARAVFLAW 248
           L+QI  + +L  F++ DVDL+  L+L  +   EIG+      L GP+R   +    W
Sbjct: 433 LEQIGCLKYLQVFEEQDVDLRIFLTLTESDLKEIGIT-----LFGPKRKMTSAIARW 484


>sp|Q6ZW76|ANKS3_HUMAN Ankyrin repeat and SAM domain-containing
           protein 3 OS=Homo sapiens GN=ANKS3 PE=1 SV=1
          Length = 656

 Score = 29.6 bits (65), Expect = 5.5
 Identities = 19/57 (33%), Positives = 30/57 (52%)
 Frame = -1

Query: 418 LQQILRMLFLLKFKQGDVDLK*GLSLN*AGALEIGVAFSLR*LAGPQRDARAVFLAW 248
           L+QI  + +L  F++ DVDL+  L+L  +   EIG+      L GP+R   +    W
Sbjct: 434 LEQIGCLKYLQVFEEQDVDLRIFLTLTESDLKEIGIT-----LFGPKRKMTSAIARW 485


>sp|Q2NSC1|ZIPA_SODGM Cell division protein zipA homolog OS=Sodalis
           glossinidius (strain morsitans) GN=zipA PE=3 SV=1
          Length = 329

 Score = 29.3 bits (64), Expect = 7.0
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 315 PISNAPAQLRESPYLRSTSPCLNLRRK 395
           P+SNAP   RE P +RS  P +  R +
Sbjct: 106 PVSNAPRAHREPPQIRSAEPAMPAREQ 132


>sp|Q9CZK6|ANKS3_MOUSE Ankyrin repeat and SAM domain-containing
           protein 3 OS=Mus musculus GN=Anks3 PE=2 SV=2
          Length = 655

 Score = 29.3 bits (64), Expect = 7.1
 Identities = 18/57 (31%), Positives = 30/57 (52%)
 Frame = -1

Query: 418 LQQILRMLFLLKFKQGDVDLK*GLSLN*AGALEIGVAFSLR*LAGPQRDARAVFLAW 248
           L+QI  + +L  F++ D+DL+  L+L  +   EIG+      L GP+R   +    W
Sbjct: 433 LEQIGCLKYLQVFEEQDIDLRIFLTLTESDLKEIGIT-----LFGPKRKMTSAIARW 484


>sp|P01771|HV310_HUMAN Ig heavy chain V-III region HIL OS=Homo
           sapiens PE=1 SV=1
          Length = 121

 Score = 28.9 bits (63), Expect = 9.3
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -1

Query: 136 SYYGHKYHGRFYVSRLNASTTFAMGQRALR 47
           +YYG    GRF +SR N+  T  M   +LR
Sbjct: 58  TYYGDSVKGRFTISRDNSKRTLYMZMNSLR 87
tr_hit_id A7VM42
Definition tr|A7VM42|A7VM42_MARPO Receptor-like kinase OS=Marchantia polymorpha
Align length 49
Score (bit) 37.7
E-value 0.29
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911494|Adiantum capillus-veneris mRNA, clone:
YMU001_000005_F03.
         (430 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7VM42|A7VM42_MARPO Receptor-like kinase OS=Marchantia polymo...    38   0.29 
tr|B4NJE9|B4NJE9_DROWI GK14401 OS=Drosophila willistoni GN=GK144...    37   0.38 
tr|A2YIQ4|A2YIQ4_ORYSI Putative uncharacterized protein OS=Oryza...    34   4.2  
tr|Q75JS9|Q75JS9_DICDI Similar to Homo sapiens (Human). Tenascin...    33   9.4  
tr|Q559R8|Q559R8_DICDI Putative uncharacterized protein OS=Dicty...    33   9.4  

>tr|A7VM42|A7VM42_MARPO Receptor-like kinase OS=Marchantia
           polymorpha GN=MpRLK26 PE=2 SV=1
          Length = 749

 Score = 37.7 bits (86), Expect = 0.29
 Identities = 18/49 (36%), Positives = 26/49 (53%)
 Frame = +3

Query: 279 WGPANYRKENATPISNAPAQLRESPYLRSTSPCLNLRRKSMRNICWRRW 425
           W P+N RK   +P+S++  + R S   R   PCL L     +N+  RRW
Sbjct: 312 WSPSNARKSLLSPLSSSSEEARHSVSERQQKPCLTL----WKNMSMRRW 356


>tr|B4NJE9|B4NJE9_DROWI GK14401 OS=Drosophila willistoni GN=GK14401
            PE=4 SV=1
          Length = 2012

 Score = 37.4 bits (85), Expect = 0.38
 Identities = 29/98 (29%), Positives = 47/98 (47%), Gaps = 6/98 (6%)
 Frame = +1

Query: 82   TRSNERRKIYHDIYDHNKSPSIDVSHETNILKRAMTCSATPLAKPILEQKTAPQPTK--- 252
            +RS E+R   H    +N S   D  H+ + +   +  S++PL K ++E+KT   PTK   
Sbjct: 1504 SRSLEKRHRRHP--HNNDSEKADGKHDESAIPSPLAASSSPLPKKVIEKKTEETPTKPLP 1561

Query: 253  ---LKIQL*HPFGAQLTIAKKTRLQFPTHLLN*EKAPT 357
               L  Q+     ++ T+ +   L+ PT      KAPT
Sbjct: 1562 TYNLIDQI---LESEKTVEQAANLKLPTAKQPNLKAPT 1596


>tr|A2YIQ4|A2YIQ4_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_25105 PE=4 SV=1
          Length = 290

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 20/77 (25%), Positives = 34/77 (44%)
 Frame = +3

Query: 195 SHATCQTNIGAKNCPATHQAKNTALASLWGPANYRKENATPISNAPAQLRESPYLRSTSP 374
           +H + +T+  A+ C  TH++  ++ +SL      R  +       PA LR          
Sbjct: 182 THCSVRTSTAARGCATTHRSAASSCSSLAAAPPRRLCSPVSGRRQPATLRH--------- 232

Query: 375 CLNLRRKSMRNICWRRW 425
           C +  +KS R   W+RW
Sbjct: 233 CCHRIKKSKRASSWKRW 249


>tr|Q75JS9|Q75JS9_DICDI Similar to Homo sapiens (Human). Tenascin
           (TN) (Hexabrachion) (Cytotactin) (Neuronectin) (GMEM)
           (JI) (Miotendinous antigen)
           (Glioma-associated-extracellular matrix antigen) (GP
           150-225) (Tenascin-C) (TN-C) OS=Dictyostelium discoideum
           PE=4 SV=1
          Length = 1501

 Score = 32.7 bits (73), Expect = 9.4
 Identities = 17/50 (34%), Positives = 20/50 (40%), Gaps = 12/50 (24%)
 Frame = +3

Query: 186 DLLSHATCQTNIGAKNCPATHQ------------AKNTALASLWGPANYR 299
           D   H  C T IG  NC ++HQ              N A  S WG  NY+
Sbjct: 848 DCSGHGYCDTTIGQCNCDSSHQGAGCEMDLILCPTSNKATCSGWGTCNYQ 897


>tr|Q559R8|Q559R8_DICDI Putative uncharacterized protein
            OS=Dictyostelium discoideum GN=DDB_0217012 PE=4 SV=1
          Length = 1540

 Score = 32.7 bits (73), Expect = 9.4
 Identities = 17/50 (34%), Positives = 20/50 (40%), Gaps = 12/50 (24%)
 Frame = +3

Query: 186  DLLSHATCQTNIGAKNCPATHQ------------AKNTALASLWGPANYR 299
            D   H  C T IG  NC ++HQ              N A  S WG  NY+
Sbjct: 860  DCSGHGYCDTTIGQCNCDSSHQGAGCEMDLILCPTSNKATCSGWGTCNYQ 909