BP911497
Clone id YMU001_000005_F08
Library
Length 591
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000005_F08.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
TCAGACTACACCTGAATGCAGTGACAAAACAAGAAGCACTCGACTGCTTTACATTATCCT
CGAAACCTTGCACCTCCTTTGTATGGGCACTCTCTCTTTCATCGATAATCCTATTGTTAC
AAGCTTGGTTGATGTTCACTTTCAATGCTATCTAAGCTGGGAGTTCTCCTCCGGCATTGT
CTGCTGCTTTATTAACTTGACATTAGATCCCCCATTCAAGACAACTGGGGGAACTGCTGG
TTTTCTTGCTGCTCGACCCCATTTAATTGCTGCCACTAAAGAATCTCCTTGGGCACCCAG
GCCCCTTCGCCCCACTAGTTTGACTCCGAGGGTTTCACAGAGATAAACCAGGCGTACCTT
GTCACCTCCTCGAATCTCCATCAAGTCTATTGCTTGTTGGCGAGAAATCATTGTGTACAG
ATGTAGCTGTTGCTGCTGATGCATCTGTAGTTGCTGAAATAGAAGCCTTTGTGGCATAGC
AGGTTGATCAGTGAGCCCACTATCGTTAACTTTCTTTCTCGCTCCCATGCCAATCATTAC
CCTTAAGAGTACATGAGACTTGGGTTCCTGGGTTCTAGGATCAAACAGTAT
■■Homology search results ■■ -
sp_hit_id Q9CAE3
Definition sp|Q9CAE3|LDL3_ARATH Lysine-specific histone demethylase 1 homolog 3 OS=Arabidopsis thaliana
Align length 117
Score (bit) 68.6
E-value 2.0e-11
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP911497|Adiantum capillus-veneris mRNA, clone:
YMU001_000005_F08.
(591 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q9CAE3|LDL3_ARATH Lysine-specific histone demethylase 1 homol... 69 2e-11
sp|Q7XUR2|LDL3_ORYSJ Lysine-specific histone demethylase 1 homol... 62 3e-09
sp|Q01H90|LDL3_ORYSI Lysine-specific histone demethylase 1 homol... 62 3e-09
sp|Q8VXV7|LDL1_ARATH Lysine-specific histone demethylase 1 homol... 39 0.015

>sp|Q9CAE3|LDL3_ARATH Lysine-specific histone demethylase 1 homolog 3
OS=Arabidopsis thaliana GN=FLD PE=1 SV=1
Length = 789

Score = 68.6 bits (166), Expect = 2e-11
Identities = 42/117 (35%), Positives = 59/117 (50%)
Frame = -1

Query: 591 ILFDPRTQEPKSHVLLRVMIGMGARKKVNDSGLTDQPAMPXXXXXXXXXXXXXXXXXLYT 412
I+F R +PKS +LRV + +K N+ DQ + +YT
Sbjct: 663 IIFSRRNPDPKSPAILRVTLS--EPRKRNEDPKADQHSNKILFQQLQSHFNQQQQIQVYT 720

Query: 411 MISRQQAIDLMEIRGGDKVRLVYLCETXXXXXXXXXXXGAQGDSLVAAIKWGRAARK 241
+++RQQA+DL E+RGGD+ RL YLCET G DS++A+IK R RK
Sbjct: 721 LLTRQQALDLREVRGGDEKRLYYLCETLGVKLVGRKGLGVGADSVIASIKAERTGRK 777


>sp|Q7XUR2|LDL3_ORYSJ Lysine-specific histone demethylase 1 homolog 3
OS=Oryza sativa subsp. japonica GN=Os04g0560300 PE=2 SV=2
Length = 811

Score = 61.6 bits (148), Expect = 3e-09
Identities = 39/129 (30%), Positives = 63/129 (48%), Gaps = 1/129 (0%)
Frame = -1

Query: 591 ILFDPRTQEPKSHVLLRVMIGMGARKKVNDSGLTDQP-AMPXXXXXXXXXXXXXXXXXLY 415
++F + +PKS +L+V +G +K + G DQ + +Y
Sbjct: 677 VIFGGQASDPKSPAILKVELGGPRKKGATEGGKADQHHSNKLLFQQLQSHFNQQQQLYVY 736

Query: 414 TMISRQQAIDLMEIRGGDKVRLVYLCETXXXXXXXXXXXGAQGDSLVAAIKWGRAARKPA 235
T++SRQQA++L E+RGGD++RL YLCE G D+++A+IK R + +
Sbjct: 737 TLLSRQQAMELREVRGGDEMRLHYLCEKLGVKLVGRKGLGPGADAVIASIKAERNSSRTK 796

Query: 234 VPPVVLNGG 208
P L G
Sbjct: 797 TRPSKLKIG 805


>sp|Q01H90|LDL3_ORYSI Lysine-specific histone demethylase 1 homolog 3
OS=Oryza sativa subsp. indica GN=B0103C08-B0602B01.13
PE=2 SV=1
Length = 811

Score = 61.6 bits (148), Expect = 3e-09
Identities = 39/129 (30%), Positives = 63/129 (48%), Gaps = 1/129 (0%)
Frame = -1

Query: 591 ILFDPRTQEPKSHVLLRVMIGMGARKKVNDSGLTDQP-AMPXXXXXXXXXXXXXXXXXLY 415
++F + +PKS +L+V +G +K + G DQ + +Y
Sbjct: 677 VIFGGQASDPKSPAILKVELGGPRKKGATEGGKADQHHSNKLLFQQLQSHFNQQQQLYVY 736

Query: 414 TMISRQQAIDLMEIRGGDKVRLVYLCETXXXXXXXXXXXGAQGDSLVAAIKWGRAARKPA 235
T++SRQQA++L E+RGGD++RL YLCE G D+++A+IK R + +
Sbjct: 737 TLLSRQQAMELREVRGGDEMRLHYLCEKLGVKLVGRKGLGPGADAVIASIKAERNSSRTK 796

Query: 234 VPPVVLNGG 208
P L G
Sbjct: 797 TRPSKLKIG 805


>sp|Q8VXV7|LDL1_ARATH Lysine-specific histone demethylase 1 homolog 1
OS=Arabidopsis thaliana GN=LDL1 PE=1 SV=1
Length = 844

Score = 39.3 bits (90), Expect = 0.015
Identities = 34/117 (29%), Positives = 55/117 (47%)
Frame = -1

Query: 591 ILFDPRTQEPKSHVLLRVMIGMGARKKVNDSGLTDQPAMPXXXXXXXXXXXXXXXXXLYT 412
+LF P + EP+S LLRV I M + +SGL LY
Sbjct: 753 VLFTPNSDEPESMSLLRVRIQM----EKPESGL-----------------------WLYG 785

Query: 411 MISRQQAIDLMEIRGGDKVRLVYLCETXXXXXXXXXXXGAQGDSLVAAIKWGRAARK 241
+++R+QAI+L E+ GD++R YL E +G+S+++++K R R+
Sbjct: 786 LVTRKQAIELGEM-DGDELRNEYLREKLGLVPVERKSLSQEGESMISSLKAARLNRQ 841


tr_hit_id A7PHZ8
Definition tr|A7PHZ8|A7PHZ8_VITVI Chromosome chr13 scaffold_17, whole genome shotgun sequence OS=Vitis vinifera
Align length 133
Score (bit) 67.0
E-value 8.0e-10
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP911497|Adiantum capillus-veneris mRNA, clone:
YMU001_000005_F08.
(591 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A7PHZ8|A7PHZ8_VITVI Chromosome chr13 scaffold_17, whole genom... 67 8e-10
tr|A3AWD3|A3AWD3_ORYSJ Putative uncharacterized protein OS=Oryza... 62 3e-08
tr|B6SXR1|B6SXR1_MAIZE Flowering locus D OS=Zea mays PE=2 SV=1 58 5e-07
tr|A9T0B0|A9T0B0_PHYPA SWIRM domain protein OS=Physcomitrella pa... 46 0.001
tr|A9S4V8|A9S4V8_PHYPA SWIRM domain protein OS=Physcomitrella pa... 40 0.100
tr|A7P1G5|A7P1G5_VITVI Chromosome chr19 scaffold_4, whole genome... 39 0.17
tr|Q5PQ99|Q5PQ99_XENLA Peptidyl-prolyl cis-trans isomerase OS=Xe... 34 7.1
tr|A4RT44|A4RT44_OSTLU Polyketide synthase OS=Ostreococcus lucim... 34 7.1

>tr|A7PHZ8|A7PHZ8_VITVI Chromosome chr13 scaffold_17, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00018140001
PE=4 SV=1
Length = 869

Score = 67.0 bits (162), Expect = 8e-10
Identities = 45/133 (33%), Positives = 65/133 (48%)
Frame = -1

Query: 591 ILFDPRTQEPKSHVLLRVMIGMGARKKVNDSGLTDQPAMPXXXXXXXXXXXXXXXXXLYT 412
++F + +PKS V+LRV G RK S L + +YT
Sbjct: 740 VIFGKKNSDPKSMVILRVTF-TGPRK---GSKLDQNHSNKLLFQQLESHFNHQQQLHIYT 795

Query: 411 MISRQQAIDLMEIRGGDKVRLVYLCETXXXXXXXXXXXGAQGDSLVAAIKWGRAARKPAV 232
++SRQQA++L E+RGGD +RL +LCE G DS++A+IK R RKPA
Sbjct: 796 LLSRQQALELREVRGGDDMRLNFLCEKLGVKLVARKGLGPSADSVIASIKAERGNRKPAS 855

Query: 231 PPVVLNGGSNVKL 193
+ L G ++L
Sbjct: 856 TSLALKSGECLEL 868


>tr|A3AWD3|A3AWD3_ORYSJ Putative uncharacterized protein OS=Oryza
sativa subsp. japonica GN=OsJ_015105 PE=4 SV=1
Length = 1205

Score = 61.6 bits (148), Expect = 3e-08
Identities = 39/129 (30%), Positives = 63/129 (48%), Gaps = 1/129 (0%)
Frame = -1

Query: 591 ILFDPRTQEPKSHVLLRVMIGMGARKKVNDSGLTDQP-AMPXXXXXXXXXXXXXXXXXLY 415
++F + +PKS +L+V +G +K + G DQ + +Y
Sbjct: 1071 VIFGGQASDPKSPAILKVELGGPRKKGATEGGKADQHHSNKLLFQQLQSHFNQQQQLYVY 1130

Query: 414 TMISRQQAIDLMEIRGGDKVRLVYLCETXXXXXXXXXXXGAQGDSLVAAIKWGRAARKPA 235
T++SRQQA++L E+RGGD++RL YLCE G D+++A+IK R + +
Sbjct: 1131 TLLSRQQAMELREVRGGDEMRLHYLCEKLGVKLVGRKGLGPGADAVIASIKAERNSSRTK 1190

Query: 234 VPPVVLNGG 208
P L G
Sbjct: 1191 TRPSKLKIG 1199


>tr|B6SXR1|B6SXR1_MAIZE Flowering locus D OS=Zea mays PE=2 SV=1
Length = 808

Score = 57.8 bits (138), Expect = 5e-07
Identities = 34/111 (30%), Positives = 56/111 (50%), Gaps = 1/111 (0%)
Frame = -1

Query: 591 ILFDPRTQEPKSHVLLRVMIGMGARKKVNDSGLTDQP-AMPXXXXXXXXXXXXXXXXXLY 415
++F + +PKS +L+V +G +K + T+Q + +Y
Sbjct: 672 VIFGGKASDPKSPAILKVELGASRKKNTAEGVKTEQNHSNKLLFQQLQSHFNQQQQLYVY 731

Query: 414 TMISRQQAIDLMEIRGGDKVRLVYLCETXXXXXXXXXXXGAQGDSLVAAIK 262
T++SRQQA++L E+RGGD +RL YLCE G D+++A+IK
Sbjct: 732 TLLSRQQAMELREVRGGDDMRLHYLCEKLGVKLVGRKGLGPGADAVIASIK 782


>tr|A9T0B0|A9T0B0_PHYPA SWIRM domain protein OS=Physcomitrella
patens subsp. patens GN=HDMA1501 PE=4 SV=1
Length = 685

Score = 46.2 bits (108), Expect = 0.001
Identities = 39/118 (33%), Positives = 53/118 (44%), Gaps = 1/118 (0%)
Frame = -1

Query: 591 ILFDPRTQEPKSHVLLRV-MIGMGARKKVNDSGLTDQPAMPXXXXXXXXXXXXXXXXXLY 415
++F+ + +P S +LRV MI G V+ G T+ LY
Sbjct: 579 VIFNQQVLDPSSLAILRVHMISPGKSTNVSVEGTTE--------------IFVPEQLFLY 624

Query: 414 TMISRQQAIDLMEIRGGDKVRLVYLCETXXXXXXXXXXXGAQGDSLVAAIKWGRAARK 241
T I+RQQA+DL + D RL +LC G GD LV+ IK GRAA+K
Sbjct: 625 TTITRQQALDLSRL-DNDNERLQHLCLNFGVKLVGRKGLGPAGDLLVSTIKSGRAAKK 681


>tr|A9S4V8|A9S4V8_PHYPA SWIRM domain protein OS=Physcomitrella
patens subsp. patens GN=HDMA1502 PE=4 SV=1
Length = 685

Score = 40.0 bits (92), Expect = 0.100
Identities = 35/118 (29%), Positives = 51/118 (43%), Gaps = 1/118 (0%)
Frame = -1

Query: 591 ILFDPRTQEPKSHVLLRV-MIGMGARKKVNDSGLTDQPAMPXXXXXXXXXXXXXXXXXLY 415
++F+ + +P S +LRV MI + G T+ LY
Sbjct: 579 VIFNQQVLDPSSLAILRVHMISPDKSANASVDGTTE--------------IFVPEQLFLY 624

Query: 414 TMISRQQAIDLMEIRGGDKVRLVYLCETXXXXXXXXXXXGAQGDSLVAAIKWGRAARK 241
T ++RQQA+DL + D RL +LC G +GD+LV IK RAA+K
Sbjct: 625 TTVTRQQALDLSRL-DNDNERLQHLCLNFGVKLVGRKGLGPEGDTLVFTIKSDRAAKK 681


>tr|A7P1G5|A7P1G5_VITVI Chromosome chr19 scaffold_4, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00027608001
PE=4 SV=1
Length = 755

Score = 39.3 bits (90), Expect = 0.17
Identities = 30/119 (25%), Positives = 53/119 (44%), Gaps = 4/119 (3%)
Frame = -1

Query: 588 LFDPRTQEPKSHVLLRVMIGMGARKKVNDSGLTDQ----PAMPXXXXXXXXXXXXXXXXX 421
+F+P T +PK+ ++R+ +G + + ++ + + P +P
Sbjct: 637 IFNPLTVDPKAMGIMRISVGNSSSENSSEKEIENSSQNSPDLPLQL-------------- 682

Query: 420 LYTMISRQQAIDLMEIRGGDKVRLVYLCETXXXXXXXXXXXGAQGDSLVAAIKWGRAAR 244
YTM+SR+QA + I G D+ RL +L + G+ G+SL A I R R
Sbjct: 683 -YTMLSREQAHQVQLIAGEDESRLSFLLKDLGLKLMGPSSMGSIGNSLAATIASARRGR 740


>tr|Q5PQ99|Q5PQ99_XENLA Peptidyl-prolyl cis-trans isomerase
OS=Xenopus laevis GN=ppil6 PE=2 SV=1
Length = 305

Score = 33.9 bits (76), Expect = 7.1
Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 10/41 (24%)
Frame = +2

Query: 104 DNPIVTSLVDVHFQCYLS----------WEFSSGIVCCFIN 196
D+P+VT L+D +Q YLS WE+SS ++ CFIN
Sbjct: 49 DHPVVTPLLDCEWQHYLSEKKKELKGEIWEYSSSVM-CFIN 88


>tr|A4RT44|A4RT44_OSTLU Polyketide synthase OS=Ostreococcus lucimarinus
(strain CCE9901) GN=pks2 PE=4 SV=1
Length = 18193

Score = 33.9 bits (76), Expect = 7.1
Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Frame = +2

Query: 86 GTLSFIDNPIVTSLVDVHF--QCYLSWEFSSGIVCCFINLTLDPPFKTTGGTAGFLA 250
GT + ID +SLV H L+ E S ++CC +N+TL+P TAG LA
Sbjct: 13464 GTCASIDTACSSSLVGSHVARNAVLTGECDS-MICCGVNITLNPTTTIVFRTAGMLA 13519



Score = 33.9 bits (76), Expect = 7.1
Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Frame = +2

Query: 86 GTLSFIDNPIVTSLVDVHF--QCYLSWEFSSGIVCCFINLTLDPPFKTTGGTAGFLA 250
GT + ID +SLV H L+ E S ++CC +N+TL+P TAG LA
Sbjct: 14698 GTCASIDTACSSSLVGSHVARNAVLTGECDS-MICCGVNITLNPTTTIVFRTAGMLA 14753



Score = 33.9 bits (76), Expect = 7.1
Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Frame = +2

Query: 86 GTLSFIDNPIVTSLVDVHF--QCYLSWEFSSGIVCCFINLTLDPPFKTTGGTAGFLA 250
GT + ID +SLV H L+ E S ++CC +N+TL+P TAG LA
Sbjct: 15932 GTCASIDTACSSSLVGSHVARNAVLTGECDS-MICCGVNITLNPTTTIVFRTAGMLA 15987