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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP911502
Clone id YMU001_000005_G01
Library
Length 376
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000005_G01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TGCATGTCCGAGCCTCGTGACACAGCTGTCATGCCTTGTCGACACATGTGCATGTGCAAT
GGTTGTGCAACTACATTTAAGTCACAGATGAATCGCTGTCCTATTTGTCGGCAGCCTGTG
GAGGCACTGCTGAAGATCAGGATATAGGCTCATTGCTGCCTCTATACTTTTGGGAAGGTC
CACCTTCACAGCTGCAAGCATGCTTATGCTGTCTGTGCTTGCACAAAAAGAATCTGTGGG
GGCTTTATTGATTGACGTATTTCAAGGTATGTAAGGTGTTGTTGAAAGACAGTGATTGTC
AGTTCACTGCTCATCTGAACTTCCAAATGGCTTCATTGAGATCTGATCAATTTGTACAGT
AATTGTTGAATGCCCT
■■Homology search results ■■ -
sp_hit_id Q7ZUL9
Definition sp|Q7ZUL9|MGRN1_DANRE Probable E3 ubiquitin-protein ligase MGRN1 OS=Danio rerio
Align length 47
Score (bit) 73.2
E-value 4.0e-13
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911502|Adiantum capillus-veneris mRNA, clone:
YMU001_000005_G01.
         (376 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q7ZUL9|MGRN1_DANRE Probable E3 ubiquitin-protein ligase MGRN1...    73   4e-13
sp|Q3TEL6|RN157_MOUSE RING finger protein 157 OS=Mus musculus GN...    73   5e-13
sp|Q96PX1|RN157_HUMAN RING finger protein 157 OS=Homo sapiens GN...    73   5e-13
sp|Q6INH1|RN157_XENLA RING finger protein 157 OS=Xenopus laevis ...    72   1e-12
sp|Q5XIQ4|MGRN1_RAT Probable E3 ubiquitin-protein ligase MGRN1 O...    71   2e-12
sp|Q9D074|MGRN1_MOUSE Probable E3 ubiquitin-protein ligase MGRN1...    71   2e-12
sp|O60291|MGRN1_HUMAN Probable E3 ubiquitin-protein ligase MGRN1...    71   2e-12
sp|Q0MW30|NEUL3_MOUSE E3 ubiquitin-protein ligase NEURL3 OS=Mus ...    50   3e-06
sp|A8MQ27|NEUL3_HUMAN E3 ubiquitin-protein ligase NEURL3 OS=Homo...    49   1e-05
sp|Q923S6|NEUL1_MOUSE Neuralized-like protein 1 OS=Mus musculus ...    46   5e-05
sp|O76050|NEUL1_HUMAN Neuralized-like protein 1 OS=Homo sapiens ...    46   5e-05
sp|P41435|IAP1_NPVAC Apoptosis inhibitor 1 OS=Autographa califor...    46   7e-05
sp|O10296|IAP1_NPVOP Apoptosis inhibitor 1 OS=Orgyia pseudotsuga...    45   9e-05
sp|Q7M3S9|RNGB_DICDI RING finger protein B OS=Dictyostelium disc...    44   2e-04
sp|Q99675|CGRF1_HUMAN Cell growth regulator with RING finger dom...    42   7e-04
sp|Q6TEM9|MYLIA_DANRE E3 ubiquitin-protein ligase MYLIP-A OS=Dan...    42   0.001
sp|Q8CIN9|RFFL_RAT E3 ubiquitin-protein ligase rififylin OS=Ratt...    42   0.001
sp|Q6ZQM0|RFFL_MOUSE E3 ubiquitin-protein ligase rififylin OS=Mu...    42   0.001
sp|Q8WZ73|RFFL_HUMAN E3 ubiquitin-protein ligase rififylin OS=Ho...    42   0.001
sp|P97587|CGRF1_RAT Cell growth regulator with RING finger domai...    41   0.002
sp|Q8BMJ7|CGRF1_MOUSE Cell growth regulator with RING finger dom...    41   0.002
sp|Q8CJC5|LINCR_MOUSE E3 ubiquitin-protein ligase LINCR OS=Mus m...    40   0.005
sp|Q24306|IAP1_DROME Apoptosis 1 inhibitor OS=Drosophila melanog...    39   0.006
sp|Q9BY78|RNF26_HUMAN RING finger protein 26 OS=Homo sapiens GN=...    39   0.008
sp|Q5M7X9|MUL1_DANRE Mitochondrial ubiquitin ligase activator of...    39   0.008
sp|O42354|MDM2_DANRE E3 ubiquitin-protein ligase Mdm2 OS=Danio r...    39   0.008
sp|Q96EH8|LINCR_HUMAN E3 ubiquitin-protein ligase LINCR OS=Homo ...    39   0.008
sp|Q5M870|LINCR_RAT E3 ubiquitin-protein ligase LINCR OS=Rattus ...    39   0.010
sp|Q8BM54|MYLIP_MOUSE E3 ubiquitin-protein ligase MYLIP OS=Mus m...    38   0.014
sp|Q8WY64|MYLIP_HUMAN E3 ubiquitin-protein ligase MYLIP OS=Homo ...    38   0.014

>sp|Q7ZUL9|MGRN1_DANRE Probable E3 ubiquitin-protein ligase MGRN1
           OS=Danio rerio GN=mgrn1 PE=2 SV=1
          Length = 529

 Score = 73.2 bits (178), Expect = 4e-13
 Identities = 28/47 (59%), Positives = 36/47 (76%)
 Frame = +1

Query: 1   CMSEPRDTAVMPCRHMCMCNGCATTFKSQMNRCPICRQPVEALLKIR 141
           C+S+ RDT ++PCRH+C+CN CA T + Q N CPICR P  ALL+IR
Sbjct: 279 CLSDLRDTLILPCRHLCLCNACADTLRYQANNCPICRLPFRALLQIR 325


>sp|Q3TEL6|RN157_MOUSE RING finger protein 157 OS=Mus musculus
           GN=Rnf157 PE=2 SV=2
          Length = 685

 Score = 72.8 bits (177), Expect = 5e-13
 Identities = 28/47 (59%), Positives = 36/47 (76%)
 Frame = +1

Query: 1   CMSEPRDTAVMPCRHMCMCNGCATTFKSQMNRCPICRQPVEALLKIR 141
           C+S+ RDT ++PCRH+C+CN CA T + Q N CPICR P  ALL+IR
Sbjct: 280 CLSDVRDTLILPCRHLCLCNTCADTLRYQANNCPICRLPFRALLQIR 326


>sp|Q96PX1|RN157_HUMAN RING finger protein 157 OS=Homo sapiens
           GN=RNF157 PE=2 SV=3
          Length = 679

 Score = 72.8 bits (177), Expect = 5e-13
 Identities = 28/47 (59%), Positives = 36/47 (76%)
 Frame = +1

Query: 1   CMSEPRDTAVMPCRHMCMCNGCATTFKSQMNRCPICRQPVEALLKIR 141
           C+S+ RDT ++PCRH+C+CN CA T + Q N CPICR P  ALL+IR
Sbjct: 280 CLSDVRDTLILPCRHLCLCNTCADTLRYQANNCPICRLPFRALLQIR 326


>sp|Q6INH1|RN157_XENLA RING finger protein 157 OS=Xenopus laevis
           GN=rnf157 PE=2 SV=1
          Length = 674

 Score = 71.6 bits (174), Expect = 1e-12
 Identities = 27/47 (57%), Positives = 36/47 (76%)
 Frame = +1

Query: 1   CMSEPRDTAVMPCRHMCMCNGCATTFKSQMNRCPICRQPVEALLKIR 141
           C+S+ RDT ++PCRH+C+CN CA T + Q + CPICR P  ALL+IR
Sbjct: 280 CLSDVRDTLILPCRHLCLCNACADTLRYQASNCPICRLPFRALLQIR 326


>sp|Q5XIQ4|MGRN1_RAT Probable E3 ubiquitin-protein ligase MGRN1
           OS=Rattus norvegicus GN=Mgrn1 PE=2 SV=1
          Length = 533

 Score = 70.9 bits (172), Expect = 2e-12
 Identities = 27/47 (57%), Positives = 35/47 (74%)
 Frame = +1

Query: 1   CMSEPRDTAVMPCRHMCMCNGCATTFKSQMNRCPICRQPVEALLKIR 141
           C+S+ RDT ++PCRH+C+C  CA T + Q N CPICR P  ALL+IR
Sbjct: 282 CLSDLRDTLILPCRHLCLCTSCADTLRYQANNCPICRLPFRALLQIR 328


>sp|Q9D074|MGRN1_MOUSE Probable E3 ubiquitin-protein ligase MGRN1
           OS=Mus musculus GN=Mgrn1 PE=1 SV=2
          Length = 532

 Score = 70.9 bits (172), Expect = 2e-12
 Identities = 27/47 (57%), Positives = 35/47 (74%)
 Frame = +1

Query: 1   CMSEPRDTAVMPCRHMCMCNGCATTFKSQMNRCPICRQPVEALLKIR 141
           C+S+ RDT ++PCRH+C+C  CA T + Q N CPICR P  ALL+IR
Sbjct: 281 CLSDLRDTLILPCRHLCLCTSCADTLRYQANNCPICRLPFRALLQIR 327


>sp|O60291|MGRN1_HUMAN Probable E3 ubiquitin-protein ligase MGRN1
           OS=Homo sapiens GN=MGRN1 PE=1 SV=2
          Length = 552

 Score = 70.9 bits (172), Expect = 2e-12
 Identities = 27/47 (57%), Positives = 35/47 (74%)
 Frame = +1

Query: 1   CMSEPRDTAVMPCRHMCMCNGCATTFKSQMNRCPICRQPVEALLKIR 141
           C+S+ RDT ++PCRH+C+C  CA T + Q N CPICR P  ALL+IR
Sbjct: 281 CLSDLRDTLILPCRHLCLCTSCADTLRYQANNCPICRLPFRALLQIR 327


>sp|Q0MW30|NEUL3_MOUSE E3 ubiquitin-protein ligase NEURL3 OS=Mus
           musculus GN=Neurl3 PE=2 SV=1
          Length = 546

 Score = 50.4 bits (119), Expect = 3e-06
 Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
 Frame = +1

Query: 1   CMSEPRDTAVMPCRHMCMCNGCATTFKSQMNR-CPICRQPVEALLKI 138
           C     DT +  C HMC+C+GC    + Q    CPICR+P++ ++KI
Sbjct: 497 CFDSEVDTVIYTCGHMCLCHGCGLRLRRQARACCPICRRPIKDVIKI 543


>sp|A8MQ27|NEUL3_HUMAN E3 ubiquitin-protein ligase NEURL3 OS=Homo
           sapiens GN=NEURL3 PE=3 SV=1
          Length = 555

 Score = 48.5 bits (114), Expect = 1e-05
 Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = +1

Query: 1   CMSEPRDTAVMPCRHMCMCNGCATTFKSQMNR-CPICRQPVEALLKI 138
           C     DT +  C HMC+C+ C    K Q    CPICR+P++ ++KI
Sbjct: 506 CFDGEVDTVIYTCGHMCLCHSCGLRLKRQARACCPICRRPIKDVIKI 552


>sp|Q923S6|NEUL1_MOUSE Neuralized-like protein 1 OS=Mus musculus
           GN=Neurl PE=2 SV=1
          Length = 574

 Score = 46.2 bits (108), Expect = 5e-05
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +1

Query: 1   CMSEPRDTAVMPCRHMCMCNGCATTFKSQMNR-CPICRQPVEALLK 135
           C     DT +  C HMC+C  C    K  ++  CPICR+P++ ++K
Sbjct: 524 CYEHAVDTVIYTCGHMCLCYSCGLRLKKALHACCPICRRPIKDIIK 569
tr_hit_id A7NZI3
Definition tr|A7NZI3|A7NZI3_VITVI Chromosome chr6 scaffold_3, whole genome shotgun sequence OS=Vitis vinifera
Align length 48
Score (bit) 88.2
E-value 2.0e-16
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911502|Adiantum capillus-veneris mRNA, clone:
YMU001_000005_G01.
         (376 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7NZI3|A7NZI3_VITVI Chromosome chr6 scaffold_3, whole genome ...    88   2e-16
tr|Q9S752|Q9S752_ARATH Putative uncharacterized protein F11F8.36...    86   7e-16
tr|B3U2B1|B3U2B1_CUCSA Zinc finger RING-type protein OS=Cucumis ...    86   7e-16
tr|Q2HV40|Q2HV40_MEDTR Zinc finger, RING-type OS=Medicago trunca...    84   3e-15
tr|Q8RUJ8|Q8RUJ8_ORYSJ Os10g0204100 protein OS=Oryza sativa subs...    83   6e-15
tr|B8BG37|B8BG37_ORYSI Putative uncharacterized protein OS=Oryza...    83   6e-15
tr|A3C3D3|A3C3D3_ORYSJ Putative uncharacterized protein OS=Oryza...    83   6e-15
tr|A9SWZ9|A9SWZ9_PHYPA Predicted protein OS=Physcomitrella paten...    82   1e-14
tr|A9SCV6|A9SCV6_PHYPA Predicted protein (Fragment) OS=Physcomit...    82   2e-14
tr|Q9LYW5|Q9LYW5_ARATH Putative uncharacterized protein F15A17_2...    81   2e-14
tr|Q8L8P7|Q8L8P7_ARATH Putative RING zinc finger protein OS=Arab...    81   2e-14
tr|Q8GZ27|Q8GZ27_ARATH Putative uncharacterized protein At5g0320...    81   2e-14
tr|A9NUZ8|A9NUZ8_PICSI Putative uncharacterized protein OS=Picea...    81   2e-14
tr|A7NWF8|A7NWF8_VITVI Chromosome chr5 scaffold_2, whole genome ...    81   2e-14
tr|Q9LFH6|Q9LFH6_ARATH Putative uncharacterized protein F4P12_11...    81   3e-14
tr|Q10NY0|Q10NY0_ORYSJ cDNA clone:J023020P04, full insert sequen...    81   3e-14
tr|Q0DTD5|Q0DTD5_ORYSJ Os03g0254900 protein (Fragment) OS=Oryza ...    81   3e-14
tr|A3ABI1|A3ABI1_ORYSJ Putative uncharacterized protein OS=Oryza...    81   3e-14
tr|A2XEN7|A2XEN7_ORYSI Putative uncharacterized protein OS=Oryza...    81   3e-14
tr|Q94E82|Q94E82_ORYSJ Mahogunin, ring finger 1-like protein (Os...    80   4e-14
tr|B8A897|B8A897_ORYSI Putative uncharacterized protein OS=Oryza...    80   4e-14
tr|A8IE95|A8IE95_CHLRE Zinc finger protein, RING-type OS=Chlamyd...    80   4e-14
tr|A7PT26|A7PT26_VITVI Chromosome chr8 scaffold_29, whole genome...    80   4e-14
tr|A5B9W9|A5B9W9_VITVI Putative uncharacterized protein OS=Vitis...    80   4e-14
tr|A2ZTA9|A2ZTA9_ORYSJ Putative uncharacterized protein OS=Oryza...    80   4e-14
tr|A2WQ54|A2WQ54_ORYSI Putative uncharacterized protein OS=Oryza...    80   4e-14
tr|Q75HV4|Q75HV4_ORYSJ Putative uncharacterized protein OSJNBb00...    80   7e-14
tr|A3B3T0|A3B3T0_ORYSJ Putative uncharacterized protein OS=Oryza...    80   7e-14
tr|A2Y4E4|A2Y4E4_ORYSI Putative uncharacterized protein OS=Oryza...    80   7e-14
tr|A9NRJ5|A9NRJ5_PICSI Putative uncharacterized protein OS=Picea...    79   1e-13

>tr|A7NZI3|A7NZI3_VITVI Chromosome chr6 scaffold_3, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00024522001
           PE=4 SV=1
          Length = 349

 Score = 88.2 bits (217), Expect = 2e-16
 Identities = 35/48 (72%), Positives = 41/48 (85%)
 Frame = +1

Query: 1   CMSEPRDTAVMPCRHMCMCNGCATTFKSQMNRCPICRQPVEALLKIRI 144
           C+SEPRDT V+PCRHMCMC GCA   + QMNRCPICRQPVE LL+I++
Sbjct: 296 CLSEPRDTTVLPCRHMCMCGGCAKVLRFQMNRCPICRQPVEQLLEIKV 343


>tr|Q9S752|Q9S752_ARATH Putative uncharacterized protein F11F8.36
           (Putative RING zinc finger protein) OS=Arabidopsis
           thaliana GN=F8A24.18 PE=2 SV=1
          Length = 388

 Score = 86.3 bits (212), Expect = 7e-16
 Identities = 34/48 (70%), Positives = 41/48 (85%)
 Frame = +1

Query: 1   CMSEPRDTAVMPCRHMCMCNGCATTFKSQMNRCPICRQPVEALLKIRI 144
           C+SEPRDT V+PCRHMCMC+GCA   + Q NRCPICRQPVE LL+I++
Sbjct: 322 CLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIKV 369


>tr|B3U2B1|B3U2B1_CUCSA Zinc finger RING-type protein OS=Cucumis
           sativus PE=4 SV=1
          Length = 300

 Score = 86.3 bits (212), Expect = 7e-16
 Identities = 34/48 (70%), Positives = 41/48 (85%)
 Frame = +1

Query: 1   CMSEPRDTAVMPCRHMCMCNGCATTFKSQMNRCPICRQPVEALLKIRI 144
           C+SEPRDT V+PCRHMCMC+GCA   + Q NRCPICRQPV+ LL+IR+
Sbjct: 246 CLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVDRLLEIRV 293


>tr|Q2HV40|Q2HV40_MEDTR Zinc finger, RING-type OS=Medicago
           truncatula GN=MtrDRAFT_AC148995g25v2 PE=4 SV=1
          Length = 352

 Score = 84.3 bits (207), Expect = 3e-15
 Identities = 34/48 (70%), Positives = 40/48 (83%)
 Frame = +1

Query: 1   CMSEPRDTAVMPCRHMCMCNGCATTFKSQMNRCPICRQPVEALLKIRI 144
           C+SEPRDT V PCRHMCMC+GCA   + Q NRCPICRQPVE LL+I++
Sbjct: 301 CLSEPRDTIVHPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIKV 348


>tr|Q8RUJ8|Q8RUJ8_ORYSJ Os10g0204100 protein OS=Oryza sativa subsp.
           japonica GN=OSJNBa0004P12.16 PE=4 SV=1
          Length = 425

 Score = 83.2 bits (204), Expect = 6e-15
 Identities = 33/48 (68%), Positives = 40/48 (83%)
 Frame = +1

Query: 1   CMSEPRDTAVMPCRHMCMCNGCATTFKSQMNRCPICRQPVEALLKIRI 144
           C+SEPRDT V+PCRHMCMC+ CA   + Q NRCPICRQPVE LL+I++
Sbjct: 346 CLSEPRDTTVLPCRHMCMCSECAKVLRYQTNRCPICRQPVERLLEIKV 393


>tr|B8BG37|B8BG37_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_32999 PE=4 SV=1
          Length = 425

 Score = 83.2 bits (204), Expect = 6e-15
 Identities = 33/48 (68%), Positives = 40/48 (83%)
 Frame = +1

Query: 1   CMSEPRDTAVMPCRHMCMCNGCATTFKSQMNRCPICRQPVEALLKIRI 144
           C+SEPRDT V+PCRHMCMC+ CA   + Q NRCPICRQPVE LL+I++
Sbjct: 346 CLSEPRDTTVLPCRHMCMCSECAKVLRYQTNRCPICRQPVERLLEIKV 393


>tr|A3C3D3|A3C3D3_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_029805 PE=4 SV=1
          Length = 426

 Score = 83.2 bits (204), Expect = 6e-15
 Identities = 33/48 (68%), Positives = 40/48 (83%)
 Frame = +1

Query: 1   CMSEPRDTAVMPCRHMCMCNGCATTFKSQMNRCPICRQPVEALLKIRI 144
           C+SEPRDT V+PCRHMCMC+ CA   + Q NRCPICRQPVE LL+I++
Sbjct: 347 CLSEPRDTTVLPCRHMCMCSECAKVLRYQTNRCPICRQPVERLLEIKV 394


>tr|A9SWZ9|A9SWZ9_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_216589 PE=4 SV=1
          Length = 414

 Score = 82.0 bits (201), Expect = 1e-14
 Identities = 33/48 (68%), Positives = 39/48 (81%)
 Frame = +1

Query: 1   CMSEPRDTAVMPCRHMCMCNGCATTFKSQMNRCPICRQPVEALLKIRI 144
           CMSEPRDT V+PCRHMCMC+ CA   + Q NRCPICR PVE LL+I++
Sbjct: 315 CMSEPRDTTVLPCRHMCMCSECAKVLRFQTNRCPICRTPVERLLEIKV 362


>tr|A9SCV6|A9SCV6_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_15264 PE=4 SV=1
          Length = 257

 Score = 81.6 bits (200), Expect = 2e-14
 Identities = 32/48 (66%), Positives = 39/48 (81%)
 Frame = +1

Query: 1   CMSEPRDTAVMPCRHMCMCNGCATTFKSQMNRCPICRQPVEALLKIRI 144
           CMSEPRDT V+PCRHMCMC+ CA   + Q NRCP+CR PVE LL+I++
Sbjct: 210 CMSEPRDTTVLPCRHMCMCSECAKVLRFQTNRCPVCRTPVEKLLEIKV 257


>tr|Q9LYW5|Q9LYW5_ARATH Putative uncharacterized protein F15A17_230
           (At5g03200) (RING zinc finger protein-like)
           OS=Arabidopsis thaliana GN=F15A17_230 PE=2 SV=1
          Length = 337

 Score = 81.3 bits (199), Expect = 2e-14
 Identities = 32/46 (69%), Positives = 38/46 (82%)
 Frame = +1

Query: 1   CMSEPRDTAVMPCRHMCMCNGCATTFKSQMNRCPICRQPVEALLKI 138
           C+SEPRDT V+PCRHMCMC+GCA   + Q N CP+CRQPVE LL+I
Sbjct: 288 CLSEPRDTTVLPCRHMCMCSGCAKALRFQTNLCPVCRQPVEMLLEI 333