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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP911503
Clone id YMU001_000005_G02
Library
Length 534
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000005_G02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CACTTCTTTGGCCACCTCTACATTCACCCCGCCCATTGTCATTGTTTCACGTCTCACAAA
TTTCGGTTGCCACACTAGGGCTCCCGACCACTAGCATGTCTACTAGTGCAGAGGCAGCTA
CTTCAGGGCAAGGTGACCCCTACGTCAACTTTTTGGCCCAAGCGAACAGATTTCTGGAGA
TAGATAGAAAAACAATTCAGAGTATTGCAGATACAGCGCTTACTTTGCAGGGTACTCACG
GCTTGCATTGTGCAGTGTATGACATCATGCAAAGGGAGATTTACAGTCACATTCAGAGAT
CAACGGACAGGGATGTATCGATTGCACAGAACCAAGATCGCATGAGAATTCTAAACAGAC
AGATGCAAGATCTTAAAAAAGTGGTCAAAACTTTACATATGCAGCTTACAGAGGCCAATG
ATCTTGCATCTATTCAGGAGCTTGCTTCAATAATCGCTCAAGTGTGTCCCTCATGCGCCC
ACGCGCATTCCATAGCGGTTTTGCTGTCAGTTACATCACCGATTACTGTCACTG
■■Homology search results ■■ -
sp_hit_id Q3AUE2
Definition sp|Q3AUE2|RF1_CHLCH Peptide chain release factor 1 OS=Chlorobium chlorochromatii (strain CaD3)
Align length 44
Score (bit) 33.5
E-value 0.66
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911503|Adiantum capillus-veneris mRNA, clone:
YMU001_000005_G02.
         (534 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q3AUE2|RF1_CHLCH Peptide chain release factor 1 OS=Chlorobium...    33   0.66 
sp|A3QH30|RF1_SHELP Peptide chain release factor 1 OS=Shewanella...    32   1.5  
sp|Q9GL21|UACA_CANFA Uveal autoantigen with coiled-coil domains ...    32   1.9  
sp|A1U367|RF1_MARAV Peptide chain release factor 1 OS=Marinobact...    32   1.9  
sp|O15078|CE290_HUMAN Centrosomal protein of 290 kDa OS=Homo sap...    32   2.5  
sp|A7MY68|RF1_VIBHB Peptide chain release factor 1 OS=Vibrio har...    31   3.3  
sp|Q98631|RDRP_RDVF RNA-directed RNA polymerase OS=Rice dwarf vi...    31   3.3  
sp|Q02119|RDRP_RDVA RNA-directed RNA polymerase OS=Rice dwarf vi...    31   3.3  
sp|Q9RBS0|POPA_RALSO Protein popA1 OS=Ralstonia solanacearum GN=...    31   4.3  
sp|Q0E0A6|HOX7_ORYSJ Homeobox-leucine zipper protein HOX7 OS=Ory...    31   4.3  
sp|A2X674|HOX7_ORYSI Homeobox-leucine zipper protein HOX7 OS=Ory...    31   4.3  
sp|Q5U3W3|RUN3B_DANRE RUN domain-containing protein 3B OS=Danio ...    30   5.6  
sp|Q3IRM5|RNZ_NATPD Ribonuclease Z OS=Natronomonas pharaonis (st...    30   5.6  
sp|Q5TZA2|CROCC_HUMAN Rootletin OS=Homo sapiens GN=CROCC PE=1 SV=1     30   5.6  
sp|O29365|Y897_ARCFU Uncharacterized protein AF_0897 OS=Archaeog...    30   7.3  
sp|Q87RN4|RF1_VIBPA Peptide chain release factor 1 OS=Vibrio par...    30   7.3  
sp|Q6BVM4|BOS1_DEBHA Protein transport protein BOS1 OS=Debaryomy...    30   7.3  

>sp|Q3AUE2|RF1_CHLCH Peptide chain release factor 1 OS=Chlorobium
           chlorochromatii (strain CaD3) GN=prfA PE=3 SV=1
          Length = 357

 Score = 33.5 bits (75), Expect = 0.66
 Identities = 16/44 (36%), Positives = 27/44 (61%)
 Frame = +3

Query: 312 DVSIAQNQDRMRILNRQMQDLKKVVKTLHMQLTEANDLASIQEL 443
           D S+A +Q+R R LNR+  +L++VV+       +A +L + Q L
Sbjct: 21  DPSLANDQERFRKLNREYSNLREVVQAFDAYQRKATELEAAQHL 64


>sp|A3QH30|RF1_SHELP Peptide chain release factor 1 OS=Shewanella
           loihica (strain ATCC BAA-1088 / PV-4) GN=prfA PE=3 SV=1
          Length = 361

 Score = 32.3 bits (72), Expect = 1.5
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = +3

Query: 312 DVSIAQNQDRMRILNRQMQDLKKVVKTLHMQLTEANDLASIQEL 443
           D  I  +Q+R R L+++   L+ VVK+         DLAS QE+
Sbjct: 25  DAEIIADQERFRALSKEYSQLEDVVKSFKAYRQAEEDLASAQEM 68


>sp|Q9GL21|UACA_CANFA Uveal autoantigen with coiled-coil domains and
            ankyrin repeats OS=Canis familiaris GN=UACA PE=2 SV=2
          Length = 1415

 Score = 32.0 bits (71), Expect = 1.9
 Identities = 16/51 (31%), Positives = 31/51 (60%)
 Frame = +3

Query: 261  DIMQREIYSHIQRSTDRDVSIAQNQDRMRILNRQMQDLKKVVKTLHMQLTE 413
            D +++EI++  +   D++V I  + D  R LNR+ ++L K +K L  + +E
Sbjct: 1030 DKLKKEIFTLQKDLKDKNVLIENSHDMERALNRKAEELNKQLKDLLQKYSE 1080


>sp|A1U367|RF1_MARAV Peptide chain release factor 1 OS=Marinobacter
           aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=prfA
           PE=3 SV=1
          Length = 363

 Score = 32.0 bits (71), Expect = 1.9
 Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 9/69 (13%)
 Frame = +3

Query: 267 MQREIYSHIQRSTDR---------DVSIAQNQDRMRILNRQMQDLKKVVKTLHMQLTEAN 419
           M+  I S +++  +R         D S+  NQD+ R L+R+  +++ VVK          
Sbjct: 1   MKPSIQSRLEQLVERFEEVNALLSDASVIANQDKFRDLSREFAEIEPVVKCFQAWRQSLE 60

Query: 420 DLASIQELA 446
           D+ +  ELA
Sbjct: 61  DIDAATELA 69


>sp|O15078|CE290_HUMAN Centrosomal protein of 290 kDa OS=Homo sapiens
            GN=CEP290 PE=1 SV=2
          Length = 2479

 Score = 31.6 bits (70), Expect = 2.5
 Identities = 26/86 (30%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
 Frame = +3

Query: 255  VYDIMQREIYSHIQRSTDRDVS-IAQNQDRMRILNRQMQDLKKVVKTLHMQLTEANDLAS 431
            + ++ + E+   ++ S  R++S IA+ Q  + ILN Q Q   K V++L MQL    D  +
Sbjct: 1138 ILELEKNEMELKVEVSKLREISDIARRQ--VEILNAQQQSRDKEVESLRMQLL---DYQA 1192

Query: 432  IQELASIIAQVCPSCAHAHSIAVLLS 509
              +  S+IA++     H H++++ LS
Sbjct: 1193 QSDEKSLIAKL-----HQHNVSLQLS 1213


>sp|A7MY68|RF1_VIBHB Peptide chain release factor 1 OS=Vibrio
           harveyi (strain ATCC BAA-1116 / BB120) GN=prfA PE=3 SV=1
          Length = 362

 Score = 31.2 bits (69), Expect = 3.3
 Identities = 16/58 (27%), Positives = 30/58 (51%)
 Frame = +3

Query: 276 EIYSHIQRSTDRDVSIAQNQDRMRILNRQMQDLKKVVKTLHMQLTEANDLASIQELAS 449
           E Y  +Q     D  +  NQD+ R L+++   L++V K         +DLA+ +++A+
Sbjct: 14  ERYEEVQHLLG-DPDVIGNQDKFRALSKEYSQLEEVTKCFQAYQQAQDDLAAAEDMAN 70


>sp|Q98631|RDRP_RDVF RNA-directed RNA polymerase OS=Rice dwarf virus
            (isolate Fujian) GN=S1 PE=3 SV=1
          Length = 1444

 Score = 31.2 bits (69), Expect = 3.3
 Identities = 20/90 (22%), Positives = 40/90 (44%)
 Frame = +3

Query: 174  LEIDRKTIQSIADTALTLQGTHGLHCAVYDIMQREIYSHIQRSTDRDVSIAQNQDRMRIL 353
            LE+ RK+I+ +  + +++  TH      Y  + +   S      DRD S   N+  +  L
Sbjct: 1103 LEVSRKSIRDLRSSGISVPSTHAYENLPYASLHQSFKS---LKVDRDTSKFTNERLLVSL 1159

Query: 354  NRQMQDLKKVVKTLHMQLTEANDLASIQEL 443
                 D+ +V  T    + +  +++ + EL
Sbjct: 1160 LEYKSDIPRVSVTSQYPVYDLINISKVDEL 1189


>sp|Q02119|RDRP_RDVA RNA-directed RNA polymerase OS=Rice dwarf virus
            (isolate Akita) GN=S1 PE=2 SV=1
          Length = 1444

 Score = 31.2 bits (69), Expect = 3.3
 Identities = 20/90 (22%), Positives = 40/90 (44%)
 Frame = +3

Query: 174  LEIDRKTIQSIADTALTLQGTHGLHCAVYDIMQREIYSHIQRSTDRDVSIAQNQDRMRIL 353
            LE+ RK+I+ +  + +++  TH      Y  + +   S      DRD S   N+  +  L
Sbjct: 1103 LEVSRKSIRDLRSSGISVPSTHAYENLPYASLHQSFKS---LKVDRDTSKFTNERLLVSL 1159

Query: 354  NRQMQDLKKVVKTLHMQLTEANDLASIQEL 443
                 D+ +V  T    + +  +++ + EL
Sbjct: 1160 LEYKSDIPRVSVTSQYPVYDLINISKVDEL 1189


>sp|Q9RBS0|POPA_RALSO Protein popA1 OS=Ralstonia solanacearum
           GN=popA PE=4 SV=1
          Length = 344

 Score = 30.8 bits (68), Expect = 4.3
 Identities = 17/38 (44%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
 Frame = +3

Query: 312 DVSIAQNQDRMRILNRQMQDLKKVVK-TLHMQLTEAND 422
           +V  A NQD M+ L + ++DL K++K  LHMQ    ND
Sbjct: 102 NVDDANNQDPMQALMQLLEDLVKLLKAALHMQQPGGND 139


>sp|Q0E0A6|HOX7_ORYSJ Homeobox-leucine zipper protein HOX7 OS=Oryza
           sativa subsp. japonica GN=HOX7 PE=1 SV=1
          Length = 349

 Score = 30.8 bits (68), Expect = 4.3
 Identities = 15/55 (27%), Positives = 26/55 (47%)
 Frame = +3

Query: 345 RILNRQMQDLKKVVKTLHMQLTEANDLASIQELASIIAQVCPSCAHAHSIAVLLS 509
           R L R++ +L+  ++T          L  +   A  + +VCPSC H+  +A   S
Sbjct: 229 RRLQREVAELRGTLRTTTSSYPPLYGLHHLPAAAGTVFRVCPSCEHSKVVAAAAS 283
tr_hit_id B1C257
Definition tr|B1C257|B1C257_9FIRM Putative uncharacterized protein OS=Clostridium spiroforme DSM 1552
Align length 116
Score (bit) 43.5
E-value 0.007
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911503|Adiantum capillus-veneris mRNA, clone:
YMU001_000005_G02.
         (534 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B1C257|B1C257_9FIRM Putative uncharacterized protein OS=Clost...    44   0.007
tr|Q9U284|Q9U284_CAEEL Protein Y48G10A.2, partially confirmed by...    40   0.098
tr|A6DHH5|A6DHH5_9BACT Putative uncharacterized protein OS=Lenti...    35   2.4  
tr|B6FNY0|B6FNY0_9CLOT Putative uncharacterized protein OS=Clost...    35   3.2  
tr|B0N575|B0N575_9FIRM Putative uncharacterized protein OS=Clost...    34   4.1  
tr|B6FKR5|B6FKR5_9CLOT Putative uncharacterized protein OS=Clost...    34   5.4  
tr|A0Y6A9|A0Y6A9_9GAMM Peptide chain release factor 1 (RF-1) OS=...    34   5.4  
tr|B6MYG2|B6MYG2_BRAFL Putative uncharacterized protein OS=Branc...    34   5.4  
tr|B6MC45|B6MC45_BRAFL Putative uncharacterized protein OS=Branc...    33   7.0  

>tr|B1C257|B1C257_9FIRM Putative uncharacterized protein
           OS=Clostridium spiroforme DSM 1552 GN=CLOSPI_01314 PE=4
           SV=1
          Length = 388

 Score = 43.5 bits (101), Expect = 0.007
 Identities = 31/116 (26%), Positives = 56/116 (48%), Gaps = 3/116 (2%)
 Frame = +3

Query: 183 DRKTIQSIADTAL---TLQGTHGLHCAVYDIMQREIYSHIQRSTDRDVSIAQNQDRMRIL 353
           D+  I+ I +  L   T+ G H L    Y   +R +  H++  +D D+ +    D M ++
Sbjct: 228 DKDLIKDIENYILSFPTVLGIHDLMMHDYGPGRRFLTLHVEVDSDNDIMLVH--DEMDVI 285

Query: 354 NRQMQDLKKVVKTLHMQLTEANDLASIQELASIIAQVCPSCAHAHSIAVLLSVTSP 521
            R + D   ++ T+HM   ++ND+ +  EL  I+ +V  +    +SI     VT P
Sbjct: 286 ERAILDKYHILTTIHMDPIDSNDILT-NELKQIVLKVVKNINKQYSIHDFRIVTGP 340


>tr|Q9U284|Q9U284_CAEEL Protein Y48G10A.2, partially confirmed by
           transcript evidence OS=Caenorhabditis elegans
           GN=Y48G10A.2 PE=1 SV=1
          Length = 375

 Score = 39.7 bits (91), Expect = 0.098
 Identities = 23/79 (29%), Positives = 41/79 (51%)
 Frame = +3

Query: 174 LEIDRKTIQSIADTALTLQGTHGLHCAVYDIMQREIYSHIQRSTDRDVSIAQNQDRMRIL 353
           +E+++ ++ S    A T++  H  HC V +++    Y+   R    D    Q++  M +L
Sbjct: 157 VELEKISVVSFLSQAKTIEEWHSRHCMVNEMLSTIKYN---REQGIDYLRKQSEKVMTLL 213

Query: 354 NRQMQDLKKVVKTLHMQLT 410
           N   Q++K V +TL  QLT
Sbjct: 214 NNAAQEIKSVSRTLPKQLT 232


>tr|A6DHH5|A6DHH5_9BACT Putative uncharacterized protein
           OS=Lentisphaera araneosa HTCC2155 GN=LNTAR_14617 PE=4
           SV=1
          Length = 726

 Score = 35.0 bits (79), Expect = 2.4
 Identities = 15/44 (34%), Positives = 29/44 (65%)
 Frame = +3

Query: 372 LKKVVKTLHMQLTEANDLASIQELASIIAQVCPSCAHAHSIAVL 503
           LK ++++LH Q +E     S+ +L +I  ++C + A+AHS +V+
Sbjct: 128 LKDIIQSLHNQQSEYVQKFSLHDLLNIFIKICDAVAYAHSKSVI 171


>tr|B6FNY0|B6FNY0_9CLOT Putative uncharacterized protein
           OS=Clostridium nexile DSM 1787 GN=CLONEX_01843 PE=4 SV=1
          Length = 939

 Score = 34.7 bits (78), Expect = 3.2
 Identities = 27/97 (27%), Positives = 41/97 (42%), Gaps = 7/97 (7%)
 Frame = +3

Query: 186 RKTIQSIADTALTLQGTHGLH-------CAVYDIMQREIYSHIQRSTDRDVSIAQNQDRM 344
           +KT  S  D  +T Q +   H       C V D    + YS   R  D +  +AQN+D+ 
Sbjct: 155 KKTPDSARDKRITAQQSIPYHEMGRDGICRVQD----KFYSKTIRFYDINYQLAQNEDKN 210

Query: 345 RILNRQMQDLKKVVKTLHMQLTEANDLASIQELASII 455
            I       L     T+H QL+  N  +++ E   +I
Sbjct: 211 AIFENWCDFLNYFDSTIHFQLSFINQHSNMAEYEKVI 247


>tr|B0N575|B0N575_9FIRM Putative uncharacterized protein
           OS=Clostridium ramosum DSM 1402 GN=CLORAM_01787 PE=4
           SV=1
          Length = 388

 Score = 34.3 bits (77), Expect = 4.1
 Identities = 27/114 (23%), Positives = 48/114 (42%), Gaps = 1/114 (0%)
 Frame = +3

Query: 183 DRKTIQSIADTALTLQGTHGLH-CAVYDIMQREIYSHIQRSTDRDVSIAQNQDRMRILNR 359
           D++ I  I +  L+     G+H   ++D      +  +    D + +I    D M ++ R
Sbjct: 228 DKELINEIEEYILSYPEALGIHDLMMHDYGPGRKFLTLHVEVDCNDNIMAVHDAMDLIER 287

Query: 360 QMQDLKKVVKTLHMQLTEANDLASIQELASIIAQVCPSCAHAHSIAVLLSVTSP 521
            M +   ++ T+HM   + ND A   EL  ++  V       +SI     VT P
Sbjct: 288 SMLEKYHILTTIHMDPVDTND-ALTNELKQVVLGVVKGINKEYSIHDFRIVTGP 340


>tr|B6FKR5|B6FKR5_9CLOT Putative uncharacterized protein
           OS=Clostridium nexile DSM 1787 GN=CLONEX_00711 PE=4 SV=1
          Length = 816

 Score = 33.9 bits (76), Expect = 5.4
 Identities = 18/63 (28%), Positives = 32/63 (50%)
 Frame = +3

Query: 267 MQREIYSHIQRSTDRDVSIAQNQDRMRILNRQMQDLKKVVKTLHMQLTEANDLASIQELA 446
           +Q + YS   R  D +  +AQN+D+  I       L     T+H Q++  N  ++++E  
Sbjct: 9   VQEKYYSKTIRFYDINYQLAQNEDKNAIFENWCDFLNYFDSTIHFQISFINHHSNMKEFE 68

Query: 447 SII 455
           S+I
Sbjct: 69  SVI 71


>tr|A0Y6A9|A0Y6A9_9GAMM Peptide chain release factor 1 (RF-1)
           OS=Alteromonadales bacterium TW-7 GN=ATW7_06058 PE=4
           SV=1
          Length = 361

 Score = 33.9 bits (76), Expect = 5.4
 Identities = 18/68 (26%), Positives = 36/68 (52%), Gaps = 9/68 (13%)
 Frame = +3

Query: 267 MQREIYSHIQRSTDR---------DVSIAQNQDRMRILNRQMQDLKKVVKTLHMQLTEAN 419
           M+  +Y+ ++   +R         D S+  +Q+R R L+++  +L+++VKT         
Sbjct: 1   MKESVYNKLETLVERYEEVQALLSDPSVISDQNRFRGLSKEYSELEEIVKTFLAYQQTKE 60

Query: 420 DLASIQEL 443
           DLAS +E+
Sbjct: 61  DLASAEEM 68


>tr|B6MYG2|B6MYG2_BRAFL Putative uncharacterized protein
           OS=Branchiostoma floridae GN=BRAFLDRAFT_88338 PE=4 SV=1
          Length = 558

 Score = 33.9 bits (76), Expect = 5.4
 Identities = 23/89 (25%), Positives = 44/89 (49%), Gaps = 5/89 (5%)
 Frame = +3

Query: 162 ANRFLEIDRKTIQSIADTALTLQGTHG-----LHCAVYDIMQREIYSHIQRSTDRDVSIA 326
           A R+LEID  T +++      L+         L   ++DI ++E    +QR +++   + 
Sbjct: 274 ARRWLEIDGTTSRNLQTKLEQLEEIQAALERKLGYIIHDIKRKE--EKLQRGSEQVQMLL 331

Query: 327 QNQDRMRILNRQMQDLKKVVKTLHMQLTE 413
           + +DR   L  Q+  + K + +LH +L E
Sbjct: 332 KREDRSNELTFQLYGVNKTISSLHRRLRE 360


>tr|B6MC45|B6MC45_BRAFL Putative uncharacterized protein
           OS=Branchiostoma floridae GN=BRAFLDRAFT_80627 PE=4 SV=1
          Length = 710

 Score = 33.5 bits (75), Expect = 7.0
 Identities = 23/89 (25%), Positives = 46/89 (51%), Gaps = 5/89 (5%)
 Frame = +3

Query: 162 ANRFLEID---RKTIQSIADTALTLQGT--HGLHCAVYDIMQREIYSHIQRSTDRDVSIA 326
           A R+LEID    +T+Q+  +    +Q      L   ++DI ++E    +QR +++   + 
Sbjct: 96  ARRWLEIDGTTSRTLQTKLEQLEEIQAALERKLGYIIHDIKRKE--EKLQRGSEQVQMLL 153

Query: 327 QNQDRMRILNRQMQDLKKVVKTLHMQLTE 413
           + +DR   L  Q+  + K + +LH ++ E
Sbjct: 154 KREDRSNELTFQLYGVNKTISSLHRRIRE 182