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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP911505
Clone id YMU001_000005_G04
Library
Length 351
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000005_G04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CTGCACCAAGACGGTCAGCATACTATCAATGACCCTACGTTGTACATGCGTCCATACTCT
TTGTCGGCACTCATCCGGGTGCTTTGAGGGGGCTTCTATAGTCAGAAGCTCTCGATAGAA
GTCTGGAGCAATGGTGCGTAGCTCCTCTGACTCTATTGCTACGGTCTCGTCAGGTCCCTT
GAGCTGTCTAACCCCAGCTCGAGCATGTCTCTGTGCGGTGATCTTAAAAAACTCCACAAG
ATCGCTCAGTCTCCTAACCTAGCCTTCATTGGGGCGTCTGTCTGTGATGGAAGATCTCGT
GTCTGTGCTCCTCTACCTCTCAGATCTCGTGTTTGGGATGTCCCATCTGAG
■■Homology search results ■■ -
sp_hit_id P35559
Definition sp|P35559|IDE_RAT Insulin-degrading enzyme OS=Rattus norvegicus
Align length 49
Score (bit) 30.8
E-value 2.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911505|Adiantum capillus-veneris mRNA, clone:
YMU001_000005_G04.
         (351 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P35559|IDE_RAT Insulin-degrading enzyme OS=Rattus norvegicus ...    31   2.2  
sp|A9CB34|SFI1_PAPAN Protein SFI1 homolog OS=Papio anubis GN=SFI...    31   2.2  
sp|P63745|Y1826_MYCBO Uncharacterized protein Mb1826 OS=Mycobact...    30   3.7  
sp|P63744|Y1798_MYCTU Uncharacterized protein Rv1798/MT1847 OS=M...    30   3.7  
sp|Q9JHR7|IDE_MOUSE Insulin-degrading enzyme OS=Mus musculus GN=...    30   3.7  
sp|P19875|CXCL2_HUMAN C-X-C motif chemokine 2 OS=Homo sapiens GN...    30   3.7  
sp|Q31CZ4|SYR_PROM9 Arginyl-tRNA synthetase OS=Prochlorococcus m...    29   8.2  
sp|A1WWE4|MNME_HALHL tRNA modification GTPase mnmE OS=Halorhodos...    29   8.2  
sp|Q9Y468|LMBL1_HUMAN Lethal(3)malignant brain tumor-like protei...    29   8.2  
sp|Q24K02|IDE_BOVIN Insulin-degrading enzyme OS=Bos taurus GN=ID...    29   8.2  

>sp|P35559|IDE_RAT Insulin-degrading enzyme OS=Rattus norvegicus
            GN=Ide PE=1 SV=1
          Length = 1019

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
 Frame = -1

Query: 156  IESEELRTIAPD----FYRELLTIEAPSKHPDECRQRVWTHVQRRVIDS 22
            IE   L+T++ D    FY+E+L ++AP +H      +V  HV  R +DS
Sbjct: 923  IEVAYLKTLSKDDIIKFYKEMLAVDAPRRH------KVSVHVLAREMDS 965


>sp|A9CB34|SFI1_PAPAN Protein SFI1 homolog OS=Papio anubis GN=SFI1
           PE=3 SV=2
          Length = 1235

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = -3

Query: 196 WG*TAQGT*RDRSNRVRGATHHCSRLLSRA-SDYRSPLKAPG*VPTKSMDA 47
           W  +AQG   +R+ RVR A  H ++LL RA S +R  L   G    K M A
Sbjct: 585 WRESAQGLRAERTGRVRAAEFHVAQLLRRAWSQWRECLAVRGAERRKLMRA 635


>sp|P63745|Y1826_MYCBO Uncharacterized protein Mb1826
           OS=Mycobacterium bovis GN=Mb1826 PE=3 SV=1
          Length = 610

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = -1

Query: 270 NEG*VRRLSDLVEFFKITAQRHARAGVRQLKGPDETVAIESEELRTIAPDF 118
           N+G  RR S ++EFF  T Q      + QL G +    I  EE + + P +
Sbjct: 473 NQGLRRRFSTVIEFFSYTPQE--LIALTQLMGRENEDVITEEESQVLLPSY 521


>sp|P63744|Y1798_MYCTU Uncharacterized protein Rv1798/MT1847
           OS=Mycobacterium tuberculosis GN=Rv1798 PE=3 SV=1
          Length = 610

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = -1

Query: 270 NEG*VRRLSDLVEFFKITAQRHARAGVRQLKGPDETVAIESEELRTIAPDF 118
           N+G  RR S ++EFF  T Q      + QL G +    I  EE + + P +
Sbjct: 473 NQGLRRRFSTVIEFFSYTPQE--LIALTQLMGRENEDVITEEESQVLLPSY 521


>sp|Q9JHR7|IDE_MOUSE Insulin-degrading enzyme OS=Mus musculus GN=Ide
            PE=2 SV=1
          Length = 1019

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
 Frame = -1

Query: 156  IESEELRTIAPD----FYRELLTIEAPSKHPDECRQRVWTHVQRRVIDS 22
            IE   L+T+  D    FY+E+L ++AP +H      +V  HV  R +DS
Sbjct: 923  IEVAYLKTLTKDDIIRFYQEMLAVDAPRRH------KVSVHVLAREMDS 965


>sp|P19875|CXCL2_HUMAN C-X-C motif chemokine 2 OS=Homo sapiens
           GN=CXCL2 PE=1 SV=1
          Length = 107

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
 Frame = +2

Query: 23  LSMTLRCTCVHTLCRHSSGCFEGASI--VRSSR*KSGAMVRSSSDSIATVSSGPLSCLTP 196
           L+  LRC C+ TL        +G  +  ++S + KS     + ++ IAT+ +G  +CL P
Sbjct: 37  LATELRCQCLQTL--------QGIHLKNIQSVKVKSPGPHCAQTEVIATLKNGQKACLNP 88

Query: 197 ARACLCAVILK 229
           A   +  +I K
Sbjct: 89  ASPMVKKIIEK 99


>sp|Q31CZ4|SYR_PROM9 Arginyl-tRNA synthetase OS=Prochlorococcus
           marinus (strain MIT 9312) GN=argS PE=3 SV=1
          Length = 604

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 13/41 (31%), Positives = 25/41 (60%)
 Frame = -1

Query: 252 RLSDLVEFFKITAQRHARAGVRQLKGPDETVAIESEELRTI 130
           ++SDLVEF+K + +R       Q +  +E V ++S + ++I
Sbjct: 208 KISDLVEFYKASKKRFDNESEFQKRSREEVVKLQSGDSKSI 248


>sp|A1WWE4|MNME_HALHL tRNA modification GTPase mnmE
           OS=Halorhodospira halophila (strain DSM 244 / SL1)
           GN=mnmE PE=3 SV=1
          Length = 469

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 4/76 (5%)
 Frame = -1

Query: 243 DLVEFFKITAQRHAR----AGVRQLKGPDETVAIESEELRTIAPDFYRELLTIEAPSKHP 76
           D+V  +     RHA     AG+R  +  DE  A  +   R  A +    L+ IEA     
Sbjct: 267 DVVRQWAALGSRHAELLDTAGLRDAEAQDEIEAEGARRARAAASEADLLLVVIEAGKTLD 326

Query: 75  DECRQRVWTHVQRRVI 28
           +E R R+     R V+
Sbjct: 327 EELRARIAEQAPRPVV 342


>sp|Q9Y468|LMBL1_HUMAN Lethal(3)malignant brain tumor-like protein
           OS=Homo sapiens GN=L3MBTL PE=1 SV=2
          Length = 772

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 16/54 (29%), Positives = 23/54 (42%)
 Frame = -1

Query: 213 QRHARAGVRQLKGPDETVAIESEELRTIAPDFYRELLTIEAPSKHPDECRQRVW 52
           + H R G      P +   I  E+ +T+ PD   + L + A S HPD      W
Sbjct: 614 RHHGRIG-----RPPKYRKIPQEDFQTLTPDVVHQSLFMSALSAHPDRSLSVCW 662


>sp|Q24K02|IDE_BOVIN Insulin-degrading enzyme OS=Bos taurus GN=IDE
            PE=2 SV=1
          Length = 1019

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
 Frame = -1

Query: 156  IESEELRTIAPD----FYRELLTIEAPSKHPDECRQRVWTHVQRRVIDS 22
            IE   L+T+  +    FY+E+L ++AP +H      +V  HV  R +DS
Sbjct: 923  IEVAYLKTLTKEDIIKFYKEMLAVDAPRRH------KVSVHVLAREMDS 965
tr_hit_id B6LDW2
Definition tr|B6LDW2|B6LDW2_BRAFL Putative uncharacterized protein OS=Branchiostoma floridae
Align length 70
Score (bit) 33.9
E-value 4.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911505|Adiantum capillus-veneris mRNA, clone:
YMU001_000005_G04.
         (351 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B6LDW2|B6LDW2_BRAFL Putative uncharacterized protein OS=Branc...    34   4.1  
tr|B7GPV0|B7GPV0_BIFLO Aminotransferase, class I and II OS=Bifid...    33   5.4  
tr|Q9SJ83|Q9SJ83_ARATH Putative non-LTR retroelement reverse tra...    33   5.4  

>tr|B6LDW2|B6LDW2_BRAFL Putative uncharacterized protein
           OS=Branchiostoma floridae GN=BRAFLDRAFT_69403 PE=4 SV=1
          Length = 526

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 23/70 (32%), Positives = 31/70 (44%), Gaps = 6/70 (8%)
 Frame = -1

Query: 201 RAGVRQLKGPDETVAIESEELRTIAPDFYRELLTI---EAPSKHPDECRQRVW---THVQ 40
           R GV +   PD   ++   E   + P  Y E +T+   E P    DE RQR W    H+Q
Sbjct: 149 RFGVAKQPEPDSPESVVCREYAQLEPQLYNERITVSLSEVPPSFSDEARQR-WQAVRHLQ 207

Query: 39  RRVIDSMLTV 10
            R  D  L +
Sbjct: 208 LRFYDMDLVL 217


>tr|B7GPV0|B7GPV0_BIFLO Aminotransferase, class I and II
           OS=Bifidobacterium longum subsp. infantis ATCC 15697
           GN=Blon_0726 PE=4 SV=1
          Length = 421

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 17/38 (44%), Positives = 21/38 (55%)
 Frame = -1

Query: 231 FFKITAQRHARAGVRQLKGPDETVAIESEELRTIAPDF 118
           F K+ A  HA+ G  Q+ GPDE VA     L  IA D+
Sbjct: 259 FSKMLAAPHAKVGWIQVSGPDEDVAEAQRRLDVIADDY 296


>tr|Q9SJ83|Q9SJ83_ARATH Putative non-LTR retroelement reverse
           transcriptase OS=Arabidopsis thaliana GN=At2g04760 PE=2
           SV=1
          Length = 631

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 15/44 (34%), Positives = 26/44 (59%)
 Frame = -1

Query: 231 FFKITAQRHARAGVRQLKGPDETVAIESEELRTIAPDFYRELLT 100
           F K    R  +  +R++KGP++ +   SEE++  A  F++E LT
Sbjct: 20  FHKAAQVRKMQNSIREIKGPNDVLLQTSEEIKGEAVRFFKEFLT 63