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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP911510
Clone id YMU001_000005_G09
Library
Length 573
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000005_G09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
ACCATACGTGGACAGCAGATCGAGAGTGGCTATGCTCTGCACCCTCTTTCCAATCATGGT
TTCCACATTATCCATTCTCCTTGCACTATTCTTCCTTTCGTGAGGGTACGTACTTCTCAA
ACTCGCTGCACCTATTTGGTATCGTTTTGATCAGAGTATGGTACATGCTATATTCTATTG
TCTCATGGGCGACTACCATTAGTCTATACCTTACACTTTCTTTTAAGGGTGATTCTGGGC
TTATCTTGAATTCATCAGTCCAACTGCACCTCAATCGACTGCTCGTCCACGACGTTCATA
TACATCCATCGGGTACCCCTATGTACCGCTGAATCGCCCAACAAAAGCTCGATAGCTCTG
CACGGCCACTTATAAACCCCAAGCATTTGTTCCAGGTTGCCCTTGCATACTTTGTCACCT
CGCTCGGTGGTATTGCTCGGGGATATTGCGAAAAACTGAAGATGAACCATAAAAAGTACG
TGGTGGGCATCGTAGATCCCATCTTGTGACTTCGATTTGTAATTGTATACTTATCACACA
ACTACCTCATTAAGGACTATGATGATTGTGGCA
■■Homology search results ■■ -
sp_hit_id Q10429
Definition sp|Q10429|CND3_SCHPO Condensin complex subunit 3 OS=Schizosaccharomyces pombe
Align length 85
Score (bit) 35.0
E-value 0.26
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911510|Adiantum capillus-veneris mRNA, clone:
YMU001_000005_G09.
         (573 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q10429|CND3_SCHPO Condensin complex subunit 3 OS=Schizosaccha...    35   0.26 
sp|P27914|POLG_DEN2T Genome polyprotein (Fragments) OS=Dengue vi...    32   1.7  
sp|Q9WDA6|POLG_DEN2Q Genome polyprotein OS=Dengue virus type 2 (...    32   1.7  
sp|P12823|POLG_DEN2P Genome polyprotein OS=Dengue virus type 2 (...    32   1.7  
sp|P14340|POLG_DEN2N Genome polyprotein OS=Dengue virus type 2 (...    32   1.7  
sp|P14337|POLG_DEN28 Genome polyprotein OS=Dengue virus type 2 (...    32   1.7  
sp|P29991|POLG_DEN27 Genome polyprotein OS=Dengue virus type 2 (...    32   1.7  
sp|P29990|POLG_DEN26 Genome polyprotein OS=Dengue virus type 2 (...    32   1.7  
sp|P07564|POLG_DEN2J Genome polyprotein OS=Dengue virus type 2 (...    31   3.8  
sp|Q5UCB8|POLG_DEN4S Genome polyprotein OS=Dengue virus type 4 (...    31   5.0  
sp|Q2YHF2|POLG_DEN4H Genome polyprotein OS=Dengue virus type 4 (...    31   5.0  
sp|P09866|POLG_DEN4D Genome polyprotein OS=Dengue virus type 4 (...    31   5.0  
sp|P42333|BCRB_BACLI Bacitracin transport permease protein BCRB ...    31   5.0  
sp|Q9V8R9|41_DROME Protein 4.1 homolog OS=Drosophila melanogaste...    30   8.5  

>sp|Q10429|CND3_SCHPO Condensin complex subunit 3
           OS=Schizosaccharomyces pombe GN=cnd3 PE=1 SV=1
          Length = 875

 Score = 35.0 bits (79), Expect = 0.26
 Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 9/85 (10%)
 Frame = +3

Query: 57  WFPHYPFSLHYSSFREGTYFSNSL-HLFGI--------VLIRVWYMLYSIVSWATTISLY 209
           +FP Y F  H + +R  T F ++L  L  I        V + + ++   ++ W     LY
Sbjct: 665 FFPVYAFGAHENQWRIATIFCDALLSLLEIYRDLDEDDVQLSIGHIAQQMLDWTDNEKLY 724

Query: 210 LTLSFKGDSGLILNSSVQLHLNRLL 284
              +  GD  + LN +V LHL  ++
Sbjct: 725 ERKTQTGDDYIALNHNVHLHLANMI 749


>sp|P27914|POLG_DEN2T Genome polyprotein (Fragments) OS=Dengue virus
           type 2 (strain Tonga/EKB194/1974) PE=1 SV=1
          Length = 1683

 Score = 32.3 bits (72), Expect = 1.7
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 15/50 (30%)
 Frame = -3

Query: 325 YIGV----PDGCI*TSWTSSRLRC-----------SWTDEFKISPESPLK 221
           Y+GV      GC+  SW +  L+C           +WT+++K  PESP K
Sbjct: 488 YLGVMVQADSGCV-VSWKNKELKCGSGIFVTDNVHTWTEQYKFQPESPSK 536


>sp|Q9WDA6|POLG_DEN2Q Genome polyprotein OS=Dengue virus type 2
           (strain Peru/IQT2913/1996) PE=3 SV=1
          Length = 3391

 Score = 32.3 bits (72), Expect = 1.7
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 15/50 (30%)
 Frame = -3

Query: 325 YIGV----PDGCI*TSWTSSRLRC-----------SWTDEFKISPESPLK 221
           Y+GV      GC+  SW +  L+C           +WT+++K  PESP K
Sbjct: 768 YLGVMVQADSGCV-VSWKNKELKCGSGIFVTDNVHTWTEQYKFQPESPSK 816


>sp|P12823|POLG_DEN2P Genome polyprotein OS=Dengue virus type 2
           (strain Puerto Rico/PR159-S1/1969) PE=1 SV=1
          Length = 3388

 Score = 32.3 bits (72), Expect = 1.7
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 15/50 (30%)
 Frame = -3

Query: 325 YIGV----PDGCI*TSWTSSRLRC-----------SWTDEFKISPESPLK 221
           Y+GV      GC+  SW +  L+C           +WT+++K  PESP K
Sbjct: 768 YLGVMVQADSGCV-VSWKNKELKCGSGIFVTDNVHTWTEQYKFQPESPSK 816


>sp|P14340|POLG_DEN2N Genome polyprotein OS=Dengue virus type 2
           (strain Thailand/NGS-C/1944) PE=1 SV=2
          Length = 3391

 Score = 32.3 bits (72), Expect = 1.7
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 15/50 (30%)
 Frame = -3

Query: 325 YIGV----PDGCI*TSWTSSRLRC-----------SWTDEFKISPESPLK 221
           Y+GV      GC+  SW +  L+C           +WT+++K  PESP K
Sbjct: 768 YLGVMVQADSGCV-VSWKNKELKCGSGIFITDNVHTWTEQYKFQPESPSK 816


>sp|P14337|POLG_DEN28 Genome polyprotein OS=Dengue virus type 2
           (isolate Thailand/0168/1979) PE=1 SV=2
          Length = 3391

 Score = 32.3 bits (72), Expect = 1.7
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 15/50 (30%)
 Frame = -3

Query: 325 YIGV----PDGCI*TSWTSSRLRC-----------SWTDEFKISPESPLK 221
           Y+GV      GC+  SW +  L+C           +WT+++K  PESP K
Sbjct: 768 YLGVMVQADSGCV-VSWKNKELKCGSGIFITDNVHTWTEQYKFQPESPSK 816


>sp|P29991|POLG_DEN27 Genome polyprotein OS=Dengue virus type 2
           (strain 16681-PDK53) PE=3 SV=1
          Length = 3391

 Score = 32.3 bits (72), Expect = 1.7
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 15/50 (30%)
 Frame = -3

Query: 325 YIGV----PDGCI*TSWTSSRLRC-----------SWTDEFKISPESPLK 221
           Y+GV      GC+  SW +  L+C           +WT+++K  PESP K
Sbjct: 768 YLGVMVQADSGCV-VSWKNKELKCGSGIFITDNVHTWTEQYKFQPESPSK 816


>sp|P29990|POLG_DEN26 Genome polyprotein OS=Dengue virus type 2
           (strain Thailand/16681/1984) PE=1 SV=1
          Length = 3391

 Score = 32.3 bits (72), Expect = 1.7
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 15/50 (30%)
 Frame = -3

Query: 325 YIGV----PDGCI*TSWTSSRLRC-----------SWTDEFKISPESPLK 221
           Y+GV      GC+  SW +  L+C           +WT+++K  PESP K
Sbjct: 768 YLGVMVQADSGCV-VSWKNKELKCGSGIFITDNVHTWTEQYKFQPESPSK 816


>sp|P07564|POLG_DEN2J Genome polyprotein OS=Dengue virus type 2
           (strain Jamaica/1409/1983) PE=3 SV=2
          Length = 3391

 Score = 31.2 bits (69), Expect = 3.8
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 11/40 (27%)
 Frame = -3

Query: 307 GCI*TSWTSSRLRC-----------SWTDEFKISPESPLK 221
           GC+  SW +  L+C           +WT+++K  PESP K
Sbjct: 778 GCV-VSWKNKELKCGSGIFITDNVHTWTEQYKFQPESPSK 816


>sp|Q5UCB8|POLG_DEN4S Genome polyprotein OS=Dengue virus type 4
           (strain Singapore/8976/1995) PE=3 SV=1
          Length = 3387

 Score = 30.8 bits (68), Expect = 5.0
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 11/40 (27%)
 Frame = -3

Query: 307 GCI*TSWTSSRLRC-----------SWTDEFKISPESPLK 221
           GC+  SW+   L+C           +WT+++K  PESP +
Sbjct: 777 GCV-VSWSGKELKCGSGIFVADNVHTWTEQYKFQPESPAR 815
tr_hit_id A0B5M7
Definition tr|A0B5M7|A0B5M7_METTP Metal-binding protein-like OS=Methanosaeta thermophila (strain DSM 6194 / PT)
Align length 36
Score (bit) 37.4
E-value 0.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911510|Adiantum capillus-veneris mRNA, clone:
YMU001_000005_G09.
         (573 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A0B5M7|A0B5M7_METTP Metal-binding protein-like OS=Methanosaet...    37   0.60 
tr|A1DZ87|A1DZ87_9FLAV Polyprotein (Fragment) OS=Dengue virus 2 ...    34   5.0  
tr|Q87PV7|Q87PV7_VIBPA Putative VgrG protein OS=Vibrio parahaemo...    34   5.0  
tr|Q8QTW6|Q8QTW6_9FLAV Polyprotein (Fragment) OS=Dengue virus 3 ...    34   6.6  
tr|Q8I1T3|Q8I1T3_PLAF7 Nonclathrin coat protein zeta2-cop-relate...    34   6.6  
tr|B6VJ72|B6VJ72_9FLAV Polyprotein OS=Dengue virus 2 PE=4 SV=1         33   8.6  
tr|A9TEL3|A9TEL3_PHYPA Predicted protein OS=Physcomitrella paten...    33   8.6  

>tr|A0B5M7|A0B5M7_METTP Metal-binding protein-like OS=Methanosaeta
           thermophila (strain DSM 6194 / PT) GN=Mthe_0203 PE=4
           SV=1
          Length = 205

 Score = 37.4 bits (85), Expect = 0.60
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = -2

Query: 116 EVRTLTKGRIVQGEWIMWKP*LERGCRA*PLSICCP 9
           ++R ++ G +V GEW+ WK     GCRA    +CCP
Sbjct: 24  DIRLISTGIVVVGEWVRWK--CRYGCRAYGKHLCCP 57


>tr|A1DZ87|A1DZ87_9FLAV Polyprotein (Fragment) OS=Dengue virus 2
           PE=4 SV=1
          Length = 80

 Score = 34.3 bits (77), Expect = 5.0
 Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 15/53 (28%)
 Frame = -3

Query: 334 IQRYIGV----PDGCI*TSWTSSRLRC-----------SWTDEFKISPESPLK 221
           I  Y+GV      GCI  SW S  L+C           +WT+++K  PESP K
Sbjct: 27  ITLYLGVMVQADSGCI-VSWKSKELKCGSGIFVTDNVHTWTEQYKFQPESPSK 78


>tr|Q87PV7|Q87PV7_VIBPA Putative VgrG protein OS=Vibrio
           parahaemolyticus GN=VP1394 PE=4 SV=1
          Length = 692

 Score = 34.3 bits (77), Expect = 5.0
 Identities = 16/48 (33%), Positives = 28/48 (58%)
 Frame = -2

Query: 401 GNLEQMLGVYKWPCRAIELLLGDSAVHRGTRWMYMNVVDEQSIEVQLD 258
           G+L+Q L  + +P R ++ ++G     R T WM+ ++VD Q +E   D
Sbjct: 252 GDLDQDLKQFDYPGRYVDPVMGQV---RTTEWMFEHIVDNQQVEASSD 296


>tr|Q8QTW6|Q8QTW6_9FLAV Polyprotein (Fragment) OS=Dengue virus 3
           PE=4 SV=1
          Length = 80

 Score = 33.9 bits (76), Expect = 6.6
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 15/54 (27%)
 Frame = -3

Query: 337 AIQRYIGV----PDGCI*TSWTSSRLRC-----------SWTDEFKISPESPLK 221
           A+  Y+GV      GC+  SW +  L+C           +WT+++K  PESP K
Sbjct: 26  AVTLYLGVMVQADSGCV-VSWKNKELKCGSGIFITDNVHTWTEQYKFQPESPSK 78


>tr|Q8I1T3|Q8I1T3_PLAF7 Nonclathrin coat protein zeta2-cop-related
           protein, putative OS=Plasmodium falciparum (isolate 3D7)
           GN=PFD0745c PE=4 SV=1
          Length = 208

 Score = 33.9 bits (76), Expect = 6.6
 Identities = 17/49 (34%), Positives = 29/49 (59%)
 Frame = +3

Query: 201 SLYLTLSFKGDSGLILNSSVQLHLNRLLVHDVHIHPSGTPMYR*IAQQK 347
           S+YL L    DSG+I+ +S  + +NRL +++  I    TP+ + I+  K
Sbjct: 149 SVYLILDEIADSGIIMETSASVIINRLYMNESDIQEQHTPLNQAISSAK 197


>tr|B6VJ72|B6VJ72_9FLAV Polyprotein OS=Dengue virus 2 PE=4 SV=1
          Length = 3391

 Score = 33.5 bits (75), Expect = 8.6
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 15/50 (30%)
 Frame = -3

Query: 325 YIGV----PDGCI*TSWTSSRLRC-----------SWTDEFKISPESPLK 221
           Y+GV      GC+  SW S  L+C           +WT+++K  PESP K
Sbjct: 768 YLGVMVQADSGCV-VSWKSKELKCGSGIFITDNVHTWTEQYKFQPESPSK 816


>tr|A9TEL3|A9TEL3_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_144394 PE=4 SV=1
          Length = 415

 Score = 33.5 bits (75), Expect = 8.6
 Identities = 24/67 (35%), Positives = 36/67 (53%)
 Frame = -3

Query: 283 SSRLRCSWTDEFKISPESPLKESVRYRLMVVAHETIEYSMYHTLIKTIPNRCSEFEKYVP 104
           S+ LR  W ++FKI  E P  +++  RLM    E+++ S Y   I T+     EFE +V 
Sbjct: 266 SNTLRPVWNEDFKIEVEDPESQALTLRLM--DDESVQKSEY---IGTVQLAIKEFEPHV- 319

Query: 103 SRKEE*C 83
            +KE  C
Sbjct: 320 -KKELWC 325