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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP911521
Clone id YMU001_000005_H09
Library
Length 515
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000005_H09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TCAAAAAGTTGTGGAAGAGGAGGTACATGCTGCATGGGAACTTTGTGAGAGTTTTCTGAG
TGGACCTGTTAAAACTCTTGGATTACACTTAAATCAGCCCAATTCCATTTTGCAACCTTA
CCTCTCACAATTGAGCCTGTACTTCAGTAAGGGTCTCAAGTACGGGATCAATCGTCACCT
TCAGGTTATTTTGGGAAACAGTTGCAACGCAAAATATGGAAATTACTGCAGAGGAATGAT
TTTCTGGCATCGAAAGAGAGCAGGGAAGTTGTTTGGTTCTTGGCTTCCGCACTGCTGATT
TTACCTCTATATGGAGTTCTACTGTTGTCTTCATTCTTGGGCAAGAGAAGGCGACCATTG
GTGGCGCGTCGGTACAGGCGCGGACAGGGAGTACATTGGAGGCATGAACAAAGACAACCT
TTGGTGCTTTAACTAGTTTGGTGCTCCAACTTTAGAAGCATCTTATTCTTTCATTTTCAA
TGTGGATATATTCTTGTTTTGACTTTTTATGAGCT
■■Homology search results ■■ -
sp_hit_id Q5LTL1
Definition sp|Q5LTL1|SYM_SILPO Methionyl-tRNA synthetase OS=Silicibacter pomeroyi
Align length 61
Score (bit) 34.7
E-value 0.27
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911521|Adiantum capillus-veneris mRNA, clone:
YMU001_000005_H09.
         (515 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q5LTL1|SYM_SILPO Methionyl-tRNA synthetase OS=Silicibacter po...    35   0.27 
sp|Q28MK0|SYM_JANSC Methionyl-tRNA synthetase OS=Jannaschia sp. ...    33   0.79 
sp|Q166L9|SYM_ROSDO Methionyl-tRNA synthetase OS=Roseobacter den...    32   1.3  
sp|P08356|GH_HHV1E Glycoprotein H OS=Human herpesvirus 1 (strain...    32   2.3  
sp|P06477|GH_HHV11 Glycoprotein H OS=Human herpesvirus 1 (strain...    32   2.3  
sp|B0T3J0|SYM_CAUSK Methionyl-tRNA synthetase OS=Caulobacter sp....    31   3.0  
sp|O35291|RNAS2_MOUSE Non-secretory ribonuclease OS=Mus musculus...    31   3.0  
sp|P28697|HTGA_ECOLI Putative uncharacterized protein htgA OS=Es...    31   3.0  
sp|Q1GEI7|SYM_SILST Methionyl-tRNA synthetase OS=Silicibacter sp...    30   5.1  
sp|Q9A884|SYM_CAUCR Methionyl-tRNA synthetase OS=Caulobacter cre...    30   5.1  
sp|Q4V9P9|NOL11_DANRE Nucleolar protein 11-like OS=Danio rerio G...    30   6.7  
sp|Q7SY23|AL4A1_DANRE Delta-1-pyrroline-5-carboxylate dehydrogen...    30   8.7  

>sp|Q5LTL1|SYM_SILPO Methionyl-tRNA synthetase OS=Silicibacter
           pomeroyi GN=metG PE=3 SV=1
          Length = 572

 Score = 34.7 bits (78), Expect = 0.27
 Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 8/61 (13%)
 Frame = +2

Query: 263 GKLFGSWLPHC*FYLYMEFYCCLHSWAR-------EGDHWWRVGTGADR-EYIGGMNKDN 418
           GK+F  W     F   +E+  C   WA        E + WWR   GAD   Y+  M KDN
Sbjct: 255 GKVFYVW-----FDAPIEYIACAGEWAEAHGKSDAEWERWWRTDKGADDVRYVQFMGKDN 309

Query: 419 L 421
           +
Sbjct: 310 V 310


>sp|Q28MK0|SYM_JANSC Methionyl-tRNA synthetase OS=Jannaschia sp.
           (strain CCS1) GN=metG PE=3 SV=1
          Length = 570

 Score = 33.1 bits (74), Expect = 0.79
 Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 6/59 (10%)
 Frame = +2

Query: 263 GKLFGSWLPHC*FYLYMEFYCCLHSWAREG-----DHWWRVGTGADR-EYIGGMNKDNL 421
           GK+F  W     F   +E+  C      EG     + WWRV  GAD   Y+  M KDN+
Sbjct: 258 GKVFYVW-----FDAPIEYIACAAEAVEEGSISDWERWWRVDKGADDVRYVQFMGKDNV 311


>sp|Q166L9|SYM_ROSDO Methionyl-tRNA synthetase OS=Roseobacter
           denitrificans (strain ATCC 33942 / OCh 114) GN=metG PE=3
           SV=1
          Length = 572

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 8/61 (13%)
 Frame = +2

Query: 263 GKLFGSWLPHC*FYLYMEFYCCLHSWAR-------EGDHWWRVGTGADR-EYIGGMNKDN 418
           GK+F  W     F   +E+  C   WA        + + WWR   GAD   Y   M KDN
Sbjct: 255 GKVFYVW-----FDAPIEYIACASEWAEANNLEQSDWERWWRTDKGADDVRYTQFMGKDN 309

Query: 419 L 421
           +
Sbjct: 310 V 310


>sp|P08356|GH_HHV1E Glycoprotein H OS=Human herpesvirus 1 (strain
           HFEM) GN=GH PE=3 SV=1
          Length = 838

 Score = 31.6 bits (70), Expect = 2.3
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = +2

Query: 329 LHSWAREGDHWWRVGTGADREYIGGMNKDNLWCFN 433
           +H W  + D W+  G G DR Y    N   LW  N
Sbjct: 20  VHDWTEQTDPWFLDGLGMDRMYWRDTNTGRLWLPN 54


>sp|P06477|GH_HHV11 Glycoprotein H OS=Human herpesvirus 1 (strain
           17) GN=GH PE=3 SV=1
          Length = 838

 Score = 31.6 bits (70), Expect = 2.3
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = +2

Query: 329 LHSWAREGDHWWRVGTGADREYIGGMNKDNLWCFN 433
           +H W  + D W+  G G DR Y    N   LW  N
Sbjct: 20  VHDWTEQTDPWFLDGLGMDRMYWRDTNTGRLWLPN 54


>sp|B0T3J0|SYM_CAUSK Methionyl-tRNA synthetase OS=Caulobacter sp.
           (strain K31) GN=metG PE=3 SV=1
          Length = 569

 Score = 31.2 bits (69), Expect = 3.0
 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 10/51 (19%)
 Frame = +2

Query: 299 FYLY----MEFYCCLHSWAREG-----DHWWRVGTGADR-EYIGGMNKDNL 421
           FY++    +E+      WA EG       WWR   GAD   Y+  M KDN+
Sbjct: 256 FYVWFDAPIEYIAATQEWADEGAGRDWKSWWRTDEGADDVRYVQFMGKDNV 306


>sp|O35291|RNAS2_MOUSE Non-secretory ribonuclease OS=Mus musculus
           GN=Rnase2 PE=2 SV=1
          Length = 155

 Score = 31.2 bits (69), Expect = 3.0
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +3

Query: 102 IPFCNLTSHN*ACTSVRVSSTGSIVTFRLFWETVATQN 215
           I FCNLT     CT  R  +TGS+  +R+  E    Q+
Sbjct: 103 ITFCNLTMPTRICTQCRYQTTGSVKYYRVACENRTPQD 140


>sp|P28697|HTGA_ECOLI Putative uncharacterized protein htgA
           OS=Escherichia coli (strain K12) GN=htgA PE=5 SV=2
          Length = 196

 Score = 31.2 bits (69), Expect = 3.0
 Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 6/70 (8%)
 Frame = -1

Query: 389 PCPRLYRRATNGRLLLPKNEDNSRTPYRGK---ISSAEAKNQTTSLLSFDARKSFLCSN- 222
           PCP     A   ++ +   E    TP+      ISS  + + + +L S   R S LCS+ 
Sbjct: 23  PCPSTLIAAWVRKMRVSWLESKCDTPFANNLSFISSGSSSSSSFTLASTACRNSCLCSSS 82

Query: 221 --FHILRCNC 198
             F +LR NC
Sbjct: 83  IFFQVLRRNC 92


>sp|Q1GEI7|SYM_SILST Methionyl-tRNA synthetase OS=Silicibacter sp.
           (strain TM1040) GN=metG PE=3 SV=2
          Length = 573

 Score = 30.4 bits (67), Expect = 5.1
 Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 8/61 (13%)
 Frame = +2

Query: 263 GKLFGSWLPHC*FYLYMEFYCCLHSWAR-------EGDHWWRVGTGADR-EYIGGMNKDN 418
           GK+F  W     F   +E+      WA        + + WWR   GAD  +Y+  M KDN
Sbjct: 255 GKVFYVW-----FDAPIEYIAAAGEWAEAHGKTDADWERWWRTDKGADDVKYVQFMGKDN 309

Query: 419 L 421
           +
Sbjct: 310 V 310


>sp|Q9A884|SYM_CAUCR Methionyl-tRNA synthetase OS=Caulobacter
           crescentus GN=metG PE=3 SV=1
          Length = 569

 Score = 30.4 bits (67), Expect = 5.1
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 10/51 (19%)
 Frame = +2

Query: 299 FYLY----MEFYCCLHSWA-----REGDHWWRVGTGADR-EYIGGMNKDNL 421
           FY++    +E+      WA     R+   WWR   GAD   Y+  M KDN+
Sbjct: 256 FYVWFDAPIEYIAATQEWAEGSPDRDWKRWWRTDAGADDVRYVQFMGKDNV 306
tr_hit_id Q82Y40
Definition tr|Q82Y40|Q82Y40_NITEU Sensor protein OS=Nitrosomonas europaea
Align length 57
Score (bit) 37.0
E-value 0.58
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911521|Adiantum capillus-veneris mRNA, clone:
YMU001_000005_H09.
         (515 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q82Y40|Q82Y40_NITEU Sensor protein OS=Nitrosomonas europaea G...    37   0.58 
tr|A6RC25|A6RC25_AJECN Putative uncharacterized protein OS=Ajell...    35   1.7  
tr|Q0SL04|Q0SL04_BORAP Putative uncharacterized protein OS=Borre...    34   3.7  
tr|B5RS80|B5RS80_BORRA PF32 plasmid partition protein OS=Borreli...    34   3.7  
tr|B8F1X5|B8F1X5_BORGA CobQ/CobB/MinD/ParA nucleotide binding do...    34   3.7  
tr|B8DXF9|B8DXF9_BORAF PF-32 protein OS=Borrelia afzelii ACA-1 G...    34   3.7  
tr|A3VSZ1|A3VSZ1_9PROT Methionyl-tRNA synthetase OS=Parvularcula...    34   4.9  
tr|Q643C9|Q643C9_STRHY Polyprenyl phospho-mannosyltransferase Mp...    33   6.4  
tr|Q3S3F5|Q3S3F5_BORHE BBR33-like protein OS=Borrelia hermsii PE...    33   6.4  
tr|B7G5J2|B7G5J2_PHATR Predicted protein OS=Phaeodactylum tricor...    33   6.4  
tr|A9RJS5|A9RJS5_PHYPA Predicted protein (Fragment) OS=Physcomit...    33   6.4  
tr|Q11X12|Q11X12_CYTH3 CHU large protein; uncharacterized OS=Cyt...    33   8.3  
tr|B7RH05|B7RH05_9RHOB Methionyl-tRNA synthetase OS=Roseobacter ...    33   8.3  
tr|A9HSQ5|A9HSQ5_9RHOB Methionyl-tRNA synthetase OS=Roseobacter ...    33   8.3  
tr|A3JP32|A3JP32_9RHOB Methionyl-tRNA synthetase OS=Rhodobactera...    33   8.3  
tr|A9VE26|A9VE26_MONBE Predicted protein OS=Monosiga brevicollis...    33   8.3  
tr|Q0UH06|Q0UH06_PHANO Putative uncharacterized protein OS=Phaeo...    33   8.3  

>tr|Q82Y40|Q82Y40_NITEU Sensor protein OS=Nitrosomonas europaea
           GN=NE0049 PE=3 SV=1
          Length = 1229

 Score = 37.0 bits (84), Expect = 0.58
 Identities = 17/57 (29%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
 Frame = -2

Query: 313 HIEVKSAVRKPRTKQLPCSLSMPENHSSAVIS--IFCVATVSQNNLKVTIDPVLETL 149
           H+E + A R  R +QL   L++ E  + +V+   + CV T  +  + ++++PV+E L
Sbjct: 392 HLEARVAERTARLEQLNAELAIKEEETRSVVEHMVDCVVTTDERGVMLSVNPVMEKL 448


>tr|A6RC25|A6RC25_AJECN Putative uncharacterized protein
           OS=Ajellomyces capsulata (strain NAm1 / WU24)
           GN=HCAG_07183 PE=3 SV=1
          Length = 1248

 Score = 35.4 bits (80), Expect = 1.7
 Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
 Frame = -1

Query: 362 TNGRLLLPKNEDNSRTPYRGKISSAEAKNQTTSLLSFDARKSFLCSNFHILRCNCFPK-- 189
           T G  LLP N+  SR P+ G I+       T +L +F+A    + + FH L+ +C P+  
Sbjct: 554 TYGGYLLPLNQLTSRVPWVGWIAVGRPNYTTPALYAFEA---CMATEFHNLQLSCEPRSI 610

Query: 188 *PEGDD 171
            P G D
Sbjct: 611 IPSGPD 616


>tr|Q0SL04|Q0SL04_BORAP Putative uncharacterized protein OS=Borrelia
           afzelii (strain PKo) GN=BAPKO_5522 PE=4 SV=1
          Length = 253

 Score = 34.3 bits (77), Expect = 3.7
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 7/58 (12%)
 Frame = +2

Query: 104 SILQPYLSQLSLYFSKGLKYGI-------NRHLQVILGNSCNAKYGNYCRGMIFWHRK 256
           SIL  Y+ ++S+Y  K +   I       NR+    + NS   KYG Y +G + ++ K
Sbjct: 165 SILMKYIEKVSMYLDKDIDISIIENQFMKNRNTFKSIENSIKDKYGKYIKGKVHFYNK 222


>tr|B5RS80|B5RS80_BORRA PF32 plasmid partition protein OS=Borrelia
           recurrentis (strain A1) GN=pf32 PE=4 SV=1
          Length = 253

 Score = 34.3 bits (77), Expect = 3.7
 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 7/58 (12%)
 Frame = +2

Query: 104 SILQPYLSQLSLYFSKGLKYGI-------NRHLQVILGNSCNAKYGNYCRGMIFWHRK 256
           SIL  Y+ ++S+Y  K +   I       NR+  + + NS   KYG Y +G I +  K
Sbjct: 165 SILMKYIDKISMYVGKDIDISIVENQFMKNRNTFMNIENSIKDKYGKYIKGKIHFSNK 222


>tr|B8F1X5|B8F1X5_BORGA CobQ/CobB/MinD/ParA nucleotide binding
           domain protein OS=Borrelia garinii PBr GN=BGAPBR_Aa0005
           PE=4 SV=1
          Length = 253

 Score = 34.3 bits (77), Expect = 3.7
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 7/58 (12%)
 Frame = +2

Query: 104 SILQPYLSQLSLYFSKGLKYGI-------NRHLQVILGNSCNAKYGNYCRGMIFWHRK 256
           SIL  Y+ ++S+Y  K +   I       NR+    + NS   KYG Y +G + ++ K
Sbjct: 165 SILMKYIEKVSMYLDKDIDISIIENQFMKNRNTFKSIENSIKDKYGKYIKGKVHFYNK 222


>tr|B8DXF9|B8DXF9_BORAF PF-32 protein OS=Borrelia afzelii ACA-1
           GN=BafACA1_AA30 PE=4 SV=1
          Length = 253

 Score = 34.3 bits (77), Expect = 3.7
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 7/58 (12%)
 Frame = +2

Query: 104 SILQPYLSQLSLYFSKGLKYGI-------NRHLQVILGNSCNAKYGNYCRGMIFWHRK 256
           SIL  Y+ ++S+Y  K +   I       NR+    + NS   KYG Y +G + ++ K
Sbjct: 165 SILMKYIEKVSMYLDKDIDISIIENQFMKNRNTFKSIENSIKDKYGKYIKGKVHFYNK 222


>tr|A3VSZ1|A3VSZ1_9PROT Methionyl-tRNA synthetase OS=Parvularcula
           bermudensis HTCC2503 GN=PB2503_09294 PE=4 SV=1
          Length = 575

 Score = 33.9 bits (76), Expect = 4.9
 Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
 Frame = +2

Query: 263 GKLFGSWLPHC*FYLYMEFYCCLHSWAREG-DHWWRVGTGADR-EYIGGMNKDNL 421
           GK+F  W     F   +E+      W  EG + WWR   GAD   Y+  M KDN+
Sbjct: 248 GKVFYVW-----FDAPIEYIAATKEWDPEGWESWWRTDQGADEVTYVQFMGKDNV 297


>tr|Q643C9|Q643C9_STRHY Polyprenyl phospho-mannosyltransferase MppI
           OS=Streptomyces hygroscopicus GN=mppI PE=4 SV=1
          Length = 509

 Score = 33.5 bits (75), Expect = 6.4
 Identities = 21/61 (34%), Positives = 28/61 (45%)
 Frame = +3

Query: 306 SIWSSTVVFILGQEKATIGGASVQARTGSTLEA*TKTTFGALTSLVLQL*KHLILSFSMW 485
           S+W+  V  +L     T  GA + A  G +  A T T FG  TS        ++LSF  W
Sbjct: 89  SMWAIRVPAVLCAAAVTALGAMIAAELGGSRRAQTLTAFGVATST-------MVLSFGHW 141

Query: 486 I 488
           I
Sbjct: 142 I 142


>tr|Q3S3F5|Q3S3F5_BORHE BBR33-like protein OS=Borrelia hermsii PE=4
           SV=1
          Length = 246

 Score = 33.5 bits (75), Expect = 6.4
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 7/58 (12%)
 Frame = +2

Query: 104 SILQPYLSQLSLYFSKGLKYGI-------NRHLQVILGNSCNAKYGNYCRGMIFWHRK 256
           SIL  Y+S++S+Y  K +   I       NR+    +  S   KYGN+ +G + +  K
Sbjct: 165 SILMKYISKISIYIDKDIDISIVENQFMRNRNTFKDIEKSIQEKYGNFIKGKVHFSNK 222


>tr|B7G5J2|B7G5J2_PHATR Predicted protein OS=Phaeodactylum tricornutum
            CCAP 1055/1 GN=PHATRDRAFT_47968 PE=4 SV=1
          Length = 4524

 Score = 33.5 bits (75), Expect = 6.4
 Identities = 17/47 (36%), Positives = 27/47 (57%)
 Frame = -2

Query: 307  EVKSAVRKPRTKQLPCSLSMPENHSSAVISIFCVATVSQNNLKVTID 167
            E KS++ KP+T  L   LS    H S +I +  V T++ +N+ V +D
Sbjct: 3966 EAKSSITKPKTPLLVIGLSFAPRHKSEIICLKSV-TIAPHNIAVQVD 4011