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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP911523
Clone id YMU001_000005_H11
Library
Length 268
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000005_H11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CACCTTTGCCAGGTGAGTTGCCTGTGGATGATGATGCAGAGGTTGATGATTGGCTCCAAA
GGTTTCTTGTTTTGGGAGGGTCAACACTGTTCTTTTATCCTCAGGCAGCAGATTTCAGGC
CACAAGGAGCAATCATCATGAGGGAGGTAGTGGATATGGGTTACATATCAGGTCAATTTC
TACATGAACAGGAGAACGTGAAGTGGTTTGGTTTTCAGGTCACAACATCTCAGGGCCTTC
GTCTGGAATGTGCAACCCCTCTAAAGCA
■■Homology search results ■■ -
sp_hit_id P42331
Definition sp|P42331|RHG25_HUMAN Rho GTPase-activating protein 25 OS=Homo sapiens
Align length 60
Score (bit) 34.3
E-value 0.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911523|Adiantum capillus-veneris mRNA, clone:
YMU001_000005_H11.
         (268 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P42331|RHG25_HUMAN Rho GTPase-activating protein 25 OS=Homo s...    34   0.20 
sp|Q8BYW1|RHG25_MOUSE Rho GTPase-activating protein 25 OS=Mus mu...    33   0.45 
sp|Q7Z5H3|RHG22_HUMAN Rho GTPase-activating protein 22 OS=Homo s...    33   0.59 
sp|Q8BL80|RHG22_MOUSE Rho GTPase-activating protein 22 OS=Mus mu...    32   1.00 
sp|Q2RN70|SYL_RHORT Leucyl-tRNA synthetase OS=Rhodospirillum rub...    31   2.2  
sp|Q68WV8|SYL_RICTY Leucyl-tRNA synthetase OS=Rickettsia typhi G...    30   4.9  
sp|Q31IY9|RPOB_THICR DNA-directed RNA polymerase subunit beta OS...    29   6.5  

>sp|P42331|RHG25_HUMAN Rho GTPase-activating protein 25 OS=Homo
           sapiens GN=ARHGAP25 PE=1 SV=1
          Length = 638

 Score = 34.3 bits (77), Expect = 0.20
 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
 Frame = +3

Query: 42  VDDWLQRFLVLGGSTLFFYPQAADFRPQGAIIM-----REVVDMGYISGQFLHEQENVKW 206
           V +W QR+ VL    L++Y    D +PQG + +     +E+      +G+F+ E     W
Sbjct: 53  VKNWQQRYFVLRAQQLYYYKDEEDTKPQGCMYLPGCTIKEIATNPEEAGKFVFEIIPASW 112


>sp|Q8BYW1|RHG25_MOUSE Rho GTPase-activating protein 25 OS=Mus
           musculus GN=Arhgap25 PE=1 SV=2
          Length = 648

 Score = 33.1 bits (74), Expect = 0.45
 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 5/54 (9%)
 Frame = +3

Query: 42  VDDWLQRFLVLGGSTLFFYPQAADFRPQGAIIM-----REVVDMGYISGQFLHE 188
           V +W QR+ VL    L++Y    D +PQG + +     +E+      +G+F+ E
Sbjct: 60  VKNWQQRYFVLRAQQLYYYKDEEDSKPQGCMYLPGSTVKEIATNPEEAGKFVFE 113


>sp|Q7Z5H3|RHG22_HUMAN Rho GTPase-activating protein 22 OS=Homo
           sapiens GN=ARHGAP22 PE=2 SV=1
          Length = 698

 Score = 32.7 bits (73), Expect = 0.59
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +3

Query: 48  DWLQRFLVLGGSTLFFYPQAADFRPQGAIIMR 143
           +W QR+ VL G  LF+Y    + +PQG I ++
Sbjct: 53  NWQQRWFVLRGDQLFYYKDKDEIKPQGFISLQ 84


>sp|Q8BL80|RHG22_MOUSE Rho GTPase-activating protein 22 OS=Mus
           musculus GN=Arhgap22 PE=1 SV=2
          Length = 702

 Score = 32.0 bits (71), Expect = 1.00
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +3

Query: 48  DWLQRFLVLGGSTLFFYPQAADFRPQGAIIMR 143
           +W QR+ VL G  LF+Y    + +PQG I ++
Sbjct: 59  NWQQRWFVLRGDQLFYYKDKDESKPQGFISLQ 90


>sp|Q2RN70|SYL_RHORT Leucyl-tRNA synthetase OS=Rhodospirillum rubrum
           (strain ATCC 11170 / NCIB 8255) GN=leuS PE=3 SV=1
          Length = 862

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 16/33 (48%), Positives = 19/33 (57%)
 Frame = -2

Query: 105 PEDKRTVLTLPKQETFGANHQPLHHHPQATHLA 7
           PED+  VL LP+  TF     PL HHP   H+A
Sbjct: 455 PEDQLPVL-LPEDVTFDKPGNPLDHHPTWKHVA 486


>sp|Q68WV8|SYL_RICTY Leucyl-tRNA synthetase OS=Rickettsia typhi
           GN=leuS PE=3 SV=1
          Length = 828

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 84  LTLPKQETFGANHQPLHHHPQATHL 10
           +TLP   +F  N+ PL HHP   H+
Sbjct: 436 VTLPDDVSFDNNYNPLEHHPSWKHV 460


>sp|Q31IY9|RPOB_THICR DNA-directed RNA polymerase subunit beta
            OS=Thiomicrospira crunogena (strain XCL-2) GN=rpoB PE=3
            SV=1
          Length = 1352

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +3

Query: 117  RPQGAIIMREVVDMGYISGQFLHEQENVKWFGFQV 221
            R Q  +I +++VD   I+  FL  Q++ KWFG  V
Sbjct: 980  RIQPMLIGQKLVDGTEITADFLASQDSSKWFGLNV 1014
tr_hit_id A9RMZ4
Definition tr|A9RMZ4|A9RMZ4_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens
Align length 87
Score (bit) 88.6
E-value 1.0e-16
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911523|Adiantum capillus-veneris mRNA, clone:
YMU001_000005_H11.
         (268 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9RMZ4|A9RMZ4_PHYPA Predicted protein (Fragment) OS=Physcomit...    89   1e-16
tr|A9RGQ1|A9RGQ1_PHYPA Predicted protein OS=Physcomitrella paten...    87   4e-16
tr|Q5KQH1|Q5KQH1_ORYSJ Os05g0595500 protein OS=Oryza sativa subs...    77   4e-13
tr|A2Y866|A2Y866_ORYSI Putative uncharacterized protein OS=Oryza...    77   4e-13
tr|A7QU98|A7QU98_VITVI Chromosome chr2 scaffold_176, whole genom...    74   4e-12
tr|Q84TK3|Q84TK3_ARATH Putative uncharacterized protein At4g2389...    73   8e-12
tr|B6T8I2|B6T8I2_MAIZE Putative uncharacterized protein OS=Zea m...    50   7e-05
tr|A0EDM8|A0EDM8_PARTE Chromosome undetermined scaffold_90, whol...    37   0.64 
tr|A0CJ41|A0CJ41_PARTE Chromosome undetermined scaffold_191, who...    37   0.64 
tr|Q5ZJ53|Q5ZJ53_CHICK Putative uncharacterized protein OS=Gallu...    35   2.4  
tr|B0ERK6|B0ERK6_ENTDI Putative uncharacterized protein OS=Entam...    34   3.2  
tr|B7Z8K7|B7Z8K7_HUMAN cDNA FLJ59112, highly similar to Rho-GTPa...    34   3.2  
tr|B7Z5A5|B7Z5A5_HUMAN cDNA FLJ61332, highly similar to Rho-GTPa...    34   3.2  
tr|A8K2Y1|A8K2Y1_HUMAN cDNA FLJ78435, highly similar to Homo sap...    34   3.2  
tr|A6SIC2|A6SIC2_BOTFB Putative uncharacterized protein OS=Botry...    33   7.0  
tr|B2RS69|B2RS69_MOUSE Rho GTPase activating protein 25 OS=Mus m...    33   7.1  
tr|Q2KJ55|Q2KJ55_BOVIN Rho GTPase activating protein 25 OS=Bos t...    33   7.1  
tr|B7Z498|B7Z498_HUMAN cDNA FLJ51694, highly similar to Rho-GTPa...    33   7.1  
tr|B4DED8|B4DED8_HUMAN cDNA FLJ56006, highly similar to Homo sap...    33   9.2  
tr|A6NDI7|A6NDI7_HUMAN Putative uncharacterized protein ARHGAP22...    33   9.2  
tr|A5YM75|A5YM75_HUMAN ARHGAP22 protein OS=Homo sapiens GN=ARHGA...    33   9.2  

>tr|A9RMZ4|A9RMZ4_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_47272 PE=4 SV=1
          Length = 135

 Score = 88.6 bits (218), Expect = 1e-16
 Identities = 43/87 (49%), Positives = 60/87 (68%)
 Frame = +3

Query: 6   LPGELPVDDDAEVDDWLQRFLVLGGSTLFFYPQAADFRPQGAIIMREVVDMGYISGQFLH 185
           L GE PVDD  +VDDWL RF+V+ GS++ F+ +A D RPQG I+  E+V++G I    LH
Sbjct: 48  LSGEPPVDD-TDVDDWLLRFVVIRGSSICFFLRATDLRPQGTIMRSEIVEVGIIPNH-LH 105

Query: 186 EQENVKWFGFQVTTSQGLRLECATPLK 266
            Q + +W  F +TT  GLRLEC++ +K
Sbjct: 106 HQGDTRWSAFHITTCHGLRLECSSLIK 132


>tr|A9RGQ1|A9RGQ1_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_158980 PE=4 SV=1
          Length = 297

 Score = 87.0 bits (214), Expect = 4e-16
 Identities = 40/79 (50%), Positives = 55/79 (69%)
 Frame = +3

Query: 30  DDAEVDDWLQRFLVLGGSTLFFYPQAADFRPQGAIIMREVVDMGYISGQFLHEQENVKWF 209
           DD +VDDWL RF+V+ GS++ F+ +A D RPQG I+  E+VD+G I    LH Q + +W 
Sbjct: 128 DDTDVDDWLLRFVVIRGSSICFFLRATDLRPQGTIMRSEIVDIGIIPNH-LHHQGDTRWS 186

Query: 210 GFQVTTSQGLRLECATPLK 266
            F +TT  GLRLEC++ LK
Sbjct: 187 AFHITTCHGLRLECSSLLK 205


>tr|Q5KQH1|Q5KQH1_ORYSJ Os05g0595500 protein OS=Oryza sativa subsp.
           japonica GN=OSJNBb0086G17.4 PE=4 SV=1
          Length = 250

 Score = 77.0 bits (188), Expect = 4e-13
 Identities = 35/84 (41%), Positives = 58/84 (69%)
 Frame = +3

Query: 6   LPGELPVDDDAEVDDWLQRFLVLGGSTLFFYPQAADFRPQGAIIMREVVDMGYISGQFLH 185
           LPGE P+ DDA+VDDWL RF+VL G  +++Y ++ D  PQ + ++ ++V++G +   F+ 
Sbjct: 132 LPGEPPILDDADVDDWLPRFVVLQGQCVYYYLKSTDLSPQESTLLCDIVEVGQLP-NFVP 190

Query: 186 EQENVKWFGFQVTTSQGLRLECAT 257
           E E  + + F + TSQGL+ EC++
Sbjct: 191 EDEKTR-YAFYIMTSQGLKFECSS 213


>tr|A2Y866|A2Y866_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_21240 PE=4 SV=1
          Length = 250

 Score = 77.0 bits (188), Expect = 4e-13
 Identities = 35/84 (41%), Positives = 58/84 (69%)
 Frame = +3

Query: 6   LPGELPVDDDAEVDDWLQRFLVLGGSTLFFYPQAADFRPQGAIIMREVVDMGYISGQFLH 185
           LPGE P+ DDA+VDDWL RF+VL G  +++Y ++ D  PQ + ++ ++V++G +   F+ 
Sbjct: 132 LPGEPPILDDADVDDWLPRFVVLQGQCVYYYLKSTDLSPQESTLLCDIVEVGQLP-NFVP 190

Query: 186 EQENVKWFGFQVTTSQGLRLECAT 257
           E E  + + F + TSQGL+ EC++
Sbjct: 191 EDEKTR-YAFYIMTSQGLKFECSS 213


>tr|A7QU98|A7QU98_VITVI Chromosome chr2 scaffold_176, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00006750001
           PE=4 SV=1
          Length = 247

 Score = 73.9 bits (180), Expect = 4e-12
 Identities = 38/87 (43%), Positives = 54/87 (62%)
 Frame = +3

Query: 6   LPGELPVDDDAEVDDWLQRFLVLGGSTLFFYPQAADFRPQGAIIMREVVDMGYISGQFLH 185
           LPGE P  DD EVDDWL RF+VL GS LFFY  + D  PQ + ++ +V ++G +      
Sbjct: 133 LPGEPPPIDDTEVDDWLPRFVVLHGSCLFFYMLSTDLSPQDSTLLSDVTEVGPLP-NLTR 191

Query: 186 EQENVKWFGFQVTTSQGLRLECATPLK 266
           E + ++ + F + TS GLR EC++  K
Sbjct: 192 EDKEIR-YCFYILTSHGLRYECSSVSK 217


>tr|Q84TK3|Q84TK3_ARATH Putative uncharacterized protein At4g23895
           OS=Arabidopsis thaliana GN=At4g23895 PE=2 SV=1
          Length = 152

 Score = 72.8 bits (177), Expect = 8e-12
 Identities = 37/87 (42%), Positives = 51/87 (58%)
 Frame = +3

Query: 6   LPGELPVDDDAEVDDWLQRFLVLGGSTLFFYPQAADFRPQGAIIMREVVDMGYISGQFLH 185
           LPGE P  DD EVDDWL RF+VL G  LFFY  + D  PQ + ++ ++V++G +      
Sbjct: 37  LPGEPPPIDDTEVDDWLPRFVVLQGPCLFFYLLSTDLSPQDSTLLADIVEIGSVPSYTRE 96

Query: 186 EQENVKWFGFQVTTSQGLRLECATPLK 266
             E    + F + T QGLR EC++  K
Sbjct: 97  FDET--HYCFYILTRQGLRFECSSTSK 121


>tr|B6T8I2|B6T8I2_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 180

 Score = 49.7 bits (117), Expect = 7e-05
 Identities = 21/36 (58%), Positives = 27/36 (75%)
 Frame = +3

Query: 6   LPGELPVDDDAEVDDWLQRFLVLGGSTLFFYPQAAD 113
           LPGE P+ DDA+VDDWL RF+VL G  L++Y +  D
Sbjct: 131 LPGEPPILDDADVDDWLPRFVVLQGQCLYYYLKCTD 166


>tr|A0EDM8|A0EDM8_PARTE Chromosome undetermined scaffold_90, whole
           genome shotgun sequence OS=Paramecium tetraurelia
           GN=GSPATT00025739001 PE=4 SV=1
          Length = 1032

 Score = 36.6 bits (83), Expect = 0.64
 Identities = 18/39 (46%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
 Frame = +3

Query: 33  DAEVD-DWLQRFLVLGGSTLFFYPQAADFRPQGAIIMRE 146
           D  +D +W QR+LVL G TL ++    D  P+GAI +RE
Sbjct: 297 DGPIDYNWNQRYLVLDGQTLIYFKDRNDKVPRGAINLRE 335


>tr|A0CJ41|A0CJ41_PARTE Chromosome undetermined scaffold_191, whole
           genome shotgun sequence OS=Paramecium tetraurelia
           GN=GSPATT00038590001 PE=4 SV=1
          Length = 1039

 Score = 36.6 bits (83), Expect = 0.64
 Identities = 18/39 (46%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
 Frame = +3

Query: 33  DAEVD-DWLQRFLVLGGSTLFFYPQAADFRPQGAIIMRE 146
           D  +D +W QR+LVL G TL ++    D  P+GAI +RE
Sbjct: 294 DGPIDYNWNQRYLVLDGQTLIYFKDRNDKVPRGAINLRE 332


>tr|Q5ZJ53|Q5ZJ53_CHICK Putative uncharacterized protein OS=Gallus
           gallus GN=RCJMB04_20k8 PE=2 SV=1
          Length = 650

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 5/54 (9%)
 Frame = +3

Query: 42  VDDWLQRFLVLGGSTLFFYPQAADFRPQGAI-----IMREVVDMGYISGQFLHE 188
           V +W QR+ VL G  L++Y    D +PQG +      ++EV       G+F+ E
Sbjct: 44  VKNWQQRYFVLRGQQLYYYKDEDDTKPQGCLSLQGSTIKEVSGNPEEGGKFIFE 97