NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP911527
Clone id YMU001_000006_A04
Library
Length 379
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000006_A04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GATCATCAAGTTGGCGCAGTTGCCTCTGTCGAATGCATCTGCAACCACGTTCCTATCGAG
ACCGCCCACTTCTGACGTACATAACTCATGTACAAGTCCGATTCACAAGCTATAAAGCAC
GACTGAAATACTCATTGAAAACCATATTTTGGAGACTCGAACAACCCAAAACACTAGTAC
ACAAGCCCGGCAAAACCAAACCTTTGTACATGACTTTTTACATGGTCACTCCCAAAACTC
GAAGCACTATGTACACATATACATGAGGCTAGTTAGCAAGCTTTTTGGCATGATCTACTG
GCTTCATGCTCATCCAAAAAATGCCTGACAACGTAGAACCCTATAGCTTGTCAAGTACAT
CATCGATTCTCGGTATAAA
■■Homology search results ■■ -
sp_hit_id Q6H8R9
Definition sp|Q6H8R9|PACC_USTMA pH-response transcription factor pacC/RIM101 OS=Ustilago maydis
Align length 79
Score (bit) 31.2
E-value 1.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911527|Adiantum capillus-veneris mRNA, clone:
YMU001_000006_A04.
         (366 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6H8R9|PACC_USTMA pH-response transcription factor pacC/RIM10...    31   1.7  
sp|Q5RAK8|CLOCK_PONAB Circadian locomoter output cycles protein ...    30   2.9  
sp|O15516|CLOCK_HUMAN Circadian locomoter output cycles protein ...    30   2.9  
sp|Q60528|MUC1_MESAU Mucin-1 OS=Mesocricetus auratus GN=MUC1 PE=...    30   4.9  
sp|Q8ZQR2|HUTI_SALTY Imidazolonepropionase OS=Salmonella typhimu...    30   4.9  
sp|Q8Z8A0|HUTI_SALTI Imidazolonepropionase OS=Salmonella typhi G...    30   4.9  
sp|A9MTJ5|HUTI_SALPB Imidazolonepropionase OS=Salmonella paratyp...    29   6.4  
sp|Q5PG58|HUTI_SALPA Imidazolonepropionase OS=Salmonella paratyp...    29   6.4  
sp|Q57RH0|HUTI_SALCH Imidazolonepropionase OS=Salmonella cholera...    29   6.4  
sp|Q923T7|TRIM7_MOUSE Tripartite motif-containing protein 7 OS=M...    29   8.3  
sp|Q01609|Y2218_PSEAE Uncharacterized protein PA2218 OS=Pseudomo...    29   8.4  

>sp|Q6H8R9|PACC_USTMA pH-response transcription factor pacC/RIM101
           OS=Ustilago maydis GN=PACC PE=3 SV=2
          Length = 791

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 22/79 (27%), Positives = 37/79 (46%)
 Frame = +2

Query: 23  PLSNASATTFLSRPPTSDVHNSCTSPIHKL*STTEILIENHILETRTTQNTSTQARQNQT 202
           P ++   + + S PPTSD H + ++P   L S     I+       T Q +S     +Q 
Sbjct: 214 PSASTYPSAYPSLPPTSDYHYAHSTPSASL-SPMSSRID-------TPQGSSPAPNHHQ- 264

Query: 203 FVHDFLHGHSQNSKHYVHI 259
             H   H H+Q++  Y+H+
Sbjct: 265 --HQHPHHHAQDAASYIHL 281


>sp|Q5RAK8|CLOCK_PONAB Circadian locomoter output cycles protein
           kaput OS=Pongo abelii GN=CLOCK PE=2 SV=1
          Length = 846

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 18/50 (36%), Positives = 28/50 (56%)
 Frame = +2

Query: 92  TSPIHKL*STTEILIENHILETRTTQNTSTQARQNQTFVHDFLHGHSQNS 241
           T+ I    +T  I    H+++ +T Q+TSTQ++QN       L GHSQ +
Sbjct: 604 TNQIQSGMNTGHIGTTQHMIQQQTLQSTSTQSQQN------VLSGHSQQT 647


>sp|O15516|CLOCK_HUMAN Circadian locomoter output cycles protein
           kaput OS=Homo sapiens GN=CLOCK PE=1 SV=1
          Length = 846

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 18/50 (36%), Positives = 28/50 (56%)
 Frame = +2

Query: 92  TSPIHKL*STTEILIENHILETRTTQNTSTQARQNQTFVHDFLHGHSQNS 241
           T+ I    +T  I    H+++ +T Q+TSTQ++QN       L GHSQ +
Sbjct: 604 TNQIQSGMNTGHIGTTQHMIQQQTLQSTSTQSQQN------VLSGHSQQT 647


>sp|Q60528|MUC1_MESAU Mucin-1 OS=Mesocricetus auratus GN=MUC1 PE=2
           SV=1
          Length = 676

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 17/49 (34%), Positives = 23/49 (46%)
 Frame = +2

Query: 56  SRPPTSDVHNSCTSPIHKL*STTEILIENHILETRTTQNTSTQARQNQT 202
           S PPTS V NS T+P+H   S        ++  T     +ST A  + T
Sbjct: 246 SAPPTSSVVNSATTPVHSGSSAPPTSSAVNLATTPVHSGSSTPATNSTT 294


>sp|Q8ZQR2|HUTI_SALTY Imidazolonepropionase OS=Salmonella
           typhimurium GN=hutI PE=3 SV=1
          Length = 407

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 19/53 (35%), Positives = 26/53 (49%)
 Frame = +3

Query: 63  RPLLTYITHVQVRFTSYKARLKYSLKTIFWRLEQPKTLVHKPGKTKPLYMTFY 221
           R L    TH Q+R   Y+A        + W  EQP  +V++PG+  PLY   Y
Sbjct: 358 RALGRQATHGQIR-AGYRADF------VVWDAEQPVEIVYEPGR-NPLYQRVY 402


>sp|Q8Z8A0|HUTI_SALTI Imidazolonepropionase OS=Salmonella typhi
           GN=hutI PE=3 SV=1
          Length = 407

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 19/53 (35%), Positives = 26/53 (49%)
 Frame = +3

Query: 63  RPLLTYITHVQVRFTSYKARLKYSLKTIFWRLEQPKTLVHKPGKTKPLYMTFY 221
           R L    TH Q+R   Y+A        + W  EQP  +V++PG+  PLY   Y
Sbjct: 358 RALGRQATHGQIR-AGYRADF------VVWDAEQPVEIVYEPGR-NPLYQRVY 402


>sp|A9MTJ5|HUTI_SALPB Imidazolonepropionase OS=Salmonella paratyphi
           B (strain ATCC BAA-1250 / SPB7) GN=hutI PE=3 SV=1
          Length = 407

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +3

Query: 105 TSYKARLKYSLKTIFWRLEQPKTLVHKPGKTKPLYMTFY 221
           T  + R  Y    + W  EQP  +V++PG+  PLY   Y
Sbjct: 365 THGQLRAGYRADFVVWDAEQPVEIVYEPGR-NPLYQRVY 402


>sp|Q5PG58|HUTI_SALPA Imidazolonepropionase OS=Salmonella paratyphi
           A GN=hutI PE=3 SV=1
          Length = 407

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +3

Query: 105 TSYKARLKYSLKTIFWRLEQPKTLVHKPGKTKPLYMTFY 221
           T  + R  Y    + W  EQP  +V++PG+  PLY   Y
Sbjct: 365 THGQLRAGYRADFVVWDAEQPVEIVYEPGR-NPLYQRVY 402


>sp|Q57RH0|HUTI_SALCH Imidazolonepropionase OS=Salmonella
           choleraesuis GN=hutI PE=3 SV=2
          Length = 407

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +3

Query: 105 TSYKARLKYSLKTIFWRLEQPKTLVHKPGKTKPLYMTFY 221
           T  + R  Y    + W  EQP  +V++PG+  PLY   Y
Sbjct: 365 THGQLRAGYRADFVVWDAEQPVEIVYEPGR-NPLYQRVY 402


>sp|Q923T7|TRIM7_MOUSE Tripartite motif-containing protein 7 OS=Mus
           musculus GN=Trim7 PE=2 SV=2
          Length = 510

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -1

Query: 255 CT*CFEFWE*PCKKSCTKVWFCRACVLVFW 166
           C+ C EF+  P    C    FCRAC++  W
Sbjct: 29  CSICLEFFREPVSVECGHS-FCRACIMRCW 57
tr_hit_id Q480U4
Definition tr|Q480U4|Q480U4_COLP3 Sensor protein OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681)
Align length 87
Score (bit) 36.2
E-value 0.84
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911527|Adiantum capillus-veneris mRNA, clone:
YMU001_000006_A04.
         (366 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q480U4|Q480U4_COLP3 Sensor protein OS=Colwellia psychrerythra...    36   0.84 
tr|A1D4Z1|A1D4Z1_NEOFI ARP2/3 complex 34 kDa subunit , putative ...    35   1.9  
tr|Q4WKF3|Q4WKF3_ASPFU ARP2/3 complex 34 kDa subunit , putative ...    35   2.4  
tr|B0XMK5|B0XMK5_ASPFC ARP2/3 complex 34 kDa subunit , putative ...    35   2.4  
tr|B6H6M5|B6H6M5_PENCH Pc15g00800 protein OS=Penicillium chrysog...    34   4.2  
tr|B3NWN4|B3NWN4_DROER GG19504 OS=Drosophila erecta GN=GG19504 P...    33   5.5  
tr|Q6I7E2|Q6I7E2_STAAU Putative uncharacterized protein OS=Staph...    33   9.3  

>tr|Q480U4|Q480U4_COLP3 Sensor protein OS=Colwellia psychrerythraea
           (strain 34H / ATCC BAA-681) GN=CPS_2713 PE=4 SV=1
          Length = 479

 Score = 36.2 bits (82), Expect = 0.84
 Identities = 30/87 (34%), Positives = 42/87 (48%), Gaps = 6/87 (6%)
 Frame = +2

Query: 68  TSDVHNSCTSPIHKL*STTEILIE----NHILETRTTQNTSTQARQNQTFVHDFLHGHSQ 235
           TSD+ +   +PI +L S TEI I+      +L T      S   R N   V   L  +  
Sbjct: 250 TSDIAHELKTPISELMSVTEIAIKYPQNKEVLATFKDDVISISMRMN-NIVKSLLMFNKT 308

Query: 236 NSKHYV--HIYMRLVSKLFGMIYWLHA 310
           NSKH+V     + LVS+L G+I   H+
Sbjct: 309 NSKHFVLSTTEIDLVSELHGLIERFHS 335


>tr|A1D4Z1|A1D4Z1_NEOFI ARP2/3 complex 34 kDa subunit , putative
           OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 /
           NRRL 181) GN=NFIA_021930 PE=4 SV=1
          Length = 320

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 28/83 (33%), Positives = 36/83 (43%), Gaps = 2/83 (2%)
 Frame = +2

Query: 26  LSNASATTFLSRPPTS--DVHNSCTSPIHKL*STTEILIENHILETRTTQNTSTQARQNQ 199
           L NA    F S PP     V    T+   K+   T +L   H+   R  +N S      Q
Sbjct: 209 LQNAPQVLFRSDPPLELQGVPGLQTAGDGKMSYVTFVLFPRHLTSQRRYENIS----HIQ 264

Query: 200 TFVHDFLHGHSQNSKHYVHIYMR 268
           TF  D+ H H + SK Y+H  MR
Sbjct: 265 TF-RDYFHYHIKASKAYIHTRMR 286


>tr|Q4WKF3|Q4WKF3_ASPFU ARP2/3 complex 34 kDa subunit , putative
           OS=Aspergillus fumigatus GN=AFUA_1G02670 PE=4 SV=1
          Length = 320

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 28/83 (33%), Positives = 36/83 (43%), Gaps = 2/83 (2%)
 Frame = +2

Query: 26  LSNASATTFLSRPPTS--DVHNSCTSPIHKL*STTEILIENHILETRTTQNTSTQARQNQ 199
           L NA    F S PP     V    T+   K+   T +L   H+   R  +N S      Q
Sbjct: 209 LQNAPQVLFRSDPPLELQGVPGLQTAGDGKMSYVTFVLFPRHLTPQRRYENIS----HIQ 264

Query: 200 TFVHDFLHGHSQNSKHYVHIYMR 268
           TF  D+ H H + SK Y+H  MR
Sbjct: 265 TF-RDYFHYHIKASKAYIHTRMR 286


>tr|B0XMK5|B0XMK5_ASPFC ARP2/3 complex 34 kDa subunit , putative
           OS=Aspergillus fumigatus (strain CEA10 / CBS 144.89 /
           FGSC A1163) GN=AFUB_003070 PE=4 SV=1
          Length = 320

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 28/83 (33%), Positives = 36/83 (43%), Gaps = 2/83 (2%)
 Frame = +2

Query: 26  LSNASATTFLSRPPTS--DVHNSCTSPIHKL*STTEILIENHILETRTTQNTSTQARQNQ 199
           L NA    F S PP     V    T+   K+   T +L   H+   R  +N S      Q
Sbjct: 209 LQNAPQVLFRSDPPLELQGVPGLQTAGDGKMSYVTFVLFPRHLTPQRRYENIS----HIQ 264

Query: 200 TFVHDFLHGHSQNSKHYVHIYMR 268
           TF  D+ H H + SK Y+H  MR
Sbjct: 265 TF-RDYFHYHIKASKAYIHTRMR 286


>tr|B6H6M5|B6H6M5_PENCH Pc15g00800 protein OS=Penicillium
           chrysogenum Wisconsin 54-1255 GN=Pc15g00800 PE=4 SV=1
          Length = 321

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
 Frame = +2

Query: 20  LPLSNASATTFLSRPPTSDVH-NSCTSPIHKL*STTEILIENHILETRTTQNTSTQARQN 196
           L L NA    F + PP    +    ++P  ++   T +L   H+   R  +N S      
Sbjct: 209 LTLQNAPQVLFRNDPPLELANVPGLSAPGGEVSYVTFVLFPRHLTPQRRYENIS----HI 264

Query: 197 QTFVHDFLHGHSQNSKHYVHIYMR 268
           QTF  D+ H H + SK Y+H  MR
Sbjct: 265 QTF-RDYFHYHIKASKAYIHTRMR 287


>tr|B3NWN4|B3NWN4_DROER GG19504 OS=Drosophila erecta GN=GG19504 PE=4
           SV=1
          Length = 287

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
 Frame = +2

Query: 20  LPLSNASATTFLSRPPTSDVHNSCTSP---IHKL*STTEILIENHILETRTTQN--TSTQ 184
           +P ++ S     +  P+S VHN+  SP   +H    +T   ++NH + T T QN   ST 
Sbjct: 74  MPTTSTSTVHNNNMSPSSSVHNNHMSPSSSVHNNHMSTSSPVQNHYMSTTTVQNHYMSTT 133

Query: 185 ARQN 196
             QN
Sbjct: 134 TVQN 137


>tr|Q6I7E2|Q6I7E2_STAAU Putative uncharacterized protein
           OS=Staphylococcus aureus PE=4 SV=1
          Length = 122

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 12/59 (20%)
 Frame = +2

Query: 119 TTEILIENHILETRTTQNTSTQARQNQTFVHDFLHGHSQNS------------KHYVHI 259
           T EI + N I+     +N STQAR NQ  + D+L  HS  S            KH +HI
Sbjct: 44  TYEIEVNNQIVYAN--RNISTQARANQVSIKDWLKRHSNYSVCHKTYEPYIDRKHLIHI 100