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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP911528
Clone id YMU001_000006_A05
Library
Length 445
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000006_A05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GATGAGTGGATGATTAGTGTGAAGGATGTCACCGCAACGGCAGCAACCACTATCTCAAGG
ACAGATTGTGCAGTAGATGGCAATGATGGAGCGGGATTGCTCGAAGCACCACGTGATGAA
GGGGCACTCTTGGATACAGGAGTTCCGGACGTGGATTTGTCTCAGCTGTTCAACTTCGTG
GATGGTGAAGACTTCTGTACAGGAGATAGGAGCCAGCCTGATCCCACCGAACTCTATGGA
GGCCTCTGTGAAAGACAATCTAAGCCATTTGTGTAGGTCACAATCAGGAAGCATGTTGAC
TGAGTGTAATGAGCTCGATATAAAAGTTAGCACCGGGCATTCATGGGGATTGACAACACC
AGAAGATAGGGGCAGCGCTATCCATGATAAATACCCCCCTTTCAATAAGGCGGGGAGAGA
GGAAGCAGGTCTCAAGAGACAGGCA
■■Homology search results ■■ -
sp_hit_id Q09654
Definition sp|Q09654|ARD1_CAEEL Putative GTP-binding protein ard-1 homolog OS=Caenorhabditis elegans
Align length 36
Score (bit) 32.0
E-value 1.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911528|Adiantum capillus-veneris mRNA, clone:
YMU001_000006_A05.
         (445 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q09654|ARD1_CAEEL Putative GTP-binding protein ard-1 homolog ...    32   1.2  
sp|P74856|SSAV_SALTY Secretion system apparatus protein ssaV OS=...    31   2.1  
sp|Q8VIK5|PEAR1_MOUSE Platelet endothelial aggregation receptor ...    31   2.7  
sp|P06281|RENI1_MOUSE Renin-1 OS=Mus musculus GN=Ren1 PE=1 SV=1        30   4.6  
sp|Q5BHE2|ATM_EMENI Serine/threonine-protein kinase tel1 OS=Emer...    30   4.6  
sp|Q8NEZ3|WDR19_HUMAN WD repeat-containing protein 19 OS=Homo sa...    30   6.0  
sp|Q709C8|VP13C_HUMAN Vacuolar protein sorting-associated protei...    30   6.0  
sp|Q9BYW2|SETD2_HUMAN Histone-lysine N-methyltransferase SETD2 O...    30   6.0  
sp|Q5VY43|PEAR1_HUMAN Platelet endothelial aggregation receptor ...    30   6.0  
sp|Q05140|AP180_RAT Clathrin coat assembly protein AP180 OS=Ratt...    29   7.7  
sp|Q61548|AP180_MOUSE Clathrin coat assembly protein AP180 OS=Mu...    29   7.7  
sp|O60641|AP180_HUMAN Clathrin coat assembly protein AP180 OS=Ho...    29   7.7  

>sp|Q09654|ARD1_CAEEL Putative GTP-binding protein ard-1 homolog
           OS=Caenorhabditis elegans GN=arc-1 PE=2 SV=3
          Length = 539

 Score = 32.0 bits (71), Expect = 1.2
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -2

Query: 108 CFEQSRSIIAIYCTICP*DSGCC-RCGDILHTNHPL 4
           C E S  +  IYCT+C  DS  C RC +  H+ + L
Sbjct: 108 CDEDSEHVAVIYCTVC--DSNLCERCSESTHSTNVL 141


>sp|P74856|SSAV_SALTY Secretion system apparatus protein ssaV
           OS=Salmonella typhimurium GN=ssaV PE=3 SV=1
          Length = 681

 Score = 31.2 bits (69), Expect = 2.1
 Identities = 16/56 (28%), Positives = 27/56 (48%)
 Frame = -2

Query: 348 PHECPVLTFISSSLHSVNMLPDCDLHKWLRLSFTEASIEFGGIRLAPISCTEVFTI 181
           P  CP++  +S +LHS +++ D D  +W     T   +    I + P   TE  T+
Sbjct: 348 PGACPLILRLSPTLHSADLIRDIDAMRWFLFEDTGVPLPEVNIEVLP-EPTEKLTV 402


>sp|Q8VIK5|PEAR1_MOUSE Platelet endothelial aggregation receptor 1
           OS=Mus musculus GN=Pear1 PE=1 SV=1
          Length = 1034

 Score = 30.8 bits (68), Expect = 2.7
 Identities = 14/46 (30%), Positives = 19/46 (41%)
 Frame = -2

Query: 147 RNSCIQECPFITWCFEQSRSIIAIYCTICP*DSGCCRCGDILHTNH 10
           R +C   CP  TW F  + S    +  +C   +G C C    H  H
Sbjct: 472 RGNCSVPCPLGTWGFNCNASCQCAHDGVCSPQTGACTCTPGWHGAH 517


>sp|P06281|RENI1_MOUSE Renin-1 OS=Mus musculus GN=Ren1 PE=1 SV=1
          Length = 402

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +1

Query: 1   DEWMISVKDVTATAATTISRTDCAVDGNDGAGLLEAP 111
           D W I++K V+  ++T +    CAV  + G+  + AP
Sbjct: 260 DSWQITMKGVSVGSSTLLCEEGCAVVVDTGSSFISAP 296


>sp|Q5BHE2|ATM_EMENI Serine/threonine-protein kinase tel1
            OS=Emericella nidulans GN=tel1 PE=3 SV=1
          Length = 2793

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +2

Query: 152  WICLSCSTSWMVKTSVQEIGASLIPPNSMEASVK 253
            W  +S  TSW+  T VQE+G  L    ++ +S+K
Sbjct: 1967 WEEISARTSWLKNTDVQEVGEILSSHETLFSSIK 2000


>sp|Q8NEZ3|WDR19_HUMAN WD repeat-containing protein 19 OS=Homo
           sapiens GN=WDR19 PE=2 SV=2
          Length = 1342

 Score = 29.6 bits (65), Expect = 6.0
 Identities = 17/68 (25%), Positives = 32/68 (47%)
 Frame = +2

Query: 125 HSWIQEFRTWICLSCSTSWMVKTSVQEIGASLIPPNSMEASVKDNLSHLCRSQSGSMLTE 304
           ++W  + R  I  SC    ++ T   E+G  +    +     KDNL+ +  SQ+ + +  
Sbjct: 237 YNWYGDGRIMIGFSCGHFVVISTHTGELGQEIFQARNH----KDNLTSIAVSQTLNKVAT 292

Query: 305 CNELDIKV 328
           C +  IK+
Sbjct: 293 CGDNCIKI 300


>sp|Q709C8|VP13C_HUMAN Vacuolar protein sorting-associated protein 13C
            OS=Homo sapiens GN=VPS13C PE=1 SV=1
          Length = 3753

 Score = 29.6 bits (65), Expect = 6.0
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +2

Query: 35   QRQQPLSQGQIVQ*MAMMERDCSKHHVMKGHSWIQ 139
            Q+ +P SQ QI+    ++E+   KH + + H WI+
Sbjct: 3125 QKWKPFSQKQII----LLEQSYQKHQISRDHGWIK 3155


>sp|Q9BYW2|SETD2_HUMAN Histone-lysine N-methyltransferase SETD2
           OS=Homo sapiens GN=SETD2 PE=1 SV=2
          Length = 2564

 Score = 29.6 bits (65), Expect = 6.0
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = +2

Query: 305 CNELDIKVSTGHSWGLTTPEDRGSAIH--DKYPPFNKAG 415
           C EL+ ++   HS+ L TP  +GS +   +K P   KAG
Sbjct: 575 CTELNEEIKQSHSFSLQTPCSKGSELRMINKNPEREKAG 613


>sp|Q5VY43|PEAR1_HUMAN Platelet endothelial aggregation receptor 1
           OS=Homo sapiens GN=PEAR1 PE=1 SV=1
          Length = 1037

 Score = 29.6 bits (65), Expect = 6.0
 Identities = 14/46 (30%), Positives = 19/46 (41%)
 Frame = -2

Query: 147 RNSCIQECPFITWCFEQSRSIIAIYCTICP*DSGCCRCGDILHTNH 10
           R +C   CP  TW F  + S    +  +C   +G C C    H  H
Sbjct: 474 RGNCSVPCPPGTWGFSCNASCQCAHEAVCSPQTGACTCTPGWHGAH 519


>sp|Q05140|AP180_RAT Clathrin coat assembly protein AP180 OS=Rattus
           norvegicus GN=Snap91 PE=1 SV=1
          Length = 915

 Score = 29.3 bits (64), Expect = 7.7
 Identities = 19/55 (34%), Positives = 31/55 (56%)
 Frame = -3

Query: 305 TQSTCFLIVTYTNGLDCLSQRPP*SSVGSGWLLSPVQKSSPSTKLNS*DKSTSGT 141
           TQ+   L+ T    L+ L  + P ++ GSG   SP+ KSSP+T + S + + + T
Sbjct: 268 TQAPSSLMETLEQHLNTLEGKKPGNNEGSG-APSPLSKSSPATTVTSPNSTPAKT 321
tr_hit_id A0C7M9
Definition tr|A0C7M9|A0C7M9_PARTE Chromosome undetermined scaffold_155, whole genome shotgun sequence OS=Paramecium tetraurelia
Align length 65
Score (bit) 36.6
E-value 0.63
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911528|Adiantum capillus-veneris mRNA, clone:
YMU001_000006_A05.
         (445 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A0C7M9|A0C7M9_PARTE Chromosome undetermined scaffold_155, who...    37   0.63 
tr|B3DLI8|B3DLI8_XENTR Snap91 protein OS=Xenopus tropicalis GN=s...    34   4.1  
tr|Q4T641|Q4T641_TETNG Chromosome undetermined SCAF8938, whole g...    33   5.3  
tr|Q47XY2|Q47XY2_COLP3 Protein kinase domain protein OS=Colwelli...    33   5.3  
tr|A0JZ46|A0JZ46_ARTS2 Two component transcriptional regulator, ...    33   5.3  
tr|A8RJ34|A8RJ34_9CLOT Putative uncharacterized protein OS=Clost...    33   7.0  
tr|A7CTR6|A7CTR6_9BACT Autotransporter-associated beta strand re...    33   7.0  
tr|B8LNQ8|B8LNQ8_PICSI Putative uncharacterized protein OS=Picea...    33   7.0  
tr|A9RP45|A9RP45_PHYPA Predicted protein OS=Physcomitrella paten...    33   9.1  

>tr|A0C7M9|A0C7M9_PARTE Chromosome undetermined scaffold_155, whole
           genome shotgun sequence OS=Paramecium tetraurelia
           GN=GSPATT00035926001 PE=4 SV=1
          Length = 356

 Score = 36.6 bits (83), Expect = 0.63
 Identities = 20/65 (30%), Positives = 33/65 (50%)
 Frame = -2

Query: 207 ISCTEVFTIHEVEQLRQIHVRNSCIQECPFITWCFEQSRSIIAIYCTICP*DSGCCRCGD 28
           +SC ++FTI + EQ +   V++ C Q          Q ++I ++YC++       C C D
Sbjct: 84  VSCKKIFTIVDFEQHQTECVKSKC-QNYDVCNEFITQEKNISSLYCSV------ICECTD 136

Query: 27  ILHTN 13
            LH N
Sbjct: 137 QLHNN 141


>tr|B3DLI8|B3DLI8_XENTR Snap91 protein OS=Xenopus tropicalis
           GN=snap91 PE=2 SV=1
          Length = 904

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 23/55 (41%), Positives = 31/55 (56%)
 Frame = -3

Query: 305 TQSTCFLIVTYTNGLDCLSQRPP*SSVGSGWLLSPVQKSSPSTKLNS*DKSTSGT 141
           TQ+   L+ T    L+ L  + P SS GSG   SPV KSSP+T + S + + S T
Sbjct: 268 TQAPSSLLETLEQHLNTLEGKKPGSSEGSG---SPVGKSSPATTVTSPNATPSKT 319


>tr|Q4T641|Q4T641_TETNG Chromosome undetermined SCAF8938, whole
           genome shotgun sequence OS=Tetraodon nigroviridis
           GN=GSTENG00006491001 PE=4 SV=1
          Length = 710

 Score = 33.5 bits (75), Expect = 5.3
 Identities = 28/98 (28%), Positives = 43/98 (43%), Gaps = 2/98 (2%)
 Frame = -2

Query: 303 SVNMLPDCDLHKWLRLSFTEASIEFGGIRLAPISCTEVFTIHEVEQLRQIHVRNSCIQEC 124
           S ++L  C LH  L +  +   +EF G         EV+T H V  L + ++  SC   C
Sbjct: 514 SCHLLKLCKLHPSLVVDQSHELLEFAGATTNVYGNEEVYT-HVVWVLGE-YLSVSCDSRC 571

Query: 123 P--FITWCFEQSRSIIAIYCTICP*DSGCCRCGDILHT 16
               IT CFE   +++    +  P D G C    ++ T
Sbjct: 572 SVSLITSCFESLEAVLFEITSSPPPDGGSCPAPRVITT 609


>tr|Q47XY2|Q47XY2_COLP3 Protein kinase domain protein OS=Colwellia
           psychrerythraea (strain 34H / ATCC BAA-681) GN=CPS_3670
           PE=4 SV=1
          Length = 781

 Score = 33.5 bits (75), Expect = 5.3
 Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
 Frame = +2

Query: 188 KTSVQEIGASLIPPNS-MEASVKDNLSHLCRSQSGSMLTECNELDIKVSTGHSWGLTTPE 364
           KT  +E    L+PPNS +E+ VK  +    R++  S+LT  N+        HS      E
Sbjct: 403 KTPYKETNEFLVPPNSTVESKVKSKI----RAKLKSLLT--NKRVKSPQVKHS-SFLPEE 455

Query: 365 DRGSAIHDKYPPFNK 409
           +  +A H+++PP NK
Sbjct: 456 NTNAASHNQFPPINK 470


>tr|A0JZ46|A0JZ46_ARTS2 Two component transcriptional regulator,
           winged helix family OS=Arthrobacter sp. (strain FB24)
           GN=Arth_2937 PE=4 SV=1
          Length = 255

 Score = 33.5 bits (75), Expect = 5.3
 Identities = 26/82 (31%), Positives = 38/82 (46%), Gaps = 6/82 (7%)
 Frame = +1

Query: 70  AVDGNDGAGLLEAPRDEGALLDTGVPDVD----LSQLFNFVDG-EDFCTGDRSQPDP-TE 231
           A DG +G  L+         LD G+PD+D    L ++  F D      TG   +PD  T 
Sbjct: 34  ASDGREGVELVRHQHANVVTLDVGLPDIDGYEVLRRIRQFSDAYVVMLTGRTEEPDMLTA 93

Query: 232 LYGGLCERQSKPFV*VTIRKHV 297
           L+ G  +  +KPF  + +R  V
Sbjct: 94  LHSGADDYITKPFRPLELRARV 115


>tr|A8RJ34|A8RJ34_9CLOT Putative uncharacterized protein
           OS=Clostridium bolteae ATCC BAA-613 GN=CLOBOL_00871 PE=4
           SV=1
          Length = 230

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 16/38 (42%), Positives = 23/38 (60%)
 Frame = +1

Query: 67  CAVDGNDGAGLLEAPRDEGALLDTGVPDVDLSQLFNFV 180
           CA  G DG  L+E+ + +  LLD G+PD+D  +L   V
Sbjct: 33  CANTGTDGLKLIESLKPDVVLLDLGLPDMDGLELIQEV 70


>tr|A7CTR6|A7CTR6_9BACT Autotransporter-associated beta strand
           repeat protein OS=Opitutaceae bacterium TAV2
           GN=ObacDRAFT_1021 PE=4 SV=1
          Length = 434

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 22/96 (22%), Positives = 41/96 (42%), Gaps = 8/96 (8%)
 Frame = +2

Query: 125 HSWIQEFRTWICLSCSTSWMVKTSVQEIGASLIPPNSMEASVKDNLSHLCRSQSGS---- 292
           H   Q  RTW     +++W    +  +    ++P NS EA + +       + +G+    
Sbjct: 33  HLDAQSTRTWDGGGSTSNWNEAANWSD---DVVPGNSFEAQLGNAAPETITAPNGTAQPR 89

Query: 293 ----MLTECNELDIKVSTGHSWGLTTPEDRGSAIHD 388
               + T  N++ I+++ G +W L TP   G    D
Sbjct: 90  GIRFLDTAANDITIQLAAGSTWRLVTPASGGGVFVD 125


>tr|B8LNQ8|B8LNQ8_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 272

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 20/51 (39%), Positives = 24/51 (47%)
 Frame = -2

Query: 372 PLSSGVVNPHECPVLTFISSSLHSVNMLPDCDLHKWLRLSFTEASIEFGGI 220
           P  S  +NP      TFISS +H VN       HKW RL  + A + F  I
Sbjct: 12  PGLSASINPRSIAQSTFISSQIHPVNP------HKWPRLYSSPARLAFHNI 56


>tr|A9RP45|A9RP45_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_68853 PE=4 SV=1
          Length = 194

 Score = 32.7 bits (73), Expect = 9.1
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -2

Query: 108 CFEQSRSIIAIYCTICP*DSGCCRCGDI 25
           CF++  ++   +C  CP  +GCC+CG I
Sbjct: 61  CFKEDDNLDPHFCEQCPMLTGCCKCGKI 88