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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP911533
Clone id YMU001_000006_A10
Library
Length 303
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000006_A10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GCTTGAGAGTATTACCTGCAGGTACTCCCGCACTGTTGCGGGACAGTTTCATGGAGTGTC
CCATCTATACTATCGCAAGCATAAAAAGTCAAAGGTCCACTGCAACTCTACAACGCGGAC
AATTCATCTTTACGCTCTTGTGTGCTACGTGCTTCCCCCCTCTTTGTCTTGCCCCTCTAT
TGGCCTTGAATCAAACATGCCTTCCCCCTCCTCTACCTCCACCCTCTTTCATATCAGCCC
TAGCCCAACAGCTCATGCACCTAATGTGCCTGTTGTACCTGTTTCCTTCCACTTGATAAC
CTC
■■Homology search results ■■ -
sp_hit_id O43078
Definition sp|O43078|SUR2_SCHPO Protein sur2 OS=Schizosaccharomyces pombe
Align length 45
Score (bit) 33.1
E-value 0.44
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911533|Adiantum capillus-veneris mRNA, clone:
YMU001_000006_A10.
         (289 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O43078|SUR2_SCHPO Protein sur2 OS=Schizosaccharomyces pombe G...    33   0.44 
sp|P11279|LAMP1_HUMAN Lysosome-associated membrane glycoprotein ...    33   0.44 
sp|P15822|ZEP1_HUMAN Zinc finger protein 40 OS=Homo sapiens GN=H...    32   0.97 
sp|P36202|PDLI4_RAT PDZ and LIM domain protein 4 OS=Rattus norve...    32   0.97 
sp|P08519|APOA_HUMAN Apolipoprotein(a) OS=Homo sapiens GN=LPA PE...    31   2.2  
sp|Q7TN99|CPEB3_MOUSE Cytoplasmic polyadenylation element-bindin...    30   2.8  
sp|O13800|RDL1_SCHPO DNA repair protein rdl1 OS=Schizosaccharomy...    30   3.7  
sp|Q23933|DEC1_DROER Defective chorion-1 protein (Fragments) OS=...    30   3.7  
sp|Q54QC0|MYBU_DICDI Myb-like protein U OS=Dictyostelium discoid...    30   4.8  
sp|Q9BUN1|CA056_HUMAN Uncharacterized protein C1orf56 OS=Homo sa...    30   4.8  
sp|O94989|ARHGF_HUMAN Rho guanine nucleotide exchange factor 15 ...    29   6.3  
sp|Q4PBP6|NST1_USTMA Stress response protein NST1 OS=Ustilago ma...    29   8.2  
sp|P26632|EGR1_DANRE Early growth response protein 1 OS=Danio re...    29   8.2  

>sp|O43078|SUR2_SCHPO Protein sur2 OS=Schizosaccharomyces pombe
           GN=sur2 PE=1 SV=1
          Length = 660

 Score = 33.1 bits (74), Expect = 0.44
 Identities = 18/45 (40%), Positives = 25/45 (55%)
 Frame = +2

Query: 152 LPPSLSCPSIGLESNMPSPSSTSTLFHISPSPTAHAPNVPVVPVS 286
           L  S+S PSI + +N  + +ST   FH +P P  H P VP+   S
Sbjct: 239 LSNSVSSPSIQVSNNQNANNSTPLSFH-APIPPLHVPAVPLTSAS 282


>sp|P11279|LAMP1_HUMAN Lysosome-associated membrane glycoprotein 1
           OS=Homo sapiens GN=LAMP1 PE=1 SV=3
          Length = 417

 Score = 33.1 bits (74), Expect = 0.44
 Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
 Frame = +2

Query: 71  YRKHKKSKVHCNSTTRTIHLYALVCYVLPPSLSCPSIGLESNMPSPSSTSTL-FHISPSP 247
           YR    ++VH N+ T T+H   +  Y+   S S      E + PSP++        SPSP
Sbjct: 153 YRCVSGTQVHMNNVTVTLHDATIQAYLSNSSFSRGETRCEQDRPSPTTAPPAPPSPSPSP 212

Query: 248 TAHAPNVPVVPVS 286
              +P+V    VS
Sbjct: 213 VPKSPSVDKYNVS 225


>sp|P15822|ZEP1_HUMAN Zinc finger protein 40 OS=Homo sapiens GN=HIVEP1
            PE=1 SV=2
          Length = 2717

 Score = 32.0 bits (71), Expect = 0.97
 Identities = 16/46 (34%), Positives = 27/46 (58%)
 Frame = +2

Query: 149  VLPPSLSCPSIGLESNMPSPSSTSTLFHISPSPTAHAPNVPVVPVS 286
            V PP L+  ++GL+    +PSS S     SP+P AH P + ++ ++
Sbjct: 2509 VHPPGLALNAVGLQVLTANPSSQS-----SPAPQAHIPGLQILNIA 2549


>sp|P36202|PDLI4_RAT PDZ and LIM domain protein 4 OS=Rattus
           norvegicus GN=Pdlim4 PE=2 SV=2
          Length = 330

 Score = 32.0 bits (71), Expect = 0.97
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = +2

Query: 146 YVLPPSLSCPSIGLESNMPSPSSTSTLFHISPSPTAHAPNV 268
           Y  PP L  P  G  + +  PS  S L H+SP P+A  P +
Sbjct: 136 YGQPPRLPVPHNGSSNEVTLPSQMSAL-HVSPPPSADTPRI 175


>sp|P08519|APOA_HUMAN Apolipoprotein(a) OS=Homo sapiens GN=LPA PE=1
            SV=1
          Length = 4548

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 21/89 (23%), Positives = 37/89 (41%)
 Frame = +2

Query: 14   TCRYSRTVAGQFHGVSHLYYRKHKKSKVHCNSTTRTIHLYALVCYVLPPSLSCPSIGLES 193
            TC+   ++   +H    LYY     ++ +C +    I  +   CY + PS+      L  
Sbjct: 3916 TCQSWSSMTPHWHRRIPLYYPNAGLTRNYCRNPDAEIRPW---CYTMDPSVRWEYCNLTR 3972

Query: 194  NMPSPSSTSTLFHISPSPTAHAPNVPVVP 280
               + SS  T   ++P P+  AP+    P
Sbjct: 3973 CPVTESSVLTTPTVAPVPSTEAPSEQAPP 4001


>sp|Q7TN99|CPEB3_MOUSE Cytoplasmic polyadenylation element-binding
           protein 3 OS=Mus musculus GN=Cpeb3 PE=1 SV=1
          Length = 716

 Score = 30.4 bits (67), Expect = 2.8
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +2

Query: 155 PPSLSCPSIGLESNMPSPSSTSTLFHISPSPTAHAPNVP 271
           P +   PS  L S +P P  +S +  +SP+    APN P
Sbjct: 34  PGAAEAPSTPLSSEIPKPEDSSAVPALSPASAPPAPNGP 72


>sp|O13800|RDL1_SCHPO DNA repair protein rdl1 OS=Schizosaccharomyces
           pombe GN=rdl1 PE=1 SV=1
          Length = 230

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 15/57 (26%), Positives = 30/57 (52%)
 Frame = +2

Query: 74  RKHKKSKVHCNSTTRTIHLYALVCYVLPPSLSCPSIGLESNMPSPSSTSTLFHISPS 244
           ++H K  VHCN + + +   + +  +L  S +   + ++    +P S S+  H+SPS
Sbjct: 163 QQHNKCLVHCNQSRKDLLGCSQLFLLLKGSFTHEYLTIDFYNGTPVSVSSKLHVSPS 219


>sp|Q23933|DEC1_DROER Defective chorion-1 protein (Fragments)
           OS=Drosophila erecta GN=dec-1 PE=3 SV=2
          Length = 557

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +2

Query: 152 LPPSLSCPSI-GLESNMPSPSSTSTLFHISPSPTAHAPNVPV 274
           LPP  + PSI G  + +P+P+       ++P+P A  P  PV
Sbjct: 166 LPPMPAIPSILGAAAPVPAPAPAPAATPLAPAPAADPPAAPV 207


>sp|Q54QC0|MYBU_DICDI Myb-like protein U OS=Dictyostelium discoideum
            GN=mybU PE=4 SV=1
          Length = 2381

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = +2

Query: 149  VLPPSLSCPSIGLESNMPSPSSTSTLFHISPSPTAHAPNVPV 274
            +LP + S P+    S +P P+++ST + ++ S  +  P  P+
Sbjct: 1700 LLPSNSSIPNKSTPSPIPKPTTSSTTYPVTTSNPSSKPQTPI 1741


>sp|Q9BUN1|CA056_HUMAN Uncharacterized protein C1orf56 OS=Homo
           sapiens GN=C1orf56 PE=2 SV=1
          Length = 341

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 5/90 (5%)
 Frame = +2

Query: 26  SRTVAGQFHGVSHLYYRKHKKSKVHCNSTTRTIHLYALV--CYVLPPSLSCP---SIGLE 190
           SR+ +G+ HG+S        + +V   S  RT H       C        CP   S+  +
Sbjct: 219 SRSRSGKLHGLSG-------RLRVGALSQLRTEHKPCTYQQCPCNRLREECPLDTSLCTD 271

Query: 191 SNMPSPSSTSTLFHISPSPTAHAPNVPVVP 280
           +N  S S+TST    +P PT H  + P +P
Sbjct: 272 TNCASQSTTSTRTTTTPFPTIHLRSSPSLP 301
tr_hit_id B4N111
Definition tr|B4N111|B4N111_DROWI GK24858 OS=Drosophila willistoni
Align length 39
Score (bit) 35.8
E-value 1.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911533|Adiantum capillus-veneris mRNA, clone:
YMU001_000006_A10.
         (289 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B4N111|B4N111_DROWI GK24858 OS=Drosophila willistoni GN=GK248...    36   1.1  
tr|Q0TY70|Q0TY70_PHANO Putative uncharacterized protein OS=Phaeo...    36   1.1  
tr|Q8NIT4|Q8NIT4_NEUCR Putative uncharacterized protein B13H18.2...    35   1.9  
tr|Q29MX9|Q29MX9_DROPS GA16409 OS=Drosophila pseudoobscura pseud...    35   2.4  
tr|B6KFX7|B6KFX7_TOXGO Endonuclease/exonuclease/phosphatase doma...    35   2.4  
tr|B4G8K4|B4G8K4_DROPE GL18819 OS=Drosophila persimilis GN=GL188...    35   2.4  
tr|Q7RYC3|Q7RYC3_NEUCR Predicted protein OS=Neurospora crassa GN...    34   3.2  
tr|Q59FZ0|Q59FZ0_HUMAN LAMP1 protein variant (Fragment) OS=Homo ...    33   7.1  
tr|B3KRY3|B3KRY3_HUMAN cDNA FLJ35079 fis, clone PLACE6005283, hi...    33   7.1  
tr|Q7ZZ40|Q7ZZ40_DANRE Novel protein similar to human autism-rel...    33   9.3  
tr|Q4UFT9|Q4UFT9_THEAN SfiI-subtelomeric related protein family ...    33   9.3  

>tr|B4N111|B4N111_DROWI GK24858 OS=Drosophila willistoni GN=GK24858
           PE=4 SV=1
          Length = 301

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 18/39 (46%), Positives = 26/39 (66%)
 Frame = +2

Query: 170 CPSIGLESNMPSPSSTSTLFHISPSPTAHAPNVPVVPVS 286
           CP+   E + PS SS+ST   +S SP +HAP++ V P+S
Sbjct: 29  CPTSTQEEHKPSTSSSSTSSSLSSSPLSHAPSI-VCPMS 66


>tr|Q0TY70|Q0TY70_PHANO Putative uncharacterized protein
           OS=Phaeosphaeria nodorum GN=SNOG_15695 PE=4 SV=1
          Length = 178

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 7/45 (15%)
 Frame = +2

Query: 173 PSIGLESNMPSPSSTSTLFHISPSPTAHAP-------NVPVVPVS 286
           P +GL SNMP+P+   T F +SP P+A  P         P+VP+S
Sbjct: 48  PGLGLPSNMPAPTDVPT-FTLSPLPSASIPASASSGATTPMVPIS 91


>tr|Q8NIT4|Q8NIT4_NEUCR Putative uncharacterized protein B13H18.270
           (Predicted protein) OS=Neurospora crassa GN=B13H18.270
           PE=4 SV=1
          Length = 1133

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 18/42 (42%), Positives = 23/42 (54%)
 Frame = +2

Query: 155 PPSLSCPSIGLESNMPSPSSTSTLFHISPSPTAHAPNVPVVP 280
           PPS   PS  +    P+P S  TL+  SPSP + + N PV P
Sbjct: 435 PPS---PSASVRPEPPTPQSPPTLYRHSPSPPSKSSNQPVSP 473


>tr|Q29MX9|Q29MX9_DROPS GA16409 OS=Drosophila pseudoobscura
           pseudoobscura GN=GA16409 PE=4 SV=2
          Length = 672

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 7/66 (10%)
 Frame = +2

Query: 104 NSTTRTIHLYALVCYVLPPSLSCPSIG----LESNMPSPSSTSTL-FHISPSPTAH--AP 262
           N  T+TI +  + CY  PP  + P+ G    +E  +P+P+S S +   ++ SP A   AP
Sbjct: 539 NDATKTIEVEKIACYPAPPPEAAPANGTAPAVEGAVPAPASVSNVAAGVTQSPDAAHLAP 598

Query: 263 NVPVVP 280
             P  P
Sbjct: 599 FQPTTP 604


>tr|B6KFX7|B6KFX7_TOXGO Endonuclease/exonuclease/phosphatase
           domain-containing protein OS=Toxoplasma gondii ME49
           GN=TGME49_043590 PE=4 SV=1
          Length = 757

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
 Frame = +2

Query: 152 LPPSLSCPSIGLE---SNMPSPSSTSTLFHISPSPTAHAPNVPVV 277
           LPP L CPSI      +N  SPSS S+L  +SP+ ++  P+ P V
Sbjct: 254 LPPVLPCPSIDWHFERNNAFSPSSPSSLPSLSPAASSSVPSHPSV 298


>tr|B4G8K4|B4G8K4_DROPE GL18819 OS=Drosophila persimilis GN=GL18819
           PE=4 SV=1
          Length = 674

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 7/66 (10%)
 Frame = +2

Query: 104 NSTTRTIHLYALVCYVLPPSLSCPSIG----LESNMPSPSSTSTL-FHISPSPTAH--AP 262
           N  T+TI +  + CY  PP  + P+ G    +E  +P+P+S S +   ++ SP A   AP
Sbjct: 541 NDATKTIEVEKIACYPAPPPEAAPANGTAPAVEGAVPAPASVSNVAAGVTQSPDAAHLAP 600

Query: 263 NVPVVP 280
             P  P
Sbjct: 601 FQPTTP 606


>tr|Q7RYC3|Q7RYC3_NEUCR Predicted protein OS=Neurospora crassa
           GN=NCU04484 PE=4 SV=1
          Length = 632

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 13/62 (20%)
 Frame = +2

Query: 143 CYVLPPS--LSCPSIGLESNMPSPSSTST---LFHISPSPTAHAPNV--------PVVPV 283
           C  +P S  L  PS   +S  PS +S +T       +PSPTAH P++        PV+P 
Sbjct: 49  CPSIPSSFPLVTPSKDTDSTSPSTASATTPPSSLQATPSPTAHLPSIIKSRQPTTPVIPA 108

Query: 284 SF 289
           SF
Sbjct: 109 SF 110


>tr|Q59FZ0|Q59FZ0_HUMAN LAMP1 protein variant (Fragment) OS=Homo
           sapiens PE=2 SV=1
          Length = 392

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
 Frame = +2

Query: 71  YRKHKKSKVHCNSTTRTIHLYALVCYVLPPSLSCPSIGLESNMPSPSSTSTL-FHISPSP 247
           YR    ++VH N+ T T+H   +  Y+   S S      E + PSP++        SPSP
Sbjct: 142 YRCVSGTQVHMNNVTVTLHDATIQAYLSNSSFSRGETRCEQDRPSPTTAPPAPPSPSPSP 201

Query: 248 TAHAPNVPVVPVS 286
              +P+V    VS
Sbjct: 202 VPKSPSVDKYNVS 214


>tr|B3KRY3|B3KRY3_HUMAN cDNA FLJ35079 fis, clone PLACE6005283,
           highly similar to Lysosome-associated membrane
           glycoprotein 1 OS=Homo sapiens PE=2 SV=1
          Length = 395

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
 Frame = +2

Query: 71  YRKHKKSKVHCNSTTRTIHLYALVCYVLPPSLSCPSIGLESNMPSPSSTSTL-FHISPSP 247
           YR    ++VH N+ T T+H   +  Y+   S S      E + PSP++        SPSP
Sbjct: 131 YRCVSGTQVHMNNVTVTLHDATIQAYLSNSSFSRGETRCEQDRPSPTTAPPAPPSPSPSP 190

Query: 248 TAHAPNVPVVPVS 286
              +P+V    VS
Sbjct: 191 VPKSPSVDKYNVS 203


>tr|Q7ZZ40|Q7ZZ40_DANRE Novel protein similar to human
           autism-related protein 1 (AUTS2) (Fragment) OS=Danio
           rerio GN=auts2 PE=2 SV=1
          Length = 994

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 2/88 (2%)
 Frame = +2

Query: 23  YSRTVAGQFHGVSHLYYRKHKKSKVHCNSTTRTIHLYALVCYVLPPSLSCPSIGLES--N 196
           Y RT   +FH   H +  +H+ +  H +  T T   +A++    PP +  P+   E    
Sbjct: 245 YLRT---EFHQHQHQHQHQHQHTHQHTHQHTFTPFPHAIMPTPAPPMVRTPARNFEKYPT 301

Query: 197 MPSPSSTSTLFHISPSPTAHAPNVPVVP 280
              P    +LFH  P   +  P  PV+P
Sbjct: 302 KVDPFYRHSLFHSYPPAVSGIP--PVIP 327