BP911535
Clone id YMU001_000006_B01
Library
Length 453
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000006_B01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
CACCCAGACTTACACACCTGCACATTAAGCAGGGTAAGGAAAGGTAAACGAAAAACCAGA
AACAAACAAAGCAAAGACAGGAAGGCAAAAAGGAACGCAGACTGGTCCATCAACGTATAT
CAGGGATTCGGCAAGTTGACCAATTCTTGCACCTCCCAATGAACTCGTGGTCAAGAGTCA
GTAGAGTAATCTATGTCACCCAACAAAAAATAAATCTATCTATCTATCTCTCACAGCAGA
GACCACTTCTAATTTAAAAAGAAAAGAAGGAGCCTTACAAAACTGCAAATAATGAACCTT
ACGAAACTGCAATTGACAAAGAATCTACAGACAATTGCTGGCAGCATGCGTGAGCCCGCA
AATCGATAAGTACACTGCGCTTCGCAAGAAGCACAACGAGGCAGCCAATGGCTTGCGAGC
AGCCCTCTAGGGCGACGAACAGCGTGCATATTT
■■Homology search results ■■ -
sp_hit_id Q28F51
Definition sp|Q28F51|TADBP_XENTR TAR DNA-binding protein 43 OS=Xenopus tropicalis
Align length 36
Score (bit) 30.0
E-value 4.8
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP911535|Adiantum capillus-veneris mRNA, clone:
YMU001_000006_B01.
(453 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q28F51|TADBP_XENTR TAR DNA-binding protein 43 OS=Xenopus trop... 30 4.8

>sp|Q28F51|TADBP_XENTR TAR DNA-binding protein 43 OS=Xenopus
tropicalis GN=tardbp PE=2 SV=1
Length = 409

Score = 30.0 bits (66), Expect = 4.8
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +3

Query: 84 GKKERRLVHQRISGIRQVDQFLHLPMNSWSRVSRVI 191
G + R V+Q + G+R V+ LH P N W + V+
Sbjct: 41 GLRYRNPVNQCMRGVRLVEGILHAPENGWGNLVYVV 76


tr_hit_id B0I545
Definition tr|B0I545|B0I545_ZINEL Cellulose synthase Z632 OS=Zinnia elegans
Align length 34
Score (bit) 32.7
E-value 9.3
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP911535|Adiantum capillus-veneris mRNA, clone:
YMU001_000006_B01.
(453 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|B0I545|B0I545_ZINEL Cellulose synthase Z632 OS=Zinnia elegans... 33 9.3

>tr|B0I545|B0I545_ZINEL Cellulose synthase Z632 OS=Zinnia elegans
GN=Z632 PE=2 SV=1
Length = 1090

Score = 32.7 bits (73), Expect = 9.3
Identities = 16/34 (47%), Positives = 22/34 (64%)
Frame = +1

Query: 19 CTLSRVRKGKRKTRNKQSKDRKAKRNADWSINVY 120
C LSR +KGK K++ K K +K+K D SI +Y
Sbjct: 676 CCLSRKKKGKGKSKEKSIKSKKSK---DMSIQIY 706