BP911542 |
Clone id |
YMU001_000006_B08 |
Library |
YMU01 |
Length |
555 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000006_B08. |
Accession |
BP911542 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
- |
Sequence |
TGCAGAATGTAGACTCACTGTGAGGGAAAAGAAGCTTGTGGATTTTAGAGGCAAGCTGTA TGTGGCGCCCTTGACAACAGTAGGAAACCTTCCGTTTCGAAGAGTATGTAAGCAGTTAGG AGCTGACATCACTTGTGGTGAAATGGCAATGTGCACCAATTTACTTCAGGGCCAGGCTTC GGAATGGGCTCTACTGAGACGACATCGCAGTGAAGATTTGTTTGGGGTTCAAATTTGTGG AGCTTATCCGGATACTGTAGCTCGTACAGCTGAGATGATTGAGAAAGAATCTGAGGTTGA TTTTATTGATATTAATGTGGGCTGTCCGATAGACCTCGTTGTTAATAAGGGTGCTGGATC TTGCTTGCTCACAAAGCCAACCAGATTAAAACAGATTGTGATGGCAACCTCGGGTTCACT TGATACTCCCCTAACAGTAAAGGAGCGCATGGGTTACTATGAAGGGAAAAATTGTGTTCA ATCGTTTATTGGTGACATTCATGATTGGGGCGCTTCTGCCTTAACCATCCATGGGAGGAC ACGCCAACAGCGGTA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q7XT07 |
Definition |
sp|Q7XT07|DUS3L_ORYSJ tRNA-dihydrouridine synthase 3-like OS=Oryza sativa subsp. japonica |
Align length |
178 |
Score (bit) |
286.0 |
E-value |
5.0e-77 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A7P7Z5 |
Definition |
tr|A7P7Z5|A7P7Z5_VITVI Chromosome chr3 scaffold_8, whole genome shotgun sequence OS=Vitis vinifera |
Align length |
181 |
Score (bit) |
290.0 |
E-value |
4.0e-77 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP911542|Adiantum capillus-veneris mRNA, clone: YMU001_000006_B08. (555 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A7P7Z5|A7P7Z5_VITVI Chromosome chr3 scaffold_8, whole genome ... 290 4e-77 tr|Q01ML2|Q01ML2_ORYSA H0613H07.1 protein OS=Oryza sativa GN=H06... 286 5e-76 tr|A2XPT3|A2XPT3_ORYSI Putative uncharacterized protein OS=Oryza... 286 5e-76 tr|B7ZX41|B7ZX41_MAIZE Putative uncharacterized protein OS=Zea m... 281 2e-74 tr|Q9T0J6|Q9T0J6_ARATH Putative uncharacterized protein AT4g3889... 274 2e-72 tr|A7S213|A7S213_NEMVE Predicted protein OS=Nematostella vectens... 246 4e-64 tr|Q6PEH0|Q6PEH0_DANRE Zgc:63779 OS=Danio rerio GN=zgc:63779 PE=... 234 3e-60 tr|B2RDV7|B2RDV7_HUMAN cDNA, FLJ96789, highly similar to Homo sa... 232 9e-60 tr|B5X496|B5X496_SALSA tRNA-dihydrouridine synthase 3-like OS=Sa... 231 2e-59 tr|A4RQU5|A4RQU5_OSTLU Predicted protein OS=Ostreococcus lucimar... 230 3e-59 tr|B6N9V3|B6N9V3_BRAFL Putative uncharacterized protein OS=Branc... 229 7e-59 tr|B6N4N1|B6N4N1_BRAFL Putative uncharacterized protein OS=Branc... 229 7e-59 tr|B3RKU4|B3RKU4_TRIAD Putative uncharacterized protein OS=Trich... 229 7e-59 tr|Q1RLG4|Q1RLG4_CIOIN Zinc finger protein OS=Ciona intestinalis... 223 4e-57 tr|A9UV62|A9UV62_MONBE Predicted protein (Fragment) OS=Monosiga ... 211 3e-53 tr|A4S3Q5|A4S3Q5_OSTLU Predicted protein (Fragment) OS=Ostreococ... 210 4e-53 tr|Q010A0|Q010A0_OSTTA tRNA-dihydrouridine synthase (ISS) OS=Ost... 206 5e-52 tr|B7G230|B7G230_PHATR Predicted protein (Fragment) OS=Phaeodact... 206 5e-52 tr|Q4RLC5|Q4RLC5_TETNG Chromosome 21 SCAF15022, whole genome sho... 204 3e-51 tr|B3ML63|B3ML63_DROAN GF14432 OS=Drosophila ananassae GN=GF1443... 199 8e-50 tr|Q29K05|Q29K05_DROPS GA10329 OS=Drosophila pseudoobscura pseud... 198 1e-49 tr|B4GKW1|B4GKW1_DROPE GL26174 OS=Drosophila persimilis GN=GL261... 198 1e-49 tr|B4JR71|B4JR71_DROGR GH13829 OS=Drosophila grimshawi GN=GH1382... 198 2e-49 tr|B8BWN9|B8BWN9_THAPS Predicted protein (Fragment) OS=Thalassio... 196 7e-49 tr|Q7PVV7|Q7PVV7_ANOGA AGAP009171-PA (Fragment) OS=Anopheles gam... 196 7e-49 tr|B4KHW6|B4KHW6_DROMO GI20204 OS=Drosophila mojavensis GN=GI202... 195 2e-48 tr|B4QA27|B4QA27_DROSI GD24232 OS=Drosophila simulans GN=GD24232... 194 2e-48 tr|B4I5Z7|B4I5Z7_DROSE GM17377 OS=Drosophila sechellia GN=GM1737... 194 2e-48 tr|B3NL35|B3NL35_DROER GG21206 OS=Drosophila erecta GN=GG21206 P... 194 2e-48 tr|B4PB28|B4PB28_DROYA GE13280 OS=Drosophila yakuba GN=GE13280 P... 193 5e-48
>tr|A7P7Z5|A7P7Z5_VITVI Chromosome chr3 scaffold_8, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00035978001 PE=4 SV=1 Length = 678
Score = 290 bits (742), Expect = 4e-77 Identities = 138/181 (76%), Positives = 157/181 (86%) Frame = +2
Query: 11 RLTVREKKLVDFRGKLYVAPLTTVGNLPFRRVCKQLGADITCGEMAMCTNLLQGQASEWA 190 +L REKKL+DFR KLY+APLTTVGNLPFRRVCK LGAD+TCGEMAMCTNLLQGQASEWA Sbjct: 312 KLHPREKKLIDFREKLYLAPLTTVGNLPFRRVCKMLGADVTCGEMAMCTNLLQGQASEWA 371
Query: 191 LLRRHRSEDLFGVQICGAYPDTVARTAEMIEKESEVDFIDINVGCPIDLVVNKGAGSCLL 370 LLRRH +EDLFGVQICGAYPDTVART E+I++E EVDFIDIN+GCPID+VVNKGAGS LL Sbjct: 372 LLRRHSAEDLFGVQICGAYPDTVARTVELIDQECEVDFIDINMGCPIDIVVNKGAGSALL 431
Query: 371 TKPTRLKQIVMATSGSLDTPLTVKERMGYYEGKNCVQSFIGDIHDWGASALTIHGRTRQQ 550 TKP R+K I+ A SG +D P+TVK R G+ EG+N V S I DI WGA+ +TIHGR+RQQ Sbjct: 432 TKPMRMKNIIEAASGIVDKPITVKVRTGFLEGRNRVDSLIADIGQWGANVVTIHGRSRQQ 491
Query: 551 R 553 R Sbjct: 492 R 492
>tr|Q01ML2|Q01ML2_ORYSA H0613H07.1 protein OS=Oryza sativa GN=H0613H07.1 PE=4 SV=1 Length = 685
Score = 286 bits (732), Expect = 5e-76 Identities = 134/178 (75%), Positives = 154/178 (86%) Frame = +2
Query: 20 VREKKLVDFRGKLYVAPLTTVGNLPFRRVCKQLGADITCGEMAMCTNLLQGQASEWALLR 199 +REKK++DFR KLY+APLTTVGNLPFRR+CK LGADITCGEMAMCTNLLQGQASEWALLR Sbjct: 322 LREKKIIDFREKLYLAPLTTVGNLPFRRLCKTLGADITCGEMAMCTNLLQGQASEWALLR 381
Query: 200 RHRSEDLFGVQICGAYPDTVARTAEMIEKESEVDFIDINVGCPIDLVVNKGAGSCLLTKP 379 RH SEDLFGVQICGAYPDTVART E+++ E VDFIDIN+GCPID+VVNKGAGS LLTKP Sbjct: 382 RHSSEDLFGVQICGAYPDTVARTVELVDNECSVDFIDINMGCPIDIVVNKGAGSSLLTKP 441
Query: 380 TRLKQIVMATSGSLDTPLTVKERMGYYEGKNCVQSFIGDIHDWGASALTIHGRTRQQR 553 R+K IV A S + PLTVK R ++EG+N S + DI+DWGASA+T+HGR+RQQR Sbjct: 442 MRIKSIVQAASTVTEKPLTVKVRTAFFEGRNRADSIVSDIYDWGASAITVHGRSRQQR 499
>tr|A2XPT3|A2XPT3_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_14644 PE=4 SV=1 Length = 685
Score = 286 bits (732), Expect = 5e-76 Identities = 134/178 (75%), Positives = 154/178 (86%) Frame = +2
Query: 20 VREKKLVDFRGKLYVAPLTTVGNLPFRRVCKQLGADITCGEMAMCTNLLQGQASEWALLR 199 +REKK++DFR KLY+APLTTVGNLPFRR+CK LGADITCGEMAMCTNLLQGQASEWALLR Sbjct: 322 LREKKIIDFREKLYLAPLTTVGNLPFRRLCKTLGADITCGEMAMCTNLLQGQASEWALLR 381
Query: 200 RHRSEDLFGVQICGAYPDTVARTAEMIEKESEVDFIDINVGCPIDLVVNKGAGSCLLTKP 379 RH SEDLFGVQICGAYPDTVART E+++ E VDFIDIN+GCPID+VVNKGAGS LLTKP Sbjct: 382 RHSSEDLFGVQICGAYPDTVARTVELVDNECSVDFIDINMGCPIDIVVNKGAGSSLLTKP 441
Query: 380 TRLKQIVMATSGSLDTPLTVKERMGYYEGKNCVQSFIGDIHDWGASALTIHGRTRQQR 553 R+K IV A S + PLTVK R ++EG+N S + DI+DWGASA+T+HGR+RQQR Sbjct: 442 MRIKSIVQAASTVTEKPLTVKVRTAFFEGRNRADSIVSDIYDWGASAITVHGRSRQQR 499
>tr|B7ZX41|B7ZX41_MAIZE Putative uncharacterized protein OS=Zea mays PE=2 SV=1 Length = 686
Score = 281 bits (718), Expect = 2e-74 Identities = 131/178 (73%), Positives = 153/178 (85%) Frame = +2
Query: 20 VREKKLVDFRGKLYVAPLTTVGNLPFRRVCKQLGADITCGEMAMCTNLLQGQASEWALLR 199 +REKK++DFR KLY+APLTTVGNLPFRR+CK LGAD+TCGEMAMCTNLLQGQASEWALLR Sbjct: 323 LREKKIIDFREKLYLAPLTTVGNLPFRRLCKTLGADVTCGEMAMCTNLLQGQASEWALLR 382
Query: 200 RHRSEDLFGVQICGAYPDTVARTAEMIEKESEVDFIDINVGCPIDLVVNKGAGSCLLTKP 379 RH SEDLFGVQICG YPDTVART E+++ E VDFIDIN+GCPID+VVNKGAGS LLTKP Sbjct: 383 RHPSEDLFGVQICGPYPDTVARTVELVDNECSVDFIDINMGCPIDIVVNKGAGSSLLTKP 442
Query: 380 TRLKQIVMATSGSLDTPLTVKERMGYYEGKNCVQSFIGDIHDWGASALTIHGRTRQQR 553 R++ IV A S + PLTVK R ++EG+N S + DI++WGASA+TIHGR+RQQR Sbjct: 443 MRIRSIVQAASTVTEKPLTVKVRTAFFEGRNRADSLVSDIYNWGASAITIHGRSRQQR 500
>tr|Q9T0J6|Q9T0J6_ARATH Putative uncharacterized protein AT4g38890 OS=Arabidopsis thaliana GN=AT4g38890 PE=2 SV=1 Length = 700
Score = 274 bits (701), Expect = 2e-72 Identities = 127/176 (72%), Positives = 152/176 (86%) Frame = +2
Query: 26 EKKLVDFRGKLYVAPLTTVGNLPFRRVCKQLGADITCGEMAMCTNLLQGQASEWALLRRH 205 +KKL+DFR KLY+APLTTVGNLPFRR+CK LGAD+TCGEMAMCTNLLQGQASEWALLRRH Sbjct: 339 KKKLIDFRDKLYLAPLTTVGNLPFRRLCKVLGADVTCGEMAMCTNLLQGQASEWALLRRH 398
Query: 206 RSEDLFGVQICGAYPDTVARTAEMIEKESEVDFIDINVGCPIDLVVNKGAGSCLLTKPTR 385 SEDLFGVQICG+YPDTV+R E+I++E VDFIDIN+GCPID+VVNK AGS LL KP R Sbjct: 399 SSEDLFGVQICGSYPDTVSRVVELIDRECTVDFIDINMGCPIDMVVNKSAGSALLNKPLR 458
Query: 386 LKQIVMATSGSLDTPLTVKERMGYYEGKNCVQSFIGDIHDWGASALTIHGRTRQQR 553 +K IV +S ++TP+T+K R ++EGKN + S I DI +WGA+A+TIHGR+RQQR Sbjct: 459 MKNIVEVSSSIVETPITIKVRTAFFEGKNRIDSLIADIGNWGATAVTIHGRSRQQR 514
>tr|A7S213|A7S213_NEMVE Predicted protein OS=Nematostella vectensis GN=v1g229208 PE=4 SV=1 Length = 570
Score = 246 bits (629), Expect = 4e-64 Identities = 113/183 (61%), Positives = 144/183 (78%), Gaps = 2/183 (1%) Frame = +2
Query: 11 RLTVREKKLVDFRGKLYVAPLTTVGNLPFRRVCKQLGADITCGEMAMCTNLLQGQASEWA 190 +L +EKK +DF KLY+APLTT+GNLPFRR+CKQ GADITCGEMAMCTNLLQGQ SEWA Sbjct: 205 KLRTQEKKRIDFSDKLYLAPLTTIGNLPFRRICKQYGADITCGEMAMCTNLLQGQQSEWA 264
Query: 191 LLRRHRSEDLFGVQICGAYPDTVARTAEMIEKESEVDFIDINVGCPIDLVVNKGAGSCLL 370 L++RH SED+FGVQ+CGA+PDT+ + AE+++KE++VDFIDIN GCPIDLV NKGAGS L+ Sbjct: 265 LVKRHSSEDIFGVQLCGAFPDTMTKCAELLQKETDVDFIDINTGCPIDLVFNKGAGSALM 324
Query: 371 TKPTRLKQIVMATSGSLDTPLTVKERMGYYEGKNC--VQSFIGDIHDWGASALTIHGRTR 544 + +L+QIV +D PLTVK R G ++ K +G++ DWG +TIHGR+R Sbjct: 325 ERKGKLQQIVQGMKSVIDIPLTVKIRAGIHDKKYTWNAHKLVGNLRDWGTDMVTIHGRSR 384
Query: 545 QQR 553 +QR Sbjct: 385 EQR 387
>tr|Q6PEH0|Q6PEH0_DANRE Zgc:63779 OS=Danio rerio GN=zgc:63779 PE=2 SV=1 Length = 660
Score = 234 bits (596), Expect = 3e-60 Identities = 110/176 (62%), Positives = 134/176 (76%) Frame = +2
Query: 26 EKKLVDFRGKLYVAPLTTVGNLPFRRVCKQLGADITCGEMAMCTNLLQGQASEWALLRRH 205 EKK VDFR KLY+APLTT GNLPFRRVCK+ GADITCGEMAMCTNLLQGQASEWALL+RH Sbjct: 307 EKKQVDFRDKLYLAPLTTCGNLPFRRVCKRFGADITCGEMAMCTNLLQGQASEWALLKRH 366
Query: 206 RSEDLFGVQICGAYPDTVARTAEMIEKESEVDFIDINVGCPIDLVVNKGAGSCLLTKPTR 385 SEDLFGVQ+ G +PDT+ R AE++ + +VDF+DIN GCPIDLV KG G L+T+ ++ Sbjct: 367 ASEDLFGVQLEGCFPDTMTRCAELLNQNIDVDFVDINSGCPIDLVYKKGGGCGLMTRTSK 426
Query: 386 LKQIVMATSGSLDTPLTVKERMGYYEGKNCVQSFIGDIHDWGASALTIHGRTRQQR 553 +QIV + LD PLTVK R G + N I ++ WG S +T+HGR+R+QR Sbjct: 427 FEQIVRGMNSVLDVPLTVKIRTGVQQNSNIAHKLIPEMKKWGVSLITLHGRSREQR 482
>tr|B2RDV7|B2RDV7_HUMAN cDNA, FLJ96789, highly similar to Homo sapiens dihydrouridine synthase 3-like (S. cerevisiae) (DUS3L), mRNA OS=Homo sapiens PE=2 SV=1 Length = 650
Score = 232 bits (592), Expect = 9e-60 Identities = 107/181 (59%), Positives = 137/181 (75%) Frame = +2
Query: 11 RLTVREKKLVDFRGKLYVAPLTTVGNLPFRRVCKQLGADITCGEMAMCTNLLQGQASEWA 190 RL EKK +D RGKLY+APLTT GNLPFRR+CK+ GAD+TCGEMA+CTNLLQGQ SEWA Sbjct: 292 RLRPCEKKRLDIRGKLYLAPLTTCGNLPFRRICKRFGADVTCGEMAVCTNLLQGQMSEWA 351
Query: 191 LLRRHRSEDLFGVQICGAYPDTVARTAEMIEKESEVDFIDINVGCPIDLVVNKGAGSCLL 370 LL+RH+ ED+FGVQ+ GA+PDT+ + AE++ + EVDF+DINVGCPIDLV KG G L+ Sbjct: 352 LLKRHQCEDIFGVQLEGAFPDTMTKCAELLSRTVEVDFVDINVGCPIDLVYKKGGGCALM 411
Query: 371 TKPTRLKQIVMATSGSLDTPLTVKERMGYYEGKNCVQSFIGDIHDWGASALTIHGRTRQQ 550 + T+ +QIV + LD PLTVK R G E N + ++ DWG + +T+HGR+R+Q Sbjct: 412 NRSTKFQQIVRGMNQVLDVPLTVKIRTGVQERVNLAHRLLPELRDWGVALVTLHGRSREQ 471
Query: 551 R 553 R Sbjct: 472 R 472
>tr|B5X496|B5X496_SALSA tRNA-dihydrouridine synthase 3-like OS=Salmo salar GN=DUS3L PE=2 SV=1 Length = 654
Score = 231 bits (589), Expect = 2e-59 Identities = 107/176 (60%), Positives = 133/176 (75%) Frame = +2
Query: 26 EKKLVDFRGKLYVAPLTTVGNLPFRRVCKQLGADITCGEMAMCTNLLQGQASEWALLRRH 205 EKK VDF+ KLY+APLTT GNLPFRR+CK+ GADITCGEMAMCTNLLQGQ+SEWALL+RH Sbjct: 301 EKKQVDFKDKLYLAPLTTCGNLPFRRICKRFGADITCGEMAMCTNLLQGQSSEWALLKRH 360
Query: 206 RSEDLFGVQICGAYPDTVARTAEMIEKESEVDFIDINVGCPIDLVVNKGAGSCLLTKPTR 385 SEDLFGVQ+ G +PDT+ R AE++ + +VDF+DIN GCPIDLV KG G L+T+ + Sbjct: 361 ESEDLFGVQVEGCFPDTMTRCAELLNNKIDVDFVDINSGCPIDLVYKKGGGCGLMTRTNK 420
Query: 386 LKQIVMATSGSLDTPLTVKERMGYYEGKNCVQSFIGDIHDWGASALTIHGRTRQQR 553 +QI+ + LD PLTVK R G E N I ++ WG S +T+HGR+R+QR Sbjct: 421 FEQIIRGMNSVLDVPLTVKIRTGVQEKANIAHKLIPEMKKWGVSMITLHGRSREQR 476
>tr|A4RQU5|A4RQU5_OSTLU Predicted protein OS=Ostreococcus lucimarinus (strain CCE9901) GN=OSTLU_86070 PE=4 SV=1 Length = 608
Score = 230 bits (587), Expect = 3e-59 Identities = 108/179 (60%), Positives = 136/179 (75%), Gaps = 1/179 (0%) Frame = +2
Query: 20 VREKKLVDFRGKLYVAPLTTVGNLPFRRVCKQLGADITCGEMAMCTNLLQGQASEWALLR 199 V EK+ +DF+ KLY+APLTTVGNLPFRRVCK LGADITCGEMA+CT+LLQG SEWALLR Sbjct: 237 VEEKRTIDFKDKLYLAPLTTVGNLPFRRVCKTLGADITCGEMALCTSLLQGLPSEWALLR 296
Query: 200 RHRSEDLFGVQICGAYPDTVARTAEMIEKESEVDFIDINVGCPIDLVVNKGAGSCLLTKP 379 RH+SED+FGVQICG YPD+V R +++E +VDFIDIN+GCPID V KG GS +L KP Sbjct: 297 RHKSEDIFGVQICGGYPDSVTRCCQLLEDTIDVDFIDINMGCPIDSVCQKGYGSMMLEKP 356
Query: 380 TRLKQIVMATSGSL-DTPLTVKERMGYYEGKNCVQSFIGDIHDWGASALTIHGRTRQQR 553 +++ ++ A S +L LT K RM Y + +F + +WGA+A+T+HGRTR QR Sbjct: 357 KKMETVIRAASAALGKCSLTFKTRMAYTDKSRVAHTFAPKVAEWGAAAMTLHGRTRAQR 415
|