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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP911544
Clone id YMU001_000006_B11
Library
Length 613
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000006_B11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GAGGAAGAGGAATACGCATACACAAACACTTCCATAGCCACACACACAGGTTGGAGGGGG
AGATCCGACACACACTGTGTGCCCCCTTTCTTTCTTCTCTATCTTATGGACTTAGGCACA
ATACACACTCTACTTAGTGTTAGTGACTCACACAAGTATATAGTTGTACGCTTAGGGTTA
GTAGCAATTAGTGATGGGCGGTCGGCCACATGGCCATTAAACCTAACATTCTCCCACTTG
ATGGCCAATGTGGGAGACCACAAGAATGGAAGAGAACCACTCTTCACCCAATGCCCATCA
CCTCATGACAGTGCTGAAACTGATGGTTGGAGAGACTTTTAGTGAGTGCATCCGCTGTGT
TCTCTGATGTAGGAATCTTCATTAAATCAAGGCTCTTATTTTCCAGGCATTCACGACTAA
AGTGATAACGCACATCAATGTGTTTTGTTCTGGGATGAAACATTGGATTGTTGGCCAAGC
AATAGCACTCTGACTGTCACAATGAAGAATTGGTGTACACTGCTCCAATCCAAGATCTTT
CACTAGGCGAGAAAGTCAAATAGCTTCATTGCATGCCTCAATCAATGCAACATACATACT
CTGCCTCTGTGGT
■■Homology search results ■■ -
sp_hit_id P10978
Definition sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum
Align length 117
Score (bit) 80.1
E-value 8.0e-15
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911544|Adiantum capillus-veneris mRNA, clone:
YMU001_000006_B11.
         (613 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from tra...    80   8e-15
sp|P04146|COPIA_DROME Copia protein OS=Drosophila melanogaster G...    62   2e-09

>sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from
            transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1
          Length = 1328

 Score = 80.1 bits (196), Expect = 8e-15
 Identities = 46/117 (39%), Positives = 66/117 (56%), Gaps = 9/117 (7%)
 Frame = -1

Query: 613  TTEAEYVCCID*GMQ*SYLTFSPSERSWIGAVYTNSSL*QSE--CYC-------LANNPM 461
            TTEAEY+   + G           E  W+        L Q E   YC       L+ N M
Sbjct: 1219 TTEAEYIAATETG----------KEMIWLKRFLQELGLHQKEYVVYCDSQSAIDLSKNSM 1268

Query: 460  FHPRTKHIDVRYHFSRECLENKSLDLMKIPTSENTADALTKSLSNHQFQHCHEVMGI 290
            +H RTKHIDVRYH+ RE ++++SL ++KI T+EN AD LTK +  ++F+ C E++G+
Sbjct: 1269 YHARTKHIDVRYHWIREMVDDESLKVLKISTNENPADMLTKVVPRNKFELCKELVGM 1325


>sp|P04146|COPIA_DROME Copia protein OS=Drosophila melanogaster GN=GIP
            PE=1 SV=3
          Length = 1409

 Score = 62.4 bits (150), Expect = 2e-09
 Identities = 28/66 (42%), Positives = 39/66 (59%)
 Frame = -1

Query: 487  CYCLANNPMFHPRTKHIDVRYHFSRECLENKSLDLMKIPTSENTADALTKSLSNHQFQHC 308
            C  +ANNP  H R KHID++YHF+RE ++N  + L  IPT    AD  TK L   +F   
Sbjct: 1335 CISIANNPSCHKRAKHIDIKYHFAREQVQNNVICLEYIPTENQLADIFTKPLPAARFVEL 1394

Query: 307  HEVMGI 290
             + +G+
Sbjct: 1395 RDKLGL 1400
tr_hit_id Q0ZCC2
Definition tr|Q0ZCC2|Q0ZCC2_POPTR CCHC-type integrase OS=Populus trichocarpa
Align length 58
Score (bit) 70.5
E-value 4.0e-16
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911544|Adiantum capillus-veneris mRNA, clone:
YMU001_000006_B11.
         (613 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q0ZCC2|Q0ZCC2_POPTR CCHC-type integrase OS=Populus trichocarp...    70   4e-16
tr|A5AQ94|A5AQ94_VITVI Putative uncharacterized protein OS=Vitis...    67   2e-15
tr|B8YLY7|B8YLY7_LOTJA Gag-Pol polyprotein OS=Lotus japonicus PE...    67   9e-15
tr|Q7M1E4|Q7M1E4_ARATH Retrovirus-related reverse transcriptase ...    80   9e-14
tr|A5AKC5|A5AKC5_VITVI Putative uncharacterized protein OS=Vitis...    57   1e-13
tr|A5BET6|A5BET6_VITVI Putative uncharacterized protein OS=Vitis...    62   2e-13
tr|A5C541|A5C541_VITVI Putative uncharacterized protein OS=Vitis...    62   5e-13
tr|A5BUV3|A5BUV3_VITVI Putative uncharacterized protein OS=Vitis...    60   1e-12
tr|Q0JGC1|Q0JGC1_ORYSJ Os01g0931000 protein OS=Oryza sativa subs...    66   4e-12
tr|O81903|O81903_ARATH Putative transposable element OS=Arabidop...    56   4e-12
tr|A5BCR7|A5BCR7_VITVI Putative uncharacterized protein OS=Vitis...    59   4e-12
tr|A5BEP3|A5BEP3_VITVI Putative uncharacterized protein OS=Vitis...    61   5e-12
tr|B8YLY4|B8YLY4_MEDTR Gag-Pol polyprotein OS=Medicago truncatul...    74   5e-12
tr|A5BHK6|A5BHK6_VITVI Putative uncharacterized protein OS=Vitis...    59   6e-12
tr|Q7XPB1|Q7XPB1_ORYSJ Os04g0196500 protein OS=Oryza sativa subs...    66   2e-11
tr|Q2QLK1|Q2QLK1_ORYSJ Retrotransposon protein, putative, unclas...    56   2e-11
tr|Q8W3A4|Q8W3A4_ORYSA Putative gag-pol polyprotein OS=Oryza sat...    56   2e-11
tr|Q10KL1|Q10KL1_ORYSJ Retrotransposon protein, putative, unclas...    56   2e-11
tr|Q84VH6|Q84VH6_SOYBN Gag-pol polyprotein OS=Glycine max GN=gag...    59   2e-11
tr|Q84VI4|Q84VI4_SOYBN Gag-pol polyprotein OS=Glycine max GN=gag...    59   2e-11
tr|Q84VI2|Q84VI2_SOYBN Gag-pol polyprotein OS=Glycine max GN=gag...    59   2e-11
tr|Q84VH8|Q84VH8_SOYBN Gag-pol polyprotein OS=Glycine max GN=gag...    59   2e-11
tr|Q7Y141|Q7Y141_ORYSJ Putative polyprotein (Retrotransposon pro...    56   2e-11
tr|Q2QXM6|Q2QXM6_ORYSJ Retrotransposon protein, putative, unclas...    56   2e-11
tr|Q8SAW7|Q8SAW7_ORYSJ Os10g0162200 protein OS=Oryza sativa subs...    65   3e-11
tr|A5ACQ7|A5ACQ7_VITVI Putative uncharacterized protein OS=Vitis...    61   3e-11
tr|A0B9X7|A0B9X7_ORYSA OSIGBa0135C09.3 protein OS=Oryza sativa G...    66   4e-11
tr|O65147|O65147_SOYBN Gag-pol polyprotein OS=Glycine max GN=pol...    59   5e-11
tr|A5AJF5|A5AJF5_VITVI Putative uncharacterized protein OS=Vitis...    53   7e-11
tr|A5BMJ8|A5BMJ8_VITVI Putative uncharacterized protein OS=Vitis...    56   7e-11

>tr|Q0ZCC2|Q0ZCC2_POPTR CCHC-type integrase OS=Populus trichocarpa
           PE=2 SV=1
          Length = 353

 Score = 70.5 bits (171), Expect(2) = 4e-16
 Identities = 32/58 (55%), Positives = 41/58 (70%)
 Frame = -1

Query: 481 CLANNPMFHPRTKHIDVRYHFSRECLENKSLDLMKIPTSENTADALTKSLSNHQFQHC 308
           CLA N + H RTKHIDVR+HF RE ++   + L KI T++N AD LTK +S  +FQHC
Sbjct: 38  CLAKNQVHHSRTKHIDVRFHFVREIVDEGDILLQKIGTADNPADMLTKCVSGIKFQHC 95



 Score = 37.4 bits (85), Expect(2) = 4e-16
 Identities = 20/37 (54%), Positives = 26/37 (70%)
 Frame = -2

Query: 591 VALIEACNEAI*LSRLVKDLGLEQCTPILHCDSQSAI 481
           +A+ EA  EAI L  L++DLG+ Q    +HCDSQSAI
Sbjct: 1   MAVTEAFKEAIWLHGLIEDLGIVQEHVDVHCDSQSAI 37


>tr|A5AQ94|A5AQ94_VITVI Putative uncharacterized protein OS=Vitis
            vinifera GN=VITISV_017821 PE=4 SV=1
          Length = 939

 Score = 67.4 bits (163), Expect(2) = 2e-15
 Identities = 30/65 (46%), Positives = 42/65 (64%)
 Frame = -1

Query: 481  CLANNPMFHPRTKHIDVRYHFSRECLENKSLDLMKIPTSENTADALTKSLSNHQFQHCHE 302
            CL  N  FH RTKHIDVR+HF R+  E   +++ KI T +N AD LTK +S  +F+ C  
Sbjct: 873  CLTKNQGFHERTKHIDVRFHFIRDIAEQGLVNVSKISTKDNPADMLTKPISKVKFKQCLN 932

Query: 301  VMGIG 287
            ++ +G
Sbjct: 933  LINVG 937



 Score = 38.1 bits (87), Expect(2) = 2e-15
 Identities = 21/46 (45%), Positives = 27/46 (58%)
 Frame = -2

Query: 594 YVALIEACNEAI*LSRLVKDLGLEQCTPILHCDSQSAIAWPTIQCF 457
           YVA  EA  EA+ L  LV +LG+ Q +  + CDSQSA+     Q F
Sbjct: 835 YVAAAEATKEALWLKGLVSELGMNQKSVTVFCDSQSALCLTKNQGF 880


>tr|B8YLY7|B8YLY7_LOTJA Gag-Pol polyprotein OS=Lotus japonicus PE=4
            SV=1
          Length = 1305

 Score = 66.6 bits (161), Expect(2) = 9e-15
 Identities = 29/63 (46%), Positives = 42/63 (66%)
 Frame = -1

Query: 478  LANNPMFHPRTKHIDVRYHFSRECLENKSLDLMKIPTSENTADALTKSLSNHQFQHCHEV 299
            +A NP FH RTKHI V+YHF RE +E  S+++ KI T +N AD +TK +++ +F  C   
Sbjct: 1240 IARNPAFHSRTKHIGVQYHFVREVVEEGSVNMQKIHTKDNLADVMTKPINSDKFIWCRSS 1299

Query: 298  MGI 290
             G+
Sbjct: 1300 YGL 1302



 Score = 36.6 bits (83), Expect(2) = 9e-15
 Identities = 17/41 (41%), Positives = 28/41 (68%)
 Frame = -2

Query: 603  QSMYVALIEACNEAI*LSRLVKDLGLEQCTPILHCDSQSAI 481
            ++ Y+A  +AC EAI   RL+++LG +Q    ++CDS SA+
Sbjct: 1198 EAEYMAATQACKEAIWTQRLLEELGHKQQKITVYCDSPSAL 1238


>tr|Q7M1E4|Q7M1E4_ARATH Retrovirus-related reverse transcriptase
           homolog (Fragment) OS=Arabidopsis thaliana PE=4 SV=1
          Length = 112

 Score = 80.1 bits (196), Expect = 9e-14
 Identities = 46/117 (39%), Positives = 66/117 (56%), Gaps = 9/117 (7%)
 Frame = -1

Query: 613 TTEAEYVCCID*GMQ*SYLTFSPSERSWIGAVYTNSSL*QSE--CYC-------LANNPM 461
           TTEAEY+   + G           E  W+        L Q E   YC       L+ N M
Sbjct: 3   TTEAEYIAATETG----------KEMIWLKRFLQELGLHQKEYVVYCDSQSAIDLSKNSM 52

Query: 460 FHPRTKHIDVRYHFSRECLENKSLDLMKIPTSENTADALTKSLSNHQFQHCHEVMGI 290
           +H RTKHIDVRYH+ RE ++++SL ++KI T+EN AD LTK +  ++F+ C E++G+
Sbjct: 53  YHARTKHIDVRYHWIREMVDDESLKVLKISTNENPADMLTKVVPRNKFELCKELVGM 109


>tr|A5AKC5|A5AKC5_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_002983 PE=4 SV=1
          Length = 591

 Score = 57.0 bits (136), Expect(2) = 1e-13
 Identities = 29/69 (42%), Positives = 42/69 (60%)
 Frame = -1

Query: 496 QSECYCLANNPMFHPRTKHIDVRYHFSRECLENKSLDLMKIPTSENTADALTKSLSNHQF 317
           QS  Y L  N MFH R KHIDV+ HF R+ +    + + KI T++N  D LTK+L+  + 
Sbjct: 521 QSAIY-LTXNTMFHERMKHIDVKLHFLRDVVSKDEVVVEKIHTNDNPXDMLTKALTTIKS 579

Query: 316 QHCHEVMGI 290
           +HC  ++ I
Sbjct: 580 KHCLSLINI 588



 Score = 42.7 bits (99), Expect(2) = 1e-13
 Identities = 21/42 (50%), Positives = 30/42 (71%)
 Frame = -2

Query: 606 RQSMYVALIEACNEAI*LSRLVKDLGLEQCTPILHCDSQSAI 481
           R++ YVALIEA  EA+ +  ++ +L L Q T  +HCD+QSAI
Sbjct: 483 REAKYVALIEAMKEALWVKGMIGELELAQKTLXVHCDNQSAI 524


>tr|A5BET6|A5BET6_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_013728 PE=4 SV=1
          Length = 174

 Score = 62.4 bits (150), Expect(2) = 2e-13
 Identities = 29/63 (46%), Positives = 39/63 (61%)
 Frame = -1

Query: 478 LANNPMFHPRTKHIDVRYHFSRECLENKSLDLMKIPTSENTADALTKSLSNHQFQHCHEV 299
           L+ NP FH R+KHIDVRYH+ R+ LE K   + KI T EN +D +TK +     Q C + 
Sbjct: 107 LSKNPTFHSRSKHIDVRYHWIRDALEIKLFCVEKIHTDENGSDMMTKPIPTENLQVCRKQ 166

Query: 298 MGI 290
            G+
Sbjct: 167 AGL 169



 Score = 36.6 bits (83), Expect(2) = 2e-13
 Identities = 15/38 (39%), Positives = 27/38 (71%)
 Frame = -2

Query: 594 YVALIEACNEAI*LSRLVKDLGLEQCTPILHCDSQSAI 481
           Y+A+ E   E + + + +++LGL+Q   +L+CDSQS+I
Sbjct: 68  YIAITETSKELLWMKKFLQELGLQQEMYLLYCDSQSSI 105


>tr|A5C541|A5C541_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_003855 PE=4 SV=1
          Length = 406

 Score = 62.4 bits (150), Expect(2) = 5e-13
 Identities = 31/63 (49%), Positives = 41/63 (65%)
 Frame = -1

Query: 496 QSECYCLANNPMFHPRTKHIDVRYHFSRECLENKSLDLMKIPTSENTADALTKSLSNHQF 317
           QS  Y L  N ++H RTKHIDVR+H   E + +  L L K+ TSEN AD LTK ++  +F
Sbjct: 341 QSAIY-LEKNQVYHARTKHIDVRFHKISELVSSGELLLKKVHTSENAADMLTKPVTTEKF 399

Query: 316 QHC 308
           +HC
Sbjct: 400 KHC 402



 Score = 35.0 bits (79), Expect(2) = 5e-13
 Identities = 18/41 (43%), Positives = 29/41 (70%)
 Frame = -2

Query: 603 QSMYVALIEACNEAI*LSRLVKDLGLEQCTPILHCDSQSAI 481
           +S Y+A+ E   E++ L+ LVK+LG++Q    L+ D+QSAI
Sbjct: 304 KSEYMAIAETTKESLWLTGLVKELGIQQGGVQLYFDNQSAI 344


>tr|A5BUV3|A5BUV3_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_006090 PE=4 SV=1
          Length = 324

 Score = 60.5 bits (145), Expect(2) = 1e-12
 Identities = 26/63 (41%), Positives = 41/63 (65%)
 Frame = -1

Query: 478 LANNPMFHPRTKHIDVRYHFSRECLENKSLDLMKIPTSENTADALTKSLSNHQFQHCHEV 299
           ++ NP+ H RTKHID+R+HF R+ +E+K + L  +PT    AD LTK L   +F+   + 
Sbjct: 258 ISKNPVLHXRTKHIDIRHHFIRDLVEDKVVSLEYVPTEGQIADILTKPLDVSRFESLRKS 317

Query: 298 MGI 290
           +G+
Sbjct: 318 IGL 320



 Score = 35.4 bits (80), Expect(2) = 1e-12
 Identities = 12/41 (29%), Positives = 29/41 (70%)
 Frame = -2

Query: 603 QSMYVALIEACNEAI*LSRLVKDLGLEQCTPILHCDSQSAI 481
           ++ Y+A+   C++ + + ++++D G++Q T ++ CD+ SAI
Sbjct: 216 EAEYIAIGSCCSQLLWIKQMLRDYGIDQGTMVVFCDNTSAI 256


>tr|Q0JGC1|Q0JGC1_ORYSJ Os01g0931000 protein OS=Oryza sativa subsp.
            japonica GN=Os01g0931000 PE=3 SV=1
          Length = 1561

 Score = 65.9 bits (159), Expect(2) = 4e-12
 Identities = 28/63 (44%), Positives = 40/63 (63%)
 Frame = -1

Query: 478  LANNPMFHPRTKHIDVRYHFSRECLENKSLDLMKIPTSENTADALTKSLSNHQFQHCHEV 299
            L  NP+ H R+KHIDV+YH+ REC E K +++M + T+E   D  TKSL   +FQ     
Sbjct: 1490 LIKNPVHHDRSKHIDVKYHYIRECAEKKLIEMMFVGTAEQLGDIFTKSLGRTRFQELRSK 1549

Query: 298  MGI 290
            +G+
Sbjct: 1550 IGV 1552



 Score = 28.5 bits (62), Expect(2) = 4e-12
 Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
 Frame = -2

Query: 603  QSMYVALIEACNEAI*LSRLVKD-LGLEQCTPILHCDSQSAIA 478
            ++ Y+A   A  + + L+RL+ + LG E  TP+L  D+QS I+
Sbjct: 1447 EAEYIAAAAATCQGVWLARLLAEVLGDEIATPLLKVDNQSTIS 1489


>tr|O81903|O81903_ARATH Putative transposable element OS=Arabidopsis
            thaliana GN=T6K22.90 PE=2 SV=1
          Length = 1308

 Score = 56.2 bits (134), Expect(2) = 4e-12
 Identities = 25/62 (40%), Positives = 40/62 (64%)
 Frame = -1

Query: 481  CLANNPMFHPRTKHIDVRYHFSRECLENKSLDLMKIPTSENTADALTKSLSNHQFQHCHE 302
            CL+ N  FH RTKH++V+++F R+ +E   + + KI TS N AD LTK +   +F+   +
Sbjct: 1243 CLSKNNAFHDRTKHVEVKFYFIRDIIEAGEVKVRKIHTSVNPADMLTKCIPVKKFEEALD 1302

Query: 301  VM 296
            V+
Sbjct: 1303 VL 1304



 Score = 38.1 bits (87), Expect(2) = 4e-12
 Identities = 19/41 (46%), Positives = 28/41 (68%)
 Frame = -2

Query: 603  QSMYVALIEACNEAI*LSRLVKDLGLEQCTPILHCDSQSAI 481
            Q+ ++AL EA  EAI +  L++D+GL+     + CDSQSAI
Sbjct: 1202 QAEFIALTEAVKEAIWIRGLLEDMGLQPKPATVWCDSQSAI 1242