BP911546 |
Clone id |
YMU001_000006_C01 |
Library |
YMU01 |
Length |
451 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000006_C01. |
Accession |
BP911546 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
- |
Sequence |
ACTATCACTGCCACTATCTTGTGACTTCCGATGAGATTTCTTTCTATCTTTCTTCTTTGA CTTCTTTGGATGTTCCATATTCTCTAAAGCCTCTCCTTCTACTACAGCCCTAGCAATTAC AGTATCCAGTGGAGTAGTTACCTTATCCACTATCGCCATAGCCGTTCTGAGATCCTTGTT GAGTCCCCGTAAAAAATAGTCATTCAATACTTTCGCTACCGGTGGAGAGGGGGAATGGGG ACAACACCCGGCACAAACAGAAATGCCACTCTATAGCCCAGGGTCAACGCAACACCCCAA TCCACTCGAAAACACCTTCAAAAGGACAATTTACACCTAATCCGCTTCACCTGCTCAGCT TCCAAGCGTACACGCGCTATCAACGGCCGCAAAATGATCCAACACCTCACTGTACCTGCT CTGTCTTCCTCTGCACATACACTTACTCTCT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P0AAE2 |
Definition |
sp|P0AAE2|PROY_ECOLI Proline-specific permease proY OS=Escherichia coli (strain K12) |
Align length |
64 |
Score (bit) |
32.3 |
E-value |
0.95 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP911546|Adiantum capillus-veneris mRNA, clone: YMU001_000006_C01. (451 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|P0AAE2|PROY_ECOLI Proline-specific permease proY OS=Escherich... 32 0.95 sp|P0AAE3|PROY_ECOL6 Proline-specific permease proY OS=Escherich... 32 0.95 sp|P0AAE4|PROY_ECO57 Proline-specific permease proY OS=Escherich... 32 0.95 sp|Q89H53|ADEC2_BRAJA Adenine deaminase 2 OS=Bradyrhizobium japo... 32 1.3 sp|P26754|RFA2_YEAST Replication factor A protein 2 OS=Saccharom... 32 1.6 sp|Q9Y4K1|AIM1_HUMAN Absent in melanoma 1 protein OS=Homo sapien... 31 2.8 sp|P02686|MBP_HUMAN Myelin basic protein OS=Homo sapiens GN=MBP ... 31 2.8 sp|Q8CJ91|C209B_MOUSE CD209 antigen-like protein B OS=Mus muscul... 30 4.8 sp|Q5YQU1|SECA_NOCFA Protein translocase subunit secA OS=Nocardi... 30 6.3 sp|Q9CC42|UPPP_MYCLE Undecaprenyl-diphosphatase OS=Mycobacterium... 29 8.0 sp|Q8RLV9|AROA_XENNE 3-phosphoshikimate 1-carboxyvinyltransferas... 29 8.0
>sp|P0AAE2|PROY_ECOLI Proline-specific permease proY OS=Escherichia coli (strain K12) GN=proY PE=1 SV=1 Length = 457
Score = 32.3 bits (72), Expect = 0.95 Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 2/64 (3%) Frame = -3
Query: 413 TVRCWI--ILRPLIARVRLEAEQVKRIRCKLSF*RCFRVDWGVALTLGYRVAFLFVPGVV 240 TV WI +L + R RL E+VK ++ F+V GVA T+G + LF+ G++ Sbjct: 368 TVWVWIMILLSQIAFRRRLPPEEVKALK--------FKVPGGVATTIGGLIFLLFIIGLI 419
Query: 239 PIPP 228 P Sbjct: 420 GYHP 423
>sp|P0AAE3|PROY_ECOL6 Proline-specific permease proY OS=Escherichia coli O6 GN=proY PE=3 SV=1 Length = 457
Score = 32.3 bits (72), Expect = 0.95 Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 2/64 (3%) Frame = -3
Query: 413 TVRCWI--ILRPLIARVRLEAEQVKRIRCKLSF*RCFRVDWGVALTLGYRVAFLFVPGVV 240 TV WI +L + R RL E+VK ++ F+V GVA T+G + LF+ G++ Sbjct: 368 TVWVWIMILLSQIAFRRRLPPEEVKALK--------FKVPGGVATTIGGLIFLLFIIGLI 419
Query: 239 PIPP 228 P Sbjct: 420 GYHP 423
>sp|P0AAE4|PROY_ECO57 Proline-specific permease proY OS=Escherichia coli O157:H7 GN=proY PE=3 SV=1 Length = 457
Score = 32.3 bits (72), Expect = 0.95 Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 2/64 (3%) Frame = -3
Query: 413 TVRCWI--ILRPLIARVRLEAEQVKRIRCKLSF*RCFRVDWGVALTLGYRVAFLFVPGVV 240 TV WI +L + R RL E+VK ++ F+V GVA T+G + LF+ G++ Sbjct: 368 TVWVWIMILLSQIAFRRRLPPEEVKALK--------FKVPGGVATTIGGLIFLLFIIGLI 419
Query: 239 PIPP 228 P Sbjct: 420 GYHP 423
>sp|Q89H53|ADEC2_BRAJA Adenine deaminase 2 OS=Bradyrhizobium japonicum GN=ade2 PE=3 SV=1 Length = 625
Score = 32.0 bits (71), Expect = 1.3 Identities = 24/83 (28%), Positives = 35/83 (42%), Gaps = 13/83 (15%) Frame = +1
Query: 193 KIVIQYFRYRWRGGMGTTPGTNRNATL*PRVNATP--QSTRKHLQKDNL----------- 333 +IVI+ R W G G+ PG R P V A P KH++ +L Sbjct: 58 EIVIKGRRIAWVGPAGSYPGEVRERVHRPDVAAVPGFGEVHKHIESSHLTPEWEAALVLP 117
Query: 334 HLIRFTCSASKRTRAINGRKMIQ 402 H +TC AS +NG + ++ Sbjct: 118 HGNTWTCEASHEFSNVNGARNLE 140
>sp|P26754|RFA2_YEAST Replication factor A protein 2 OS=Saccharomyces cerevisiae GN=RFA2 PE=1 SV=1 Length = 273
Score = 31.6 bits (70), Expect = 1.6 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 2/48 (4%) Frame = +3
Query: 192 KNSHSILSLPVERGNGDNTRHKQ--KCHSIAQGQRNTPIHSKTPSKGQ 329 KN + P++ N T H + KCHSIA G P+ S + + GQ Sbjct: 147 KNIQYAVIKPIDSFNEVLTHHLEVIKCHSIASGMMKQPLESASNNNGQ 194
>sp|Q9Y4K1|AIM1_HUMAN Absent in melanoma 1 protein OS=Homo sapiens GN=AIM1 PE=1 SV=3 Length = 1723
Score = 30.8 bits (68), Expect = 2.8 Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 8/48 (16%) Frame = +3
Query: 195 NSHSILSLPVERGNG-------DNTR-HKQKCHSIAQGQRNTPIHSKT 314 N H+ S PV +GN +N R + H+ +GQRNTP SKT Sbjct: 255 NEHNPFSQPVHKGNTATKISLFENKRTNSSPRHTDIRGQRNTPASSKT 302
>sp|P02686|MBP_HUMAN Myelin basic protein OS=Homo sapiens GN=MBP PE=1 SV=3 Length = 304
Score = 30.8 bits (68), Expect = 2.8 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 4/49 (8%) Frame = +2
Query: 224 GEGEWGQHPAQT----EMPLYSPGSTQHPNPLENTFKRTIYT*SASPAQ 358 G G+ HPA+T +P S G TQ NP+ + FK + + P+Q Sbjct: 189 GSGKDSHHPARTAHYGSLPQKSHGRTQDENPVVHFFKNIVTPRTPPPSQ 237
>sp|Q8CJ91|C209B_MOUSE CD209 antigen-like protein B OS=Mus musculus GN=Cd209b PE=1 SV=2 Length = 325
Score = 30.0 bits (66), Expect = 4.8 Identities = 15/30 (50%), Positives = 18/30 (60%) Frame = -2
Query: 270 SGISVCAGCCPHSPSPPVAKVLNDYFLRGL 181 SGI AGC HS P V ++L+ FL GL Sbjct: 38 SGIKCLAGCSGHSQVPLVLQLLSFLFLAGL 67
>sp|Q5YQU1|SECA_NOCFA Protein translocase subunit secA OS=Nocardia farcinica GN=secA PE=3 SV=1 Length = 937
Score = 29.6 bits (65), Expect = 6.3 Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 1/41 (2%) Frame = -2
Query: 297 GCCVDPGL*SGISVCAGC-CPHSPSPPVAKVLNDYFLRGLN 178 G VDPGL S + P +P+P +AK + D RGLN Sbjct: 844 GVSVDPGLRSPVGATVPAPAPAAPTPLLAKGITDQAPRGLN 884
>sp|Q9CC42|UPPP_MYCLE Undecaprenyl-diphosphatase OS=Mycobacterium leprae GN=uppP PE=3 SV=1 Length = 282
Score = 29.3 bits (64), Expect = 8.0 Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 3/69 (4%) Frame = -3
Query: 440 VCAEEDRAGTVRCWIILRPLIA--RVRLEAEQVKRIRCKLSF*RCF-RVDWGVALTLGYR 270 VC +E R+G W++ L+A V AE V R RC +++W AL +G Sbjct: 109 VCKDEIRSGIRPLWVVATALVAFSGVIAFAEYVGRQN------RCIEQLNWRDALVVGVA 162
Query: 269 VAFLFVPGV 243 +PGV Sbjct: 163 QTLALIPGV 171
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A8XKN7 |
Definition |
tr|A8XKN7|A8XKN7_CAEBR Putative uncharacterized protein OS=Caenorhabditis briggsae |
Align length |
59 |
Score (bit) |
33.9 |
E-value |
4.2 |
Report |
|