BP911546
Clone id YMU001_000006_C01
Library
Length 451
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000006_C01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
ACTATCACTGCCACTATCTTGTGACTTCCGATGAGATTTCTTTCTATCTTTCTTCTTTGA
CTTCTTTGGATGTTCCATATTCTCTAAAGCCTCTCCTTCTACTACAGCCCTAGCAATTAC
AGTATCCAGTGGAGTAGTTACCTTATCCACTATCGCCATAGCCGTTCTGAGATCCTTGTT
GAGTCCCCGTAAAAAATAGTCATTCAATACTTTCGCTACCGGTGGAGAGGGGGAATGGGG
ACAACACCCGGCACAAACAGAAATGCCACTCTATAGCCCAGGGTCAACGCAACACCCCAA
TCCACTCGAAAACACCTTCAAAAGGACAATTTACACCTAATCCGCTTCACCTGCTCAGCT
TCCAAGCGTACACGCGCTATCAACGGCCGCAAAATGATCCAACACCTCACTGTACCTGCT
CTGTCTTCCTCTGCACATACACTTACTCTCT
■■Homology search results ■■ -
sp_hit_id P0AAE2
Definition sp|P0AAE2|PROY_ECOLI Proline-specific permease proY OS=Escherichia coli (strain K12)
Align length 64
Score (bit) 32.3
E-value 0.95
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP911546|Adiantum capillus-veneris mRNA, clone:
YMU001_000006_C01.
(451 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P0AAE2|PROY_ECOLI Proline-specific permease proY OS=Escherich... 32 0.95
sp|P0AAE3|PROY_ECOL6 Proline-specific permease proY OS=Escherich... 32 0.95
sp|P0AAE4|PROY_ECO57 Proline-specific permease proY OS=Escherich... 32 0.95
sp|Q89H53|ADEC2_BRAJA Adenine deaminase 2 OS=Bradyrhizobium japo... 32 1.3
sp|P26754|RFA2_YEAST Replication factor A protein 2 OS=Saccharom... 32 1.6
sp|Q9Y4K1|AIM1_HUMAN Absent in melanoma 1 protein OS=Homo sapien... 31 2.8
sp|P02686|MBP_HUMAN Myelin basic protein OS=Homo sapiens GN=MBP ... 31 2.8
sp|Q8CJ91|C209B_MOUSE CD209 antigen-like protein B OS=Mus muscul... 30 4.8
sp|Q5YQU1|SECA_NOCFA Protein translocase subunit secA OS=Nocardi... 30 6.3
sp|Q9CC42|UPPP_MYCLE Undecaprenyl-diphosphatase OS=Mycobacterium... 29 8.0
sp|Q8RLV9|AROA_XENNE 3-phosphoshikimate 1-carboxyvinyltransferas... 29 8.0

>sp|P0AAE2|PROY_ECOLI Proline-specific permease proY OS=Escherichia
coli (strain K12) GN=proY PE=1 SV=1
Length = 457

Score = 32.3 bits (72), Expect = 0.95
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Frame = -3

Query: 413 TVRCWI--ILRPLIARVRLEAEQVKRIRCKLSF*RCFRVDWGVALTLGYRVAFLFVPGVV 240
TV WI +L + R RL E+VK ++ F+V GVA T+G + LF+ G++
Sbjct: 368 TVWVWIMILLSQIAFRRRLPPEEVKALK--------FKVPGGVATTIGGLIFLLFIIGLI 419

Query: 239 PIPP 228
P
Sbjct: 420 GYHP 423


>sp|P0AAE3|PROY_ECOL6 Proline-specific permease proY OS=Escherichia
coli O6 GN=proY PE=3 SV=1
Length = 457

Score = 32.3 bits (72), Expect = 0.95
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Frame = -3

Query: 413 TVRCWI--ILRPLIARVRLEAEQVKRIRCKLSF*RCFRVDWGVALTLGYRVAFLFVPGVV 240
TV WI +L + R RL E+VK ++ F+V GVA T+G + LF+ G++
Sbjct: 368 TVWVWIMILLSQIAFRRRLPPEEVKALK--------FKVPGGVATTIGGLIFLLFIIGLI 419

Query: 239 PIPP 228
P
Sbjct: 420 GYHP 423


>sp|P0AAE4|PROY_ECO57 Proline-specific permease proY OS=Escherichia
coli O157:H7 GN=proY PE=3 SV=1
Length = 457

Score = 32.3 bits (72), Expect = 0.95
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Frame = -3

Query: 413 TVRCWI--ILRPLIARVRLEAEQVKRIRCKLSF*RCFRVDWGVALTLGYRVAFLFVPGVV 240
TV WI +L + R RL E+VK ++ F+V GVA T+G + LF+ G++
Sbjct: 368 TVWVWIMILLSQIAFRRRLPPEEVKALK--------FKVPGGVATTIGGLIFLLFIIGLI 419

Query: 239 PIPP 228
P
Sbjct: 420 GYHP 423


>sp|Q89H53|ADEC2_BRAJA Adenine deaminase 2 OS=Bradyrhizobium
japonicum GN=ade2 PE=3 SV=1
Length = 625

Score = 32.0 bits (71), Expect = 1.3
Identities = 24/83 (28%), Positives = 35/83 (42%), Gaps = 13/83 (15%)
Frame = +1

Query: 193 KIVIQYFRYRWRGGMGTTPGTNRNATL*PRVNATP--QSTRKHLQKDNL----------- 333
+IVI+ R W G G+ PG R P V A P KH++ +L
Sbjct: 58 EIVIKGRRIAWVGPAGSYPGEVRERVHRPDVAAVPGFGEVHKHIESSHLTPEWEAALVLP 117

Query: 334 HLIRFTCSASKRTRAINGRKMIQ 402
H +TC AS +NG + ++
Sbjct: 118 HGNTWTCEASHEFSNVNGARNLE 140


>sp|P26754|RFA2_YEAST Replication factor A protein 2
OS=Saccharomyces cerevisiae GN=RFA2 PE=1 SV=1
Length = 273

Score = 31.6 bits (70), Expect = 1.6
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = +3

Query: 192 KNSHSILSLPVERGNGDNTRHKQ--KCHSIAQGQRNTPIHSKTPSKGQ 329
KN + P++ N T H + KCHSIA G P+ S + + GQ
Sbjct: 147 KNIQYAVIKPIDSFNEVLTHHLEVIKCHSIASGMMKQPLESASNNNGQ 194


>sp|Q9Y4K1|AIM1_HUMAN Absent in melanoma 1 protein OS=Homo sapiens
GN=AIM1 PE=1 SV=3
Length = 1723

Score = 30.8 bits (68), Expect = 2.8
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 8/48 (16%)
Frame = +3

Query: 195 NSHSILSLPVERGNG-------DNTR-HKQKCHSIAQGQRNTPIHSKT 314
N H+ S PV +GN +N R + H+ +GQRNTP SKT
Sbjct: 255 NEHNPFSQPVHKGNTATKISLFENKRTNSSPRHTDIRGQRNTPASSKT 302


>sp|P02686|MBP_HUMAN Myelin basic protein OS=Homo sapiens GN=MBP
PE=1 SV=3
Length = 304

Score = 30.8 bits (68), Expect = 2.8
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Frame = +2

Query: 224 GEGEWGQHPAQT----EMPLYSPGSTQHPNPLENTFKRTIYT*SASPAQ 358
G G+ HPA+T +P S G TQ NP+ + FK + + P+Q
Sbjct: 189 GSGKDSHHPARTAHYGSLPQKSHGRTQDENPVVHFFKNIVTPRTPPPSQ 237


>sp|Q8CJ91|C209B_MOUSE CD209 antigen-like protein B OS=Mus musculus
GN=Cd209b PE=1 SV=2
Length = 325

Score = 30.0 bits (66), Expect = 4.8
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = -2

Query: 270 SGISVCAGCCPHSPSPPVAKVLNDYFLRGL 181
SGI AGC HS P V ++L+ FL GL
Sbjct: 38 SGIKCLAGCSGHSQVPLVLQLLSFLFLAGL 67


>sp|Q5YQU1|SECA_NOCFA Protein translocase subunit secA OS=Nocardia
farcinica GN=secA PE=3 SV=1
Length = 937

Score = 29.6 bits (65), Expect = 6.3
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = -2

Query: 297 GCCVDPGL*SGISVCAGC-CPHSPSPPVAKVLNDYFLRGLN 178
G VDPGL S + P +P+P +AK + D RGLN
Sbjct: 844 GVSVDPGLRSPVGATVPAPAPAAPTPLLAKGITDQAPRGLN 884


>sp|Q9CC42|UPPP_MYCLE Undecaprenyl-diphosphatase OS=Mycobacterium
leprae GN=uppP PE=3 SV=1
Length = 282

Score = 29.3 bits (64), Expect = 8.0
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Frame = -3

Query: 440 VCAEEDRAGTVRCWIILRPLIA--RVRLEAEQVKRIRCKLSF*RCF-RVDWGVALTLGYR 270
VC +E R+G W++ L+A V AE V R RC +++W AL +G
Sbjct: 109 VCKDEIRSGIRPLWVVATALVAFSGVIAFAEYVGRQN------RCIEQLNWRDALVVGVA 162

Query: 269 VAFLFVPGV 243
+PGV
Sbjct: 163 QTLALIPGV 171


tr_hit_id A8XKN7
Definition tr|A8XKN7|A8XKN7_CAEBR Putative uncharacterized protein OS=Caenorhabditis briggsae
Align length 59
Score (bit) 33.9
E-value 4.2
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP911546|Adiantum capillus-veneris mRNA, clone:
YMU001_000006_C01.
(451 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A8XKN7|A8XKN7_CAEBR Putative uncharacterized protein OS=Caeno... 34 4.2
tr|A1Z9H0|A1Z9H0_DROME CG6280 OS=Drosophila melanogaster GN=CG62... 33 5.5
tr|B3MUS8|B3MUS8_DROAN GF22712 OS=Drosophila ananassae GN=GF2271... 33 9.3
tr|B0NTL6|B0NTL6_BACSE Putative uncharacterized protein OS=Bacte... 33 9.4

>tr|A8XKN7|A8XKN7_CAEBR Putative uncharacterized protein
OS=Caenorhabditis briggsae GN=CBG14785 PE=4 SV=2
Length = 1381

Score = 33.9 bits (76), Expect = 4.2
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
Frame = +3

Query: 240 DNTRHK-----QKCHSIAQGQRNTPIHSKTPSKGQFTPNPLHLLSFQAYTRYQRPQNDP 401
+N R K QK H + R HS+ P + ++ +P H +Q + RYQR DP
Sbjct: 1244 ENARQKELARLQKLHPRGEHSRYHHGHSRHPDQHRYQEHPRHHDRYQEHPRYQRHPEDP 1302


>tr|A1Z9H0|A1Z9H0_DROME CG6280 OS=Drosophila melanogaster GN=CG6280
PE=4 SV=1
Length = 1093

Score = 33.5 bits (75), Expect = 5.5
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 2/88 (2%)
Frame = +3

Query: 183 VPVKNSHSILSLPVERGNGDNTRHKQKCHSIAQGQRNTP--IHSKTPSKGQFTPNPLHLL 356
VPV N + I S ++G G + + H + G + P +KTP + Q P L
Sbjct: 363 VPVPNFNGIESYANQKGPGQD--QEINVHIVHDGPQGKPQQAEAKTPKESQSQPAQQALD 420

Query: 357 SFQAYTRYQRPQNDPTPHCTCSVFLCTY 440
FQA++ + Q+ P+ FL ++
Sbjct: 421 HFQAHSEQRFQQHHPSQEAPSRQFLKSF 448


>tr|B3MUS8|B3MUS8_DROAN GF22712 OS=Drosophila ananassae GN=GF22712
PE=4 SV=1
Length = 2037

Score = 32.7 bits (73), Expect = 9.3
Identities = 23/70 (32%), Positives = 32/70 (45%)
Frame = +2

Query: 200 SFNTFATGGEGEWGQHPAQTEMPLYSPGSTQHPNPLENTFKRTIYT*SASPAQLPSVHAL 379
SF+ +GG G W + + +P ST P P + F + A+P QL S A
Sbjct: 871 SFDMDPSGGVGAWTDSRPNSRASVATPVSTPRP-PSGHGFSPVVCASPATPYQLSSHSAA 929

Query: 380 STAAK*SNTS 409
S A+ SN S
Sbjct: 930 SLASPQSNAS 939


>tr|B0NTL6|B0NTL6_BACSE Putative uncharacterized protein
OS=Bacteroides stercoris ATCC 43183 GN=BACSTE_02845 PE=4
SV=1
Length = 223

Score = 32.7 bits (73), Expect = 9.4
Identities = 31/106 (29%), Positives = 43/106 (40%), Gaps = 18/106 (16%)
Frame = +3

Query: 183 VPVKNSHSILSLPVERGNGDNTRHKQKCHSIAQGQRN------TPIHSKTPSKGQFTPNP 344
V ++ H++ + + + DNT KQ +G +N P SK G P P
Sbjct: 49 VKLRFHHTLTRIAIYVKSDDNTTGKQITAFSIRGMKNGILTCHIPEDSKDKGFGWSYPAP 108

Query: 345 LHLLSFQAY-TRYQRPQNDPTP-----------HCTCSVFLCTYTY 446
+F A TR+ P N TP + T SVF TYTY
Sbjct: 109 AETETFTATATRFDIPDNTATPKELLATFYLLPYGTESVFNLTYTY 154