BP911551
Clone id YMU001_000006_C08
Library
Length 397
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000006_C08.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
ACTGCAAGTTTGTTAGACACAGCCCGAACAGTAGATTTGAGTACTTGCTCAGATAGTGAC
GATGGAGACTGGCAAAACACAAGCTCCGATAGTGATGATGAATACAGCTCTGCCAGCTTT
GATGATGATGAGTCCTCGGGTGATGAAGGTGAGGGTACCACAGAAATTAACGAAGCAATA
CTGGACTACATGGGGGCTTTGGAGAAAGAAAGAGAAGATGAGGAAAGAGGGGATTCTCTC
ACTGGTGGTGGCGAAGAATCAAGGTCACCAAGAGCTGTCGTAGAGAGTGACTCTTCTGAA
GATGAGGTACCACCACGCAACACAATTGGAAATGTGCCTCTTGAATGGTATAAGGATGAA
AATCACATTGGGTATGATCTGAGTGGAACGAAAATTA
■■Homology search results ■■ -
sp_hit_id Q14137
Definition sp|Q14137|BOP1_HUMAN Ribosome biogenesis protein BOP1 OS=Homo sapiens
Align length 37
Score (bit) 53.1
E-value 4.0e-07
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP911551|Adiantum capillus-veneris mRNA, clone:
YMU001_000006_C08.
(397 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q14137|BOP1_HUMAN Ribosome biogenesis protein BOP1 OS=Homo sa... 53 4e-07
sp|P97452|BOP1_MOUSE Ribosome biogenesis protein BOP1 OS=Mus mus... 50 5e-06
sp|Q04660|ERB1_YEAST Eukaryotic ribosome biogenesis protein 1 OS... 43 4e-04
sp|P25977|UBF1_RAT Nucleolar transcription factor 1 OS=Rattus no... 32 0.75
sp|P25976|UBF1_MOUSE Nucleolar transcription factor 1 OS=Mus mus... 31 1.7
sp|P17480|UBF1_HUMAN Nucleolar transcription factor 1 OS=Homo sa... 31 1.7
sp|Q98943|CASP2_CHICK Caspase-2 OS=Gallus gallus GN=CASP2 PE=2 SV=2 31 1.7
sp|Q6DEU9|CTR9_XENTR RNA polymerase-associated protein CTR9 homo... 31 2.2
sp|Q8WYB5|MYST4_HUMAN Histone acetyltransferase MYST4 OS=Homo sa... 30 2.9
sp|P13940|LEA29_GOSHI Late embryogenesis abundant protein D-29 O... 30 2.9
sp|A4FV57|AEBP2_BOVIN Zinc finger protein AEBP2 OS=Bos taurus GN... 30 2.9
sp|Q99PI5|LPIN2_MOUSE Lipin-2 OS=Mus musculus GN=Lpin2 PE=1 SV=2 30 3.7
sp|P09803|CADH1_MOUSE Epithelial cadherin OS=Mus musculus GN=Cdh... 30 3.7
sp|Q6ZN18|AEBP2_HUMAN Zinc finger protein AEBP2 OS=Homo sapiens ... 30 3.7
sp|Q5VWG9|TAF3_HUMAN Transcription initiation factor TFIID subun... 30 4.9
sp|Q5F489|TAF3_CHICK Transcription initiation factor TFIID subun... 30 4.9
sp|Q92539|LPIN2_HUMAN Lipin-2 OS=Homo sapiens GN=LPIN2 PE=1 SV=1 30 4.9
sp|A1K2Y6|Y574_AZOSB UPF0082 protein azo0574 OS=Azoarcus sp. (st... 29 6.4
sp|Q5EAW9|TAF3_XENLA Transcription initiation factor TFIID subun... 29 6.4
sp|A8X0L9|TBP7_CAEBR TAT-binding homolog 7 OS=Caenorhabditis bri... 29 8.3
sp|Q5HZG4|TAF3_MOUSE Transcription initiation factor TFIID subun... 29 8.3
sp|Q0JGK4|SPS_ORYSJ Probable sucrose-phosphate synthase OS=Oryza... 29 8.3
sp|A2WYE9|SPS_ORYSI Probable sucrose-phosphate synthase OS=Oryza... 29 8.3
sp|Q2QWE9|SGS3_ORYSJ Protein SUPPRESSOR OF GENE SILENCING 3 homo... 29 8.3
sp|Q00960|NMDE2_RAT Glutamate [NMDA] receptor subunit epsilon-2 ... 29 8.3
sp|P48988|CENPB_CRIGR Major centromere autoantigen B OS=Cricetul... 29 8.3

>sp|Q14137|BOP1_HUMAN Ribosome biogenesis protein BOP1 OS=Homo
sapiens GN=BOP1 PE=1 SV=2
Length = 746

Score = 53.1 bits (126), Expect = 4e-07
Identities = 22/37 (59%), Positives = 27/37 (72%)
Frame = +1

Query: 286 SDSSEDEVPPRNTIGNVPLEWYKDENHIGYDLSGTKI 396
++ S DE RNT+GNVPLEWY D H+GYDL G +I
Sbjct: 123 AEDSSDEEDIRNTVGNVPLEWYDDFPHVGYDLDGRRI 159


>sp|P97452|BOP1_MOUSE Ribosome biogenesis protein BOP1 OS=Mus
musculus GN=Bop1 PE=1 SV=1
Length = 732

Score = 49.7 bits (117), Expect = 5e-06
Identities = 25/65 (38%), Positives = 35/65 (53%)
Frame = +1

Query: 202 EKEREDEERGDSLTGGGEESRSPRAVVESDSSEDEVPPRNTIGNVPLEWYKDENHIGYDL 381
E+ E+ + L EE+ + + S DE RNT+GNVPL WY + H+GYDL
Sbjct: 81 EETSEELAQAAPLCSRTEEAGALAQDEYEEDSSDEEDIRNTVGNVPLAWYDEFPHVGYDL 140

Query: 382 SGTKI 396
G +I
Sbjct: 141 DGKRI 145


>sp|Q04660|ERB1_YEAST Eukaryotic ribosome biogenesis protein 1
OS=Saccharomyces cerevisiae GN=ERB1 PE=1 SV=1
Length = 807

Score = 43.1 bits (100), Expect = 4e-04
Identities = 17/36 (47%), Positives = 25/36 (69%)
Frame = +1

Query: 289 DSSEDEVPPRNTIGNVPLEWYKDENHIGYDLSGTKI 396
DS + + +NTIGN+PL Y + HIGYD++G +I
Sbjct: 145 DSDDSDAETQNTIGNIPLSAYDEMPHIGYDINGKRI 180


>sp|P25977|UBF1_RAT Nucleolar transcription factor 1 OS=Rattus
norvegicus GN=Ubtf PE=1 SV=1
Length = 764

Score = 32.3 bits (72), Expect = 0.75
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +1

Query: 202 EKEREDEERGDSLTGGGEESRSPRAVVESDSSEDE 306
E+E ED+E GDS GG+ S S D E+E
Sbjct: 691 EEEEEDDENGDSSEDGGDSSESSSEDESEDGDENE 725


>sp|P25976|UBF1_MOUSE Nucleolar transcription factor 1 OS=Mus
musculus GN=Ubtf PE=1 SV=1
Length = 765

Score = 31.2 bits (69), Expect = 1.7
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +1

Query: 202 EKEREDEERGDSLTGGGEESRSPRAVVESDSSEDE 306
E+E ED+E GDS GG+ S S D E++
Sbjct: 692 EEEEEDDENGDSSEDGGDSSESSSEDESEDGDEND 726


>sp|P17480|UBF1_HUMAN Nucleolar transcription factor 1 OS=Homo
sapiens GN=UBTF PE=1 SV=1
Length = 764

Score = 31.2 bits (69), Expect = 1.7
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +1

Query: 202 EKEREDEERGDSLTGGGEESRSPRAVVESDSSEDE 306
++E ED+E GDS GG+ S S D E+E
Sbjct: 691 DEEEEDDENGDSSEDGGDSSESSSEDESEDGDENE 725


>sp|Q98943|CASP2_CHICK Caspase-2 OS=Gallus gallus GN=CASP2 PE=2 SV=2
Length = 424

Score = 31.2 bits (69), Expect = 1.7
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +1

Query: 259 SRSPRAVVESDSSEDEVPPRNTIGNVPLEWYKDENHIGYDL 381
S+ PR +VE + PP + + E+Y+D H+ Y L
Sbjct: 125 SKRPRLIVEHSLDSGDGPPIPPVKHCTPEFYRDHQHLAYKL 165


>sp|Q6DEU9|CTR9_XENTR RNA polymerase-associated protein CTR9 homolog
OS=Xenopus tropicalis GN=ctr9 PE=2 SV=1
Length = 1172

Score = 30.8 bits (68), Expect = 2.2
Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Frame = +1

Query: 178 ILDYMGALEKEREDEERGDSLTGGGEESRSPRAVVE--SDSSEDEVPPR 318
+L++ G +E +E ++RG GGG S+ E +D S++++ PR
Sbjct: 888 LLNFTGEMETPKEKKQRGGGGGGGGRRSKKNGEFDEFVNDDSDEDLAPR 936


>sp|Q8WYB5|MYST4_HUMAN Histone acetyltransferase MYST4 OS=Homo sapiens
GN=MYST4 PE=1 SV=3
Length = 2073

Score = 30.4 bits (67), Expect = 2.9
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +1

Query: 202 EKEREDEERGDSLTGGGEESRSPRAVVESDSSEDEV 309
E+E E+EE G+ GGG + P + E E+
Sbjct: 1360 EEEEEEEEEGEEEEGGGNVEKDPDGAKSQEKEEPEI 1395


>sp|P13940|LEA29_GOSHI Late embryogenesis abundant protein D-29
OS=Gossypium hirsutum PE=3 SV=1
Length = 302

Score = 30.4 bits (67), Expect = 2.9
Identities = 18/76 (23%), Positives = 36/76 (47%), Gaps = 7/76 (9%)
Frame = +1

Query: 187 YMGALEKEREDEERGDSLTGGGEESRSPRA-------VVESDSSEDEVPPRNTIGNVPLE 345
Y+ A EK R+ +R +T +E + +A +++ + +E +N L+
Sbjct: 202 YIAAKEKVRDMADRTSEMTNEAQERGARKAEEAKEVVAEKAEGAAEETKKKNEERGESLK 261

Query: 346 WYKDENHIGYDLSGTK 393
W K++ GYD + +K
Sbjct: 262 WAKEKAKQGYDAAKSK 277


tr_hit_id Q9SIY9
Definition tr|Q9SIY9|Q9SIY9_ARATH Putative WD-40 repeat protein OS=Arabidopsis thaliana
Align length 81
Score (bit) 83.2
E-value 6.0e-15
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP911551|Adiantum capillus-veneris mRNA, clone:
YMU001_000006_C08.
(397 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q9SIY9|Q9SIY9_ARATH Putative WD-40 repeat protein OS=Arabidop... 83 6e-15
tr|A7R5L6|A7R5L6_VITVI Chromosome undetermined scaffold_1000, wh... 79 1e-13
tr|A9RDQ0|A9RDQ0_PHYPA Predicted protein OS=Physcomitrella paten... 79 1e-13
tr|Q6Z3V6|Q6Z3V6_ORYSJ Putative transducin / WD-40 repeat protei... 78 2e-13
tr|Q0D6V7|Q0D6V7_ORYSJ Os07g0435400 protein OS=Oryza sativa subs... 78 2e-13
tr|B8B5N0|B8B5N0_ORYSI Putative uncharacterized protein OS=Oryza... 78 2e-13
tr|Q5DMX4|Q5DMX4_CUCME WD40 OS=Cucumis melo GN=WD40 PE=4 SV=1 74 5e-12
tr|Q2PEP5|Q2PEP5_TRIPR Putative WD-40 repeat protein (Fragment) ... 72 1e-11
tr|A8ID74|A8ID74_CHLRE Predicted protein (Fragment) OS=Chlamydom... 66 1e-09
tr|Q4QH39|Q4QH39_LEIMA Putative uncharacterized protein OS=Leish... 61 2e-08
tr|A4HUV2|A4HUV2_LEIIN Putative uncharacterized protein OS=Leish... 60 4e-08
tr|Q4RIX9|Q4RIX9_TETNG Chromosome undetermined SCAF15041, whole ... 60 5e-08
tr|A0JMQ0|A0JMQ0_DANRE Block of proliferation 1 OS=Danio rerio G... 59 2e-07
tr|A4IHS2|A4IHS2_XENTR LOC100124887 protein OS=Xenopus tropicali... 57 3e-07
tr|A4H6F7|A4H6F7_LEIBR Putative uncharacterized protein OS=Leish... 57 3e-07
tr|Q7ZXX9|Q7ZXX9_XENLA Bop1-prov protein OS=Xenopus laevis PE=2 ... 57 5e-07
tr|Q7T0W1|Q7T0W1_XENLA MGC68939 protein OS=Xenopus laevis PE=2 SV=1 57 5e-07
tr|Q4DRI3|Q4DRI3_TRYCR Putative uncharacterized protein (Fragmen... 55 2e-06
tr|Q4CPG5|Q4CPG5_TRYCR Putative uncharacterized protein (Fragmen... 55 2e-06
tr|Q384Z1|Q384Z1_9TRYP Putative uncharacterized protein OS=Trypa... 54 3e-06
tr|Q562C2|Q562C2_RAT Block of proliferation 1 OS=Rattus norvegic... 54 4e-06
tr|Q54TD8|Q54TD8_DICDI WD40 repeat-containing protein OS=Dictyos... 54 4e-06
tr|Q9U2A9|Q9U2A9_CAEEL Protein Y48B6A.1, confirmed by transcript... 53 7e-06
tr|Q96Q25|Q96Q25_HUMAN KM-PA-2 protein OS=Homo sapiens GN=KM-PA-... 53 7e-06
tr|B4DEN9|B4DEN9_HUMAN cDNA FLJ56617, highly similar to Ribosome... 53 7e-06
tr|B2RDN4|B2RDN4_HUMAN cDNA, FLJ96693, highly similar to Homo sa... 53 7e-06
tr|A8K3R2|A8K3R2_HUMAN cDNA FLJ78061, highly similar to Homo sap... 53 7e-06
tr|Q4P2E9|Q4P2E9_USTMA Putative uncharacterized protein OS=Ustil... 53 7e-06
tr|A8XYW9|A8XYW9_CAEBR Putative uncharacterized protein OS=Caeno... 53 9e-06
tr|Q1LXV3|Q1LXV3_DANRE Novel protein similar to vertebrate block... 52 2e-05

>tr|Q9SIY9|Q9SIY9_ARATH Putative WD-40 repeat protein OS=Arabidopsis
thaliana GN=At2g40360 PE=2 SV=1
Length = 775

Score = 83.2 bits (204), Expect = 6e-15
Identities = 40/81 (49%), Positives = 55/81 (67%), Gaps = 5/81 (6%)
Frame = +1

Query: 169 NEAILDYMGALEKEREDEER-----GDSLTGGGEESRSPRAVVESDSSEDEVPPRNTIGN 333
++ +L++ G+++ E +D + G E+S AV ESDSSEDEVP RNT+GN
Sbjct: 101 DDDVLEHDGSIDNEDDDGSEHVGSDNNEEHGSDEDSERGEAVEESDSSEDEVPSRNTVGN 160

Query: 334 VPLEWYKDENHIGYDLSGTKI 396
VPL+WY+DE HIGYDL+G KI
Sbjct: 161 VPLKWYEDEKHIGYDLTGKKI 181


>tr|A7R5L6|A7R5L6_VITVI Chromosome undetermined scaffold_1000, whole
genome shotgun sequence OS=Vitis vinifera
GN=GSVIVT00005276001 PE=4 SV=1
Length = 674

Score = 79.0 bits (193), Expect = 1e-13
Identities = 38/71 (53%), Positives = 48/71 (67%)
Frame = +1

Query: 184 DYMGALEKEREDEERGDSLTGGGEESRSPRAVVESDSSEDEVPPRNTIGNVPLEWYKDEN 363
DY+ A + + + GG ES + + ESDSSEDEV PRNTIG+VPLEWYKDE
Sbjct: 65 DYVSADGDDSLHNDPSEENEGGSSESH--QGIEESDSSEDEVAPRNTIGDVPLEWYKDEE 122

Query: 364 HIGYDLSGTKI 396
H+GYD++G KI
Sbjct: 123 HVGYDIAGKKI 133


>tr|A9RDQ0|A9RDQ0_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_112018 PE=4 SV=1
Length = 626

Score = 78.6 bits (192), Expect = 1e-13
Identities = 39/76 (51%), Positives = 51/76 (67%), Gaps = 5/76 (6%)
Frame = +1

Query: 184 DYMGA-----LEKEREDEERGDSLTGGGEESRSPRAVVESDSSEDEVPPRNTIGNVPLEW 348
DY+G+ +E+ E E++G+ +S +P ESDSSEDEVP RNTIG+VPLEW
Sbjct: 3 DYLGSAGPRDVEEAVEHEDQGNGAGEANGQSGNPTTAEESDSSEDEVPDRNTIGDVPLEW 62

Query: 349 YKDENHIGYDLSGTKI 396
YK+E+HIGY G KI
Sbjct: 63 YKNEDHIGYTKDGLKI 78


>tr|Q6Z3V6|Q6Z3V6_ORYSJ Putative transducin / WD-40 repeat protein
(Putative uncharacterized protein) OS=Oryza sativa
subsp. japonica GN=P0673E01.26 PE=4 SV=1
Length = 648

Score = 78.2 bits (191), Expect = 2e-13
Identities = 41/68 (60%), Positives = 49/68 (72%), Gaps = 7/68 (10%)
Frame = +1

Query: 214 EDEERG-----DSLTGGGEESRSPRA--VVESDSSEDEVPPRNTIGNVPLEWYKDENHIG 372
+D++ G DS G ES P A V ESDSSEDEV PRNTIG+VPLEWYK+E HIG
Sbjct: 26 DDDDEGSLSFEDSGEGSDAESDEPDAPAVEESDSSEDEVAPRNTIGDVPLEWYKNEEHIG 85

Query: 373 YDLSGTKI 396
YD++G+KI
Sbjct: 86 YDITGSKI 93


>tr|Q0D6V7|Q0D6V7_ORYSJ Os07g0435400 protein OS=Oryza sativa subsp.
japonica GN=Os07g0435400 PE=2 SV=1
Length = 678

Score = 78.2 bits (191), Expect = 2e-13
Identities = 41/68 (60%), Positives = 49/68 (72%), Gaps = 7/68 (10%)
Frame = +1

Query: 214 EDEERG-----DSLTGGGEESRSPRA--VVESDSSEDEVPPRNTIGNVPLEWYKDENHIG 372
+D++ G DS G ES P A V ESDSSEDEV PRNTIG+VPLEWYK+E HIG
Sbjct: 26 DDDDEGSLSFEDSGEGSDAESDEPDAPAVEESDSSEDEVAPRNTIGDVPLEWYKNEEHIG 85

Query: 373 YDLSGTKI 396
YD++G+KI
Sbjct: 86 YDITGSKI 93


>tr|B8B5N0|B8B5N0_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_25805 PE=4 SV=1
Length = 678

Score = 78.2 bits (191), Expect = 2e-13
Identities = 37/59 (62%), Positives = 46/59 (77%)
Frame = +1

Query: 220 EERGDSLTGGGEESRSPRAVVESDSSEDEVPPRNTIGNVPLEWYKDENHIGYDLSGTKI 396
E+ G+ +E +P AV ESDSSEDEV PRNTIG+VPLEWYK+E HIGYD++G+KI
Sbjct: 36 EDSGEGSDADSDEPDAP-AVEESDSSEDEVAPRNTIGDVPLEWYKNEEHIGYDITGSKI 93


>tr|Q5DMX4|Q5DMX4_CUCME WD40 OS=Cucumis melo GN=WD40 PE=4 SV=1
Length = 722

Score = 73.6 bits (179), Expect = 5e-12
Identities = 33/58 (56%), Positives = 40/58 (68%)
Frame = +1

Query: 223 ERGDSLTGGGEESRSPRAVVESDSSEDEVPPRNTIGNVPLEWYKDENHIGYDLSGTKI 396
E + G + + ESDSSEDEV PRNT+G+VPLEWY+DE HIGYD+SG KI
Sbjct: 83 ENDEDQENGNDNPIPDQVEEESDSSEDEVAPRNTVGDVPLEWYRDEKHIGYDISGKKI 140


>tr|Q2PEP5|Q2PEP5_TRIPR Putative WD-40 repeat protein (Fragment)
OS=Trifolium pratense PE=2 SV=1
Length = 738

Score = 72.0 bits (175), Expect = 1e-11
Identities = 34/65 (52%), Positives = 44/65 (67%)
Frame = +1

Query: 202 EKEREDEERGDSLTGGGEESRSPRAVVESDSSEDEVPPRNTIGNVPLEWYKDENHIGYDL 381
E + ED+ + + + G + + ESDSSEDEV PRNTIG VPL+WY+DE HIGYD+
Sbjct: 89 ESQDEDDVKSEGGSEGSDIHQEGVGGDESDSSEDEVAPRNTIGEVPLKWYEDEPHIGYDI 148

Query: 382 SGTKI 396
G KI
Sbjct: 149 KGKKI 153


>tr|A8ID74|A8ID74_CHLRE Predicted protein (Fragment)
OS=Chlamydomonas reinhardtii GN=CHLREDRAFT_111274 PE=4
SV=1
Length = 634

Score = 65.9 bits (159), Expect = 1e-09
Identities = 28/37 (75%), Positives = 31/37 (83%)
Frame = +1

Query: 286 SDSSEDEVPPRNTIGNVPLEWYKDENHIGYDLSGTKI 396
SDSSEDE P RNT+GNVPL WYKDE HIGYD+ G +I
Sbjct: 1 SDSSEDERPNRNTVGNVPLVWYKDEEHIGYDIEGARI 37


>tr|Q4QH39|Q4QH39_LEIMA Putative uncharacterized protein
OS=Leishmania major GN=LmjF11.0410 PE=4 SV=1
Length = 808

Score = 61.2 bits (147), Expect = 2e-08
Identities = 32/67 (47%), Positives = 42/67 (62%), Gaps = 8/67 (11%)
Frame = +1

Query: 220 EERGDSLTGGGEESRSPRAVV--------ESDSSEDEVPPRNTIGNVPLEWYKDENHIGY 375
EE ++ G G + + R V ESDSSEDE P N +G++PLEWYKDE+HIGY
Sbjct: 107 EELSNAAAGVGGDDDNGRVVRLGTTQHLDESDSSEDE-PTLNRVGDIPLEWYKDEDHIGY 165

Query: 376 DLSGTKI 396
D+ G K+
Sbjct: 166 DIEGKKL 172