NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP911559
Clone id YMU001_000006_D05
Library
Length 560
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000006_D05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
AAGGGTAGGGTTGCTCTGAGGATGGAGGTGGTGACTGCTGCTTTGAGCATATTATCTAGT
TTTGAGGATGTGTATAAGCTCTGGCTCTTTGTAGCAAGGTTTTTGGATGCTGAATTTGTA
CTGAAGGAGTTGAGTGGCAGCCGTGAGACTGTAATCAAGCTGGGGACATGAAGCCTAGTG
CGACACTGTAAGATCATTCTACACGTCGTAGCACCGGGGTTTGATACCATAGTCTGTGGT
TTGGATGGGGAATTCAACCATCCAAGCCTCAGGCTATACTTTTTTCCTTTTGCAAGGAAA
TACACTAGGTTTTGGGATGTATTCATGTAAGGAAGGATATAGGAATCAATTGCACTGACA
CTTCACATCCCTTGTATGTGGGATTTAGGTATTGCTAACATCATGCAGTTGACTCACGGA
GTATATTGCACCTAAGCATTGCTCCATGTATTTTTTCAAGGAGCTGCTCAGGGGACAAGC
AATATAATCTGTGGCTGCTGCTGCTTTTTCTTGAGCGGAGGCGGTGCATCTTTACAGTGA
GAGGAGCATTTGTGGTGCTT
■■Homology search results ■■ -
sp_hit_id Q12639
Definition sp|Q12639|PLYA_MYCPO Pectin lyase OS=Mycosphaerella pinodes
Align length 61
Score (bit) 34.7
E-value 0.33
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911559|Adiantum capillus-veneris mRNA, clone:
YMU001_000006_D05.
         (560 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q12639|PLYA_MYCPO Pectin lyase OS=Mycosphaerella pinodes GN=P...    35   0.33 
sp|Q9QUH6|SYGP1_RAT Ras GTPase-activating protein SynGAP OS=Ratt...    30   8.1  

>sp|Q12639|PLYA_MYCPO Pectin lyase OS=Mycosphaerella pinodes GN=PELA
           PE=3 SV=1
          Length = 299

 Score = 34.7 bits (78), Expect = 0.33
 Identities = 23/61 (37%), Positives = 32/61 (52%)
 Frame = -1

Query: 206 TCRMILQCRTRLHVPSLITVSRLPLNSFSTNSASKNLATKSQSLYTSSKLDNMLKAAVTT 27
           T    L+CR    +P    V+RLPL  FS+   S+ LAT S+S  TS   D   ++ + T
Sbjct: 43  TAERPLRCRPSASLPPPSRVTRLPL--FSSLVLSRALATTSRSAATSPSSDRTARSCLRT 100

Query: 26  S 24
           S
Sbjct: 101 S 101


>sp|Q9QUH6|SYGP1_RAT Ras GTPase-activating protein SynGAP OS=Rattus
            norvegicus GN=Syngap1 PE=1 SV=2
          Length = 1308

 Score = 30.0 bits (66), Expect = 8.1
 Identities = 31/122 (25%), Positives = 55/122 (45%), Gaps = 2/122 (1%)
 Frame = -1

Query: 404  MMLAIPKSHIQGM*SVSAIDSYILPYMNTSQNLVYFLAKGKKYSLRLGWLNSPSKPQTMV 225
            M+L  P + +QG         Y++  +N+S +L  F+A+G   S+ +  L SP+K +   
Sbjct: 746  MVLRGPSAEMQG---------YMMRDLNSSIDLQSFMARGLNSSMDMARLPSPTKEKPPP 796

Query: 224  SNPGATTCRMILQCRTRLHVPSLITVSRLPL--NSFSTNSASKNLATKSQSLYTSSKLDN 51
              PG                  L  VSR PL  +S +  ++S ++    Q + + +K  +
Sbjct: 797  PPPGGG--------------KDLFYVSRPPLARSSPAYCTSSSDITEPEQKMLSVNKSVS 842

Query: 50   ML 45
            ML
Sbjct: 843  ML 844
tr_hit_id Q9FGL6
Definition tr|Q9FGL6|Q9FGL6_ARATH Genomic DNA, chromosome 5, P1 clone:MJM18 (Putative uncharacterized protein) OS=Arabidopsis thaliana
Align length 37
Score (bit) 58.9
E-value 2.0e-07
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911559|Adiantum capillus-veneris mRNA, clone:
YMU001_000006_D05.
         (560 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q9FGL6|Q9FGL6_ARATH Genomic DNA, chromosome 5, P1 clone:MJM18...    59   2e-07
tr|A7R1T5|A7R1T5_VITVI Chromosome undetermined scaffold_376, who...    58   4e-07
tr|A9U2B6|A9U2B6_PHYPA Predicted protein OS=Physcomitrella paten...    54   4e-06
tr|O80468|O80468_ARATH Putative uncharacterized protein At2g2352...    54   6e-06
tr|A9TR75|A9TR75_PHYPA Predicted protein OS=Physcomitrella paten...    54   6e-06
tr|A9RG94|A9RG94_PHYPA Predicted protein OS=Physcomitrella paten...    54   6e-06
tr|Q2QMU3|Q2QMU3_ORYSJ Os12g0590900 protein OS=Oryza sativa subs...    54   8e-06
tr|A7QKE0|A7QKE0_VITVI Chromosome chr2 scaffold_112, whole genom...    54   8e-06
tr|A3CJ02|A3CJ02_ORYSJ Putative uncharacterized protein OS=Oryza...    54   8e-06
tr|A2ZM89|A2ZM89_ORYSI Putative uncharacterized protein OS=Oryza...    54   8e-06
tr|A7NTN6|A7NTN6_VITVI Chromosome chr18 scaffold_1, whole genome...    53   1e-05
tr|A5BXA6|A5BXA6_VITVI Putative uncharacterized protein OS=Vitis...    53   1e-05
tr|O23176|O23176_ARATH Putative uncharacterized protein C7A10.26...    52   2e-05
tr|A7R4L8|A7R4L8_VITVI Chromosome undetermined scaffold_741, who...    52   3e-05
tr|A7R4E4|A7R4E4_VITVI Chromosome undetermined scaffold_670, who...    52   3e-05
tr|A5AMA2|A5AMA2_VITVI Putative uncharacterized protein OS=Vitis...    52   3e-05
tr|B8A1Q9|B8A1Q9_MAIZE Putative uncharacterized protein OS=Zea m...    51   4e-05
tr|B4FNI7|B4FNI7_MAIZE Putative uncharacterized protein OS=Zea m...    51   4e-05
tr|Q7Y0C6|Q7Y0C6_ORYSJ Os03g0765800 protein OS=Oryza sativa subs...    50   8e-05
tr|Q10EM3|Q10EM3_ORYSJ Expressed protein OS=Oryza sativa subsp. ...    50   8e-05
tr|A3AN05|A3AN05_ORYSJ Putative uncharacterized protein OS=Oryza...    50   8e-05
tr|A2XMB0|A2XMB0_ORYSI Putative uncharacterized protein OS=Oryza...    50   8e-05
tr|O82746|O82746_ARATH Putative uncharacterized protein F7H19.16...    50   1e-04
tr|Q9FGD5|Q9FGD5_ARATH Emb|CAB16785.1 OS=Arabidopsis thaliana GN...    49   2e-04
tr|Q6ZBH4|Q6ZBH4_ORYSJ Os08g0545000 protein OS=Oryza sativa subs...    49   2e-04
tr|B8B9C3|B8B9C3_ORYSI Putative uncharacterized protein OS=Oryza...    49   2e-04
tr|A2YXQ3|A2YXQ3_ORYSI Putative uncharacterized protein OS=Oryza...    49   2e-04
tr|A9REN7|A9REN7_PHYPA Predicted protein OS=Physcomitrella paten...    45   0.002
tr|B4K536|B4K536_DROMO GI23579 OS=Drosophila mojavensis GN=GI235...    36   1.6  
tr|A9SCT3|A9SCT3_PHYPA Predicted protein OS=Physcomitrella paten...    35   3.6  

>tr|Q9FGL6|Q9FGL6_ARATH Genomic DNA, chromosome 5, P1 clone:MJM18
           (Putative uncharacterized protein) OS=Arabidopsis
           thaliana GN=At5g51920 PE=2 SV=1
          Length = 570

 Score = 58.9 bits (141), Expect = 2e-07
 Identities = 27/37 (72%), Positives = 33/37 (89%)
 Frame = +1

Query: 19  RMEVVTAALSILSSFEDVYKLWLFVARFLDAEFVLKE 129
           R+ V+TAAL  L++FEDVYKLW+FVARFLD+EFV KE
Sbjct: 517 RISVLTAALGFLANFEDVYKLWIFVARFLDSEFVDKE 553


>tr|A7R1T5|A7R1T5_VITVI Chromosome undetermined scaffold_376, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00012400001 PE=4 SV=1
          Length = 474

 Score = 57.8 bits (138), Expect = 4e-07
 Identities = 27/43 (62%), Positives = 35/43 (81%)
 Frame = +1

Query: 1   KGRVALRMEVVTAALSILSSFEDVYKLWLFVARFLDAEFVLKE 129
           KG+  L + VVTAAL  L++FED+Y+LW FVA+FLDA+FV KE
Sbjct: 418 KGKDDLGITVVTAALGFLTNFEDIYRLWAFVAQFLDADFVEKE 460


>tr|A9U2B6|A9U2B6_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_154667 PE=4 SV=1
          Length = 577

 Score = 54.3 bits (129), Expect = 4e-06
 Identities = 24/36 (66%), Positives = 31/36 (86%)
 Frame = +1

Query: 22  MEVVTAALSILSSFEDVYKLWLFVARFLDAEFVLKE 129
           + VVTAAL  +S+FEDVY+LW FVA+FLDA+FV +E
Sbjct: 528 ISVVTAALGFVSTFEDVYRLWAFVAKFLDADFVKRE 563


>tr|O80468|O80468_ARATH Putative uncharacterized protein At2g23520
           OS=Arabidopsis thaliana GN=At2g23520 PE=2 SV=1
          Length = 862

 Score = 53.9 bits (128), Expect = 6e-06
 Identities = 29/48 (60%), Positives = 35/48 (72%)
 Frame = +1

Query: 16  LRMEVVTAALSILSSFEDVYKLWLFVARFLDAEFVLKELSGSRETVIK 159
           +R EVVTA+LS LS+FEDVYKLW FVA+FL+  F      GS  TVI+
Sbjct: 810 VRFEVVTASLSFLSNFEDVYKLWAFVAKFLNPGF---SREGSLPTVIE 854


>tr|A9TR75|A9TR75_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_149364 PE=4 SV=1
          Length = 637

 Score = 53.9 bits (128), Expect = 6e-06
 Identities = 25/38 (65%), Positives = 31/38 (81%)
 Frame = +1

Query: 16  LRMEVVTAALSILSSFEDVYKLWLFVARFLDAEFVLKE 129
           L + VVTAAL  +S+FEDVY+LW FVA+FLDA FV +E
Sbjct: 586 LEIPVVTAALGFVSTFEDVYRLWAFVAKFLDAGFVKRE 623


>tr|A9RG94|A9RG94_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_113639 PE=4 SV=1
          Length = 574

 Score = 53.9 bits (128), Expect = 6e-06
 Identities = 24/34 (70%), Positives = 30/34 (88%)
 Frame = +1

Query: 28  VVTAALSILSSFEDVYKLWLFVARFLDAEFVLKE 129
           VVTAAL  +S+FEDVY+LW FVA+FLDA+FV +E
Sbjct: 527 VVTAALGFVSTFEDVYRLWAFVAKFLDADFVKRE 560


>tr|Q2QMU3|Q2QMU3_ORYSJ Os12g0590900 protein OS=Oryza sativa subsp.
           japonica GN=Os12g0590900 PE=2 SV=1
          Length = 908

 Score = 53.5 bits (127), Expect = 8e-06
 Identities = 23/41 (56%), Positives = 32/41 (78%)
 Frame = +1

Query: 7   RVALRMEVVTAALSILSSFEDVYKLWLFVARFLDAEFVLKE 129
           +V +R+EVVTA+L  L++FEDVY +W FVA+FLD  F+  E
Sbjct: 855 KVTIRVEVVTASLGFLTNFEDVYNMWAFVAKFLDPSFLESE 895


>tr|A7QKE0|A7QKE0_VITVI Chromosome chr2 scaffold_112, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00001078001
           PE=4 SV=1
          Length = 652

 Score = 53.5 bits (127), Expect = 8e-06
 Identities = 24/36 (66%), Positives = 31/36 (86%)
 Frame = +1

Query: 22  MEVVTAALSILSSFEDVYKLWLFVARFLDAEFVLKE 129
           + VV+AAL +L++FEDVY LW FV+RFLDA+FV KE
Sbjct: 603 ISVVSAALGLLTNFEDVYNLWAFVSRFLDADFVEKE 638


>tr|A3CJ02|A3CJ02_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_035274 PE=4 SV=1
          Length = 768

 Score = 53.5 bits (127), Expect = 8e-06
 Identities = 23/41 (56%), Positives = 32/41 (78%)
 Frame = +1

Query: 7   RVALRMEVVTAALSILSSFEDVYKLWLFVARFLDAEFVLKE 129
           +V +R+EVVTA+L  L++FEDVY +W FVA+FLD  F+  E
Sbjct: 715 KVTIRVEVVTASLGFLTNFEDVYNMWAFVAKFLDPSFLESE 755


>tr|A2ZM89|A2ZM89_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_38943 PE=4 SV=1
          Length = 830

 Score = 53.5 bits (127), Expect = 8e-06
 Identities = 23/41 (56%), Positives = 32/41 (78%)
 Frame = +1

Query: 7   RVALRMEVVTAALSILSSFEDVYKLWLFVARFLDAEFVLKE 129
           +V +R+EVVTA+L  L++FEDVY +W FVA+FLD  F+  E
Sbjct: 777 KVTIRVEVVTASLGFLTNFEDVYNMWAFVAKFLDPSFLESE 817