BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911565|Adiantum capillus-veneris mRNA, clone:
YMU001_000006_D12.
         (493 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P93317|M630_ARATH Uncharacterized mitochondrial protein AtMg0...    33   0.55 
sp|Q86JF2|LVSB_DICDI BEACH domain-containing protein lvsB OS=Dic...    31   3.5  
sp|Q9T1V6|VG42_BPMU Protein gp42 OS=Enterobacteria phage Mu GN=4...    30   7.8  
sp|Q85C71|RPOC2_ANTFO DNA-directed RNA polymerase subunit beta''...    30   7.8  
sp|Q5RIV7|PTHD1_DANRE Patched domain-containing protein 1 OS=Dan...    30   7.9  

>sp|P93317|M630_ARATH Uncharacterized mitochondrial protein
           AtMg00630 OS=Arabidopsis thaliana GN=AtMg00630 PE=4 SV=1
          Length = 110

 Score = 33.5 bits (75), Expect = 0.55
 Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
 Frame = +2

Query: 47  LYSRSPS-MTVFECLVSKRCLFFFGSTWTKKATVST*RNL*SCRVKDGGEYW*YH 208
           L S+SPS MT+F+ L  + C    G+    +ATV   + + +  +  GG YW +H
Sbjct: 50  LRSQSPSEMTIFQTLCDRCC----GAEVANEATVECGKTMETTNLTSGGRYWPFH 100


>sp|Q86JF2|LVSB_DICDI BEACH domain-containing protein lvsB
            OS=Dictyostelium discoideum GN=lvsB PE=4 SV=1
          Length = 4118

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
 Frame = +3

Query: 198  GSTTMLHSSCVLLLGRHEALQGHINRRFFDICICCL----LY*FLSFINNNIHTF 350
            GS  +L    V+L         H+N R     ICCL    L+  +SF N+NIH+F
Sbjct: 2600 GSAALLRDILVVL---------HLNTRMDYDYICCLQRRVLFDVISFFNDNIHSF 2645


>sp|Q9T1V6|VG42_BPMU Protein gp42 OS=Enterobacteria phage Mu GN=42
           PE=4 SV=1
          Length = 690

 Score = 29.6 bits (65), Expect = 7.8
 Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
 Frame = -3

Query: 83  IQKPSWKEISN--KGRGQMWRWLRSRHR 6
           + KPSW+  S   K   +MWRW+R+R R
Sbjct: 368 VAKPSWQVASYPFKTGRRMWRWMRNRKR 395


>sp|Q85C71|RPOC2_ANTFO DNA-directed RNA polymerase subunit beta''
           OS=Anthoceros formosae GN=rpoC2 PE=2 SV=1
          Length = 1445

 Score = 29.6 bits (65), Expect = 7.8
 Identities = 13/32 (40%), Positives = 22/32 (68%)
 Frame = -3

Query: 116 QKRRDIAWRQDIQKPSWKEISNKGRGQMWRWL 21
           ++RR+I+ + DI  P  +EISNK + + W +L
Sbjct: 729 EERRNISKQNDILVPPGEEISNKFQSENWLYL 760


>sp|Q5RIV7|PTHD1_DANRE Patched domain-containing protein 1 OS=Danio
            rerio GN=ptchd1 PE=3 SV=1
          Length = 897

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 13/78 (16%)
 Frame = -2

Query: 195  YSPPSLTLQLYKLR-----------YVLTVAFFVHVEPKKKRHRLETRHSKTVMEGDLE- 52
            + P +LT  L+K             +V+   F     P KKRH+ + R  +   E + E 
Sbjct: 816  FVPSNLTYTLFKCSLLTAGCTVLHCFVILPVFLTFFPPSKKRHKKKKRAKRKERERERER 875

Query: 51   *REGPNVEMAE-KSSPDH 1
             RE   +E  E + +PDH
Sbjct: 876  EREREEIECIEVRENPDH 893

BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911565|Adiantum capillus-veneris mRNA, clone:
YMU001_000006_D12.
         (493 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q7UMR6|Q7UMR6_RHOBA Putative uncharacterized protein OS=Rhodo...    35   2.4  

>tr|Q7UMR6|Q7UMR6_RHOBA Putative uncharacterized protein
           OS=Rhodopirellula baltica GN=RB8641 PE=4 SV=1
          Length = 92

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = -3

Query: 161 NCVMYLLLPFL-SM*SQKRRDIAWRQDIQKPSWKEISNKGRGQMWRWLRSRH 9
           NCV   +LP   S+ S++ RD AW+ D +   W E+SN+ R     ++ S H
Sbjct: 35  NCVDVHILPQAKSVTSRETRDRAWKTDTRPFPWPELSNRNRAGADEFVSSTH 86