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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP911572
Clone id YMU001_000006_E08
Library
Length 536
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000006_E08.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GTGGAGATCCAACTGTGTTGTACATGCCTTAAATGGCTGGAACTTGCAAAATTACATAAA
CACCTTGTGGCTGTGCCATGCAGCCAGTGAATGTCTGTGTGCCATATACTCATTGCACAG
AACAACGAAAAGCAAGCCAAGAAGCTTACATACAAAAGAAATGACAAATAGGATGGTTGT
ATACAGGAAATTAATGCAACACATTGTCGAACTCTCATAGGTACCTGAAGATGGGGACAG
GCTGCACTGCTTGATAATCCCACACTCCACAACCTGTCGGTAGAGGACAAAACATTCATA
CTCTCATCCGTGAGCATCTGACATCCACTGTTAGATTCTGAGATGATCCAACAATCTAAA
TCCTCACCATTCACTTCAAGCCTTCCAAGCTGATAGCTTATTATACATGCCCTTGTACAA
CCGCCGCGAGCACGCACAGACACTCCGGTTCACCACATTAGTTGATCGGCTATTATGTCC
TCTCCAGCACAAAAATATTGCCCTTGTCATCCCTCCCCACTCGCATCTCATCATCA
■■Homology search results ■■ -
sp_hit_id Q5M755
Definition sp|Q5M755|PAP7_ARATH Probable plastid-lipid-associated protein 7, chloroplastic OS=Arabidopsis thaliana
Align length 19
Score (bit) 34.3
E-value 0.39
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911572|Adiantum capillus-veneris mRNA, clone:
YMU001_000006_E08.
         (536 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q5M755|PAP7_ARATH Probable plastid-lipid-associated protein 7...    34   0.39 
sp|O57428|HASS_XENLA Hyaluronan synthase-related protein OS=Xeno...    33   0.87 
sp|Q66C70|URK_YERPS Uridine kinase OS=Yersinia pseudotuberculosi...    32   1.9  
sp|A4TKM7|URK_YERPP Uridine kinase OS=Yersinia pestis (strain Pe...    32   1.9  
sp|Q1CGU6|URK_YERPN Uridine kinase OS=Yersinia pestis bv. Antiqu...    32   1.9  
sp|Q8ZFZ9|URK_YERPE Uridine kinase OS=Yersinia pestis GN=udk PE=...    32   1.9  
sp|Q1C9T6|URK_YERPA Uridine kinase OS=Yersinia pestis bv. Antiqu...    32   1.9  
sp|A7FJJ4|URK_YERP3 Uridine kinase OS=Yersinia pseudotuberculosi...    32   1.9  
sp|A1JTX4|URK_YERE8 Uridine kinase OS=Yersinia enterocolitica se...    31   3.3  
sp|Q7XC54|HOX1_ORYSJ Homeobox-leucine zipper protein HOX1 OS=Ory...    31   3.3  
sp|Q40691|HOX1_ORYSI Homeobox-leucine zipper protein HOX1 OS=Ory...    31   3.3  
sp|P47101|YJ00_YEAST UPF0508 protein YJR030C/YJR025C-A OS=Saccha...    30   7.4  
sp|A6ZPZ1|YJ00_YEAS7 UPF0508 protein SCY_2952 OS=Saccharomyces c...    30   7.4  
sp|Q5E965|C56D2_BOVIN Cytochrome b561 domain-containing protein ...    30   7.4  
sp|P48897|NU1M_ALBCO NADH-ubiquinone oxidoreductase chain 1 OS=A...    30   9.7  
sp|Q084X6|META_SHEFN Homoserine O-succinyltransferase OS=Shewane...    30   9.7  

>sp|Q5M755|PAP7_ARATH Probable plastid-lipid-associated protein 7,
           chloroplastic OS=Arabidopsis thaliana GN=PAP7 PE=2 SV=1
          Length = 273

 Score = 34.3 bits (77), Expect = 0.39
 Identities = 13/19 (68%), Positives = 18/19 (94%)
 Frame = -2

Query: 535 DDEMRVGRDDKGNIFVLER 479
           D++++VGRD KGN+FVLER
Sbjct: 251 DEDLQVGRDGKGNVFVLER 269


>sp|O57428|HASS_XENLA Hyaluronan synthase-related protein OS=Xenopus
           laevis GN=hasrs PE=2 SV=1
          Length = 583

 Score = 33.1 bits (74), Expect = 0.87
 Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
 Frame = -3

Query: 222 TYESSTMCCINFLYTTILFVISFVCKLLGLLFVVLCNEYMAHRHSL-AAWHSHKVFM 55
           TYES+T     F  T +L  + +   L  ++++ LC + M+   SL A+W S K+ M
Sbjct: 397 TYESATGIFFPFFVTAVLIRLMYSSSLCNIVWLFLCIQIMSLLVSLYASWQSKKLSM 453


>sp|Q66C70|URK_YERPS Uridine kinase OS=Yersinia pseudotuberculosis
           GN=udk PE=3 SV=1
          Length = 213

 Score = 32.0 bits (71), Expect = 1.9
 Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 5/92 (5%)
 Frame = +2

Query: 179 VYRKLMQHIVE--LS*VPEDG---DRLHCLIIPHSTTCR*RTKHSYSHP*ASDIHC*ILR 343
           +YR+L + + +  +  +PEDG   D+ H        +   R K +Y HP A D       
Sbjct: 28  LYRELREQVGDQHIGVIPEDGYYKDQSHL-------SMEERVKTNYDHPSAMD------- 73

Query: 344 *SNNLNPHHSLQAFQADSLLYMPLYNRREHAQ 439
             +NL   H LQA +A   + +PLY+  EH +
Sbjct: 74  --HNLLLEH-LQALKAGKPVELPLYSYTEHTR 102


>sp|A4TKM7|URK_YERPP Uridine kinase OS=Yersinia pestis (strain
           Pestoides F) GN=udk PE=3 SV=1
          Length = 213

 Score = 32.0 bits (71), Expect = 1.9
 Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 5/92 (5%)
 Frame = +2

Query: 179 VYRKLMQHIVE--LS*VPEDG---DRLHCLIIPHSTTCR*RTKHSYSHP*ASDIHC*ILR 343
           +YR+L + + +  +  +PEDG   D+ H        +   R K +Y HP A D       
Sbjct: 28  LYRELREQVGDQHIGVIPEDGYYKDQSHL-------SMEERVKTNYDHPSAMD------- 73

Query: 344 *SNNLNPHHSLQAFQADSLLYMPLYNRREHAQ 439
             +NL   H LQA +A   + +PLY+  EH +
Sbjct: 74  --HNLLLEH-LQALKAGKPVELPLYSYTEHTR 102


>sp|Q1CGU6|URK_YERPN Uridine kinase OS=Yersinia pestis bv. Antiqua
           (strain Nepal516) GN=udk PE=3 SV=1
          Length = 213

 Score = 32.0 bits (71), Expect = 1.9
 Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 5/92 (5%)
 Frame = +2

Query: 179 VYRKLMQHIVE--LS*VPEDG---DRLHCLIIPHSTTCR*RTKHSYSHP*ASDIHC*ILR 343
           +YR+L + + +  +  +PEDG   D+ H        +   R K +Y HP A D       
Sbjct: 28  LYRELREQVGDQHIGVIPEDGYYKDQSHL-------SMEERVKTNYDHPSAMD------- 73

Query: 344 *SNNLNPHHSLQAFQADSLLYMPLYNRREHAQ 439
             +NL   H LQA +A   + +PLY+  EH +
Sbjct: 74  --HNLLLEH-LQALKAGKPVELPLYSYTEHTR 102


>sp|Q8ZFZ9|URK_YERPE Uridine kinase OS=Yersinia pestis GN=udk PE=3
           SV=1
          Length = 213

 Score = 32.0 bits (71), Expect = 1.9
 Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 5/92 (5%)
 Frame = +2

Query: 179 VYRKLMQHIVE--LS*VPEDG---DRLHCLIIPHSTTCR*RTKHSYSHP*ASDIHC*ILR 343
           +YR+L + + +  +  +PEDG   D+ H        +   R K +Y HP A D       
Sbjct: 28  LYRELREQVGDQHIGVIPEDGYYKDQSHL-------SMEERVKTNYDHPSAMD------- 73

Query: 344 *SNNLNPHHSLQAFQADSLLYMPLYNRREHAQ 439
             +NL   H LQA +A   + +PLY+  EH +
Sbjct: 74  --HNLLLEH-LQALKAGKPVELPLYSYTEHTR 102


>sp|Q1C9T6|URK_YERPA Uridine kinase OS=Yersinia pestis bv. Antiqua
           (strain Antiqua) GN=udk PE=3 SV=1
          Length = 213

 Score = 32.0 bits (71), Expect = 1.9
 Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 5/92 (5%)
 Frame = +2

Query: 179 VYRKLMQHIVE--LS*VPEDG---DRLHCLIIPHSTTCR*RTKHSYSHP*ASDIHC*ILR 343
           +YR+L + + +  +  +PEDG   D+ H        +   R K +Y HP A D       
Sbjct: 28  LYRELREQVGDQHIGVIPEDGYYKDQSHL-------SMEERVKTNYDHPSAMD------- 73

Query: 344 *SNNLNPHHSLQAFQADSLLYMPLYNRREHAQ 439
             +NL   H LQA +A   + +PLY+  EH +
Sbjct: 74  --HNLLLEH-LQALKAGKPVELPLYSYTEHTR 102


>sp|A7FJJ4|URK_YERP3 Uridine kinase OS=Yersinia pseudotuberculosis
           serotype O:1b (strain IP 31758) GN=udk PE=3 SV=1
          Length = 213

 Score = 32.0 bits (71), Expect = 1.9
 Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 5/92 (5%)
 Frame = +2

Query: 179 VYRKLMQHIVE--LS*VPEDG---DRLHCLIIPHSTTCR*RTKHSYSHP*ASDIHC*ILR 343
           +YR+L + + +  +  +PEDG   D+ H        +   R K +Y HP A D       
Sbjct: 28  LYRELREQVGDQHIGVIPEDGYYKDQSHL-------SMEERVKTNYDHPSAMD------- 73

Query: 344 *SNNLNPHHSLQAFQADSLLYMPLYNRREHAQ 439
             +NL   H LQA +A   + +PLY+  EH +
Sbjct: 74  --HNLLLEH-LQALKAGKPVELPLYSYTEHTR 102


>sp|A1JTX4|URK_YERE8 Uridine kinase OS=Yersinia enterocolitica
           serotype O:8 / biotype 1B (strain 8081) GN=udk PE=3 SV=1
          Length = 213

 Score = 31.2 bits (69), Expect = 3.3
 Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 5/92 (5%)
 Frame = +2

Query: 179 VYRKLMQHIVE--LS*VPEDG---DRLHCLIIPHSTTCR*RTKHSYSHP*ASDIHC*ILR 343
           +YR+L + + +  +  +PEDG   D+ H        +   R K +Y HP A D       
Sbjct: 28  LYRELREQVGDQHIGVIPEDGYYKDQSHL-------SMEERVKTNYDHPSAMD------- 73

Query: 344 *SNNLNPHHSLQAFQADSLLYMPLYNRREHAQ 439
             +NL   H LQ+ +A   + +PLY+  EH +
Sbjct: 74  --HNLLLEH-LQSLKAGKPIELPLYSYTEHTR 102


>sp|Q7XC54|HOX1_ORYSJ Homeobox-leucine zipper protein HOX1 OS=Oryza
           sativa subsp. japonica GN=HOX1 PE=1 SV=1
          Length = 311

 Score = 31.2 bits (69), Expect = 3.3
 Identities = 18/67 (26%), Positives = 32/67 (47%)
 Frame = -1

Query: 383 RLEVNGEDLDCWIISESNSGCQMLTDESMNVLSSTDRLWSVGLSSSAACPHLQVPMRVRQ 204
           R ++   ++DC ++      C+ LTDE+  +      L ++ L+++AA PH     RV  
Sbjct: 208 RTKLKQTEVDCELLKRC---CETLTDENRRLHRELQELRALKLATAAAAPHHLYGARVPP 264

Query: 203 CVALISC 183
              L  C
Sbjct: 265 PTTLTMC 271
tr_hit_id A7QBC1
Definition tr|A7QBC1|A7QBC1_VITVI Chromosome chr4 scaffold_73, whole genome shotgun sequence OS=Vitis vinifera
Align length 20
Score (bit) 39.7
E-value 0.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911572|Adiantum capillus-veneris mRNA, clone:
YMU001_000006_E08.
         (536 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7QBC1|A7QBC1_VITVI Chromosome chr4 scaffold_73, whole genome...    40   0.100
tr|Q06Z48|Q06Z48_COFCA Fibrillin 5 (Fragment) OS=Coffea canephor...    38   0.29 
tr|A9SG21|A9SG21_PHYPA Predicted protein OS=Physcomitrella paten...    38   0.38 
tr|A4CU39|A4CU39_SYNPV HAD-superfamily hydrolase subfamily IA, v...    36   1.1  
tr|Q0JD85|Q0JD85_ORYSJ Os04g0422000 protein OS=Oryza sativa subs...    35   1.9  
tr|Q01JZ6|Q01JZ6_ORYSA H0525E10.12 protein OS=Oryza sativa GN=H0...    35   1.9  
tr|A6N1C6|A6N1C6_ORYSI Plastid-lipid associated protein pap (Fra...    35   1.9  
tr|B6UEL0|B6UEL0_MAIZE Structural molecule OS=Zea mays PE=2 SV=1       35   3.2  
tr|B0R0D8|B0R0D8_DANRE Novel protein (Fragment) OS=Danio rerio G...    34   4.2  
tr|A5GKK0|A5GKK0_SYNPW Predicted phosphatase/phosphohexomutase O...    33   7.2  
tr|A3XC41|A3XC41_9RHOB Putative uncharacterized protein OS=Roseo...    33   7.2  
tr|Q6AZI0|Q6AZI0_XENLA HAS-rs protein OS=Xenopus laevis GN=HAS-r...    33   9.3  
tr|B8LN63|B8LN63_PICSI Putative uncharacterized protein OS=Picea...    33   9.3  

>tr|A7QBC1|A7QBC1_VITVI Chromosome chr4 scaffold_73, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00034898001
           PE=4 SV=1
          Length = 285

 Score = 39.7 bits (91), Expect = 0.100
 Identities = 15/20 (75%), Positives = 19/20 (95%)
 Frame = -2

Query: 535 DDEMRVGRDDKGNIFVLERT 476
           DD MR+GRDDKGN+F+LER+
Sbjct: 263 DDSMRIGRDDKGNLFILERS 282


>tr|Q06Z48|Q06Z48_COFCA Fibrillin 5 (Fragment) OS=Coffea canephora
           GN=FIB5 PE=4 SV=1
          Length = 222

 Score = 38.1 bits (87), Expect = 0.29
 Identities = 15/20 (75%), Positives = 19/20 (95%)
 Frame = -2

Query: 535 DDEMRVGRDDKGNIFVLERT 476
           D+ +R+GRDDKGNIFVLER+
Sbjct: 203 DENLRIGRDDKGNIFVLERS 222


>tr|A9SG21|A9SG21_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_129080 PE=4 SV=1
          Length = 178

 Score = 37.7 bits (86), Expect = 0.38
 Identities = 14/19 (73%), Positives = 18/19 (94%)
 Frame = -2

Query: 535 DDEMRVGRDDKGNIFVLER 479
           DD +R+GRDDKGN+F+LER
Sbjct: 159 DDSLRIGRDDKGNVFLLER 177


>tr|A4CU39|A4CU39_SYNPV HAD-superfamily hydrolase subfamily IA,
           variant 3 OS=Synechococcus sp. (strain WH7805)
           GN=WH7805_01927 PE=4 SV=1
          Length = 230

 Score = 36.2 bits (82), Expect = 1.1
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -1

Query: 395 YQLGRLEVNGEDLDCWIISESNSGCQMLTDESMNV 291
           Y+LG  ++N    DCW I +S++GCQ   +   NV
Sbjct: 160 YKLGASKLNVNPQDCWAIEDSDAGCQSAAEAGCNV 194


>tr|Q0JD85|Q0JD85_ORYSJ Os04g0422000 protein OS=Oryza sativa subsp.
           japonica GN=Os04g0422000 PE=2 SV=1
          Length = 278

 Score = 35.4 bits (80), Expect = 1.9
 Identities = 14/19 (73%), Positives = 17/19 (89%)
 Frame = -2

Query: 535 DDEMRVGRDDKGNIFVLER 479
           D+ +R+GRDDK NIFVLER
Sbjct: 254 DESLRIGRDDKANIFVLER 272


>tr|Q01JZ6|Q01JZ6_ORYSA H0525E10.12 protein OS=Oryza sativa
           GN=H0525E10.12 PE=4 SV=1
          Length = 278

 Score = 35.4 bits (80), Expect = 1.9
 Identities = 14/19 (73%), Positives = 17/19 (89%)
 Frame = -2

Query: 535 DDEMRVGRDDKGNIFVLER 479
           D+ +R+GRDDK NIFVLER
Sbjct: 254 DESLRIGRDDKANIFVLER 272


>tr|A6N1C6|A6N1C6_ORYSI Plastid-lipid associated protein pap
           (Fragment) OS=Oryza sativa subsp. indica PE=2 SV=1
          Length = 168

 Score = 35.4 bits (80), Expect = 1.9
 Identities = 14/19 (73%), Positives = 17/19 (89%)
 Frame = -2

Query: 535 DDEMRVGRDDKGNIFVLER 479
           D+ +R+GRDDK NIFVLER
Sbjct: 144 DESLRIGRDDKANIFVLER 162


>tr|B6UEL0|B6UEL0_MAIZE Structural molecule OS=Zea mays PE=2 SV=1
          Length = 257

 Score = 34.7 bits (78), Expect = 3.2
 Identities = 14/19 (73%), Positives = 17/19 (89%)
 Frame = -2

Query: 535 DDEMRVGRDDKGNIFVLER 479
           D+ +R+GRDDK NIFVLER
Sbjct: 232 DESLRIGRDDKENIFVLER 250


>tr|B0R0D8|B0R0D8_DANRE Novel protein (Fragment) OS=Danio rerio
           GN=CH211-191D15.6-001 PE=4 SV=1
          Length = 148

 Score = 34.3 bits (77), Expect = 4.2
 Identities = 14/46 (30%), Positives = 26/46 (56%)
 Frame = -3

Query: 195 INFLYTTILFVISFVCKLLGLLFVVLCNEYMAHRHSLAAWHSHKVF 58
           ++FL   +L +I     L+ ++F+V C   M+H+  L A++  K F
Sbjct: 76  VDFLKENLLLIIVVTALLVVIIFIVCCASAMSHKRKLEAYYPPKTF 121


>tr|A5GKK0|A5GKK0_SYNPW Predicted phosphatase/phosphohexomutase
           OS=Synechococcus sp. (strain WH7803) GN=SynWH7803_1039
           PE=4 SV=1
          Length = 221

 Score = 33.5 bits (75), Expect = 7.2
 Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
 Frame = -1

Query: 395 YQLGRLEVNGEDLDCWIISESNSGCQMLTDESMNV--LSSTDRLWSVGLSSSAACPH 231
           YQL  L++N    DCW   +S++GCQ        V  L  T+ L +        C H
Sbjct: 151 YQLAALKLNVRPQDCWAFEDSDAGCQSARQAGCTVWRLMPTNALSASSPLEDITCIH 207