BP911576 |
Clone id |
YMU001_000006_F01 |
Library |
YMU01 |
Length |
452 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000006_F01. |
Accession |
BP911576 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
CL2475Contig1 |
Sequence |
ATGTGATGTCAAGCGGTGATGTCTTGGTCCCATCTAGCCTTTGCTCTATGGGAGATCCAA AGGTGTCAGATTCGCGAATCAATGTTTCTGCTGACTTTCTGTGTGTAGTATATATCAATG TCGCACAGGTACTGCTCATCCAAAAAAAGGAAGCAAGAACTTCTGCACACAAGAAAAGGA GAGGCATGCCTGAAAGAGGTGCTGCAGACGAGCTTTGCAACCAAGCGGTGGAAATGGAGA GGCCTGACAAGTGGAAGGAAATGTTGCTGCAATCATCTTGATGTTTGTCTCTTAGGATGC CGACGCCCGGACTGAGATGAGGAGAAATGCCCAGCCTTATGAGGAGCTCAAGCAGGGCCT TCAATGTTTTCCACTCTGAGGAGGAAGGGTCCAAAGGGAACGTCTCCCTCACAAGACAAC GTTGCAAATTTTGCAGCAGATGGATGGCGCAG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q8C3S2 |
Definition |
sp|Q8C3S2|TMCO7_MOUSE Transmembrane and coiled-coil domain-containing protein 7 OS=Mus musculus |
Align length |
35 |
Score (bit) |
36.2 |
E-value |
0.067 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9RTL0 |
Definition |
tr|A9RTL0|A9RTL0_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
88 |
Score (bit) |
47.4 |
E-value |
0.0004 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP911576|Adiantum capillus-veneris mRNA, clone: YMU001_000006_F01. (452 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9RTL0|A9RTL0_PHYPA Predicted protein OS=Physcomitrella paten... 47 4e-04 tr|B6QGJ7|B6QGJ7_PENMA Putative uncharacterized protein OS=Penic... 38 0.29 tr|Q1LUE9|Q1LUE9_DANRE Novel protein (Fragment) OS=Danio rerio G... 37 0.65 tr|B7QM99|B7QM99_IXOSC Putative uncharacterized protein OS=Ixode... 36 0.84 tr|B1DK23|B1DK23_9BACL Transcriptional regulator, AraC family OS... 35 1.9 tr|Q4SRQ7|Q4SRQ7_TETNG Chromosome undetermined SCAF14503, whole ... 34 3.2 tr|Q5R5P8|Q5R5P8_PONAB Putative uncharacterized protein DKFZp469... 34 3.2 tr|B7P205|B7P205_IXOSC Putative uncharacterized protein OS=Ixode... 34 3.2 tr|B6NMI9|B6NMI9_BRAFL Putative uncharacterized protein (Fragmen... 34 3.2 tr|B6MP39|B6MP39_BRAFL Putative uncharacterized protein OS=Branc... 34 3.2 tr|B3L8S5|B3L8S5_PLAKH Elongation factor tu, putative OS=Plasmod... 34 4.2 tr|B8KM64|B8KM64_9GAMM Putative uncharacterized protein OS=gamma... 33 9.3 tr|A0YQF9|A0YQF9_9CYAN Sugar transferase OS=Lyngbya sp. PCC 8106... 33 9.3
>tr|A9RTL0|A9RTL0_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_160902 PE=4 SV=1 Length = 600
Score = 47.4 bits (111), Expect = 4e-04 Identities = 35/88 (39%), Positives = 46/88 (52%), Gaps = 10/88 (11%) Frame = -2
Query: 385 SSSEWKTLKALLELLIRLGISPHLSPGVGILRDKHQDDCS----------NISFHLSGLS 236 SSS+ +KA+LEL++R GI PHLSPGVGI +K + S ++S SG S Sbjct: 62 SSSDTTVVKAILELVVRWGIYPHLSPGVGIPLEKRFGEKSAASAAAALKEHVSGEGSGSS 121
Query: 235 ISTAWLQSSSAAPLSGMPLLFLCAEVLA 152 + Q S A P L AE+LA Sbjct: 122 VGLVGAQMSKDA-----PSLLQSAELLA 144
>tr|B6QGJ7|B6QGJ7_PENMA Putative uncharacterized protein OS=Penicillium marneffei ATCC 18224 GN=PMAA_085760 PE=4 SV=1 Length = 646
Score = 37.7 bits (86), Expect = 0.29 Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 1/73 (1%) Frame = -2
Query: 226 AWLQSSSAAPLSGMPLLFLCAEVLASFFWMSSTCATLIYTTHRKSAETLIRESDTFGSPI 47 AW++S ++P+ G+ + LC V S FW +S C I+T R++ E L+ + S Sbjct: 457 AWIESRISSPIVGLDISGLCFGV--SRFWEASLCRARIWTRLRQTQEVLLSKKSAKKSKK 514
Query: 46 EQRLDG-TKTSPL 11 +D + T PL Sbjct: 515 LSEIDSESLTGPL 527
>tr|Q1LUE9|Q1LUE9_DANRE Novel protein (Fragment) OS=Danio rerio GN=si:ch211-218c6.2 PE=4 SV=1 Length = 1047
Score = 36.6 bits (83), Expect = 0.65 Identities = 17/37 (45%), Positives = 27/37 (72%), Gaps = 3/37 (8%) Frame = -2
Query: 397 PLDP---SSSEWKTLKALLELLIRLGISPHLSPGVGI 296 PL P S ++ KTL A+L+ ++ LG+ P+L+PGVG+ Sbjct: 101 PLPPDVLSVAQQKTLGAVLQFVVTLGLCPYLAPGVGV 137
>tr|B7QM99|B7QM99_IXOSC Putative uncharacterized protein OS=Ixodes scapularis GN=IscW_ISCW014759 PE=4 SV=1 Length = 219
Score = 36.2 bits (82), Expect = 0.84 Identities = 18/37 (48%), Positives = 26/37 (70%), Gaps = 3/37 (8%) Frame = -2
Query: 397 PLDPSSS---EWKTLKALLELLIRLGISPHLSPGVGI 296 PL PSS + KT++ LL+ ++ LGI P+L PGVG+ Sbjct: 109 PLPPSSLGVLQQKTVQGLLQFVVALGIYPNLLPGVGV 145
>tr|B1DK23|B1DK23_9BACL Transcriptional regulator, AraC family OS=Paenibacillus sp. JDR-2 GN=Pjdr2DRAFT_5474 PE=4 SV=1 Length = 289
Score = 35.0 bits (79), Expect = 1.9 Identities = 26/104 (25%), Positives = 49/104 (47%) Frame = -2
Query: 442 HLLQNLQRCLVRETFPLDPSSSEWKTLKALLELLIRLGISPHLSPGVGILRDKHQDDCSN 263 HL+ ++ L + T+P WK ++ L+ + I H G + +HQ + Sbjct: 10 HLVVHIHLILDKSTYP------GWKDIRNLVNVHSLYWI--HEGRGTFLTNTEHQVEAGM 61
Query: 262 ISFHLSGLSISTAWLQSSSAAPLSGMPLLFLCAEVLASFFWMSS 131 +++ GL +S ++S APL +LF CAE++ W ++ Sbjct: 62 LAYLRPGLEMS---MRSDPEAPLRMTMVLFDCAELVYEAVWKNT 102
>tr|Q4SRQ7|Q4SRQ7_TETNG Chromosome undetermined SCAF14503, whole genome shotgun sequence OS=Tetraodon nigroviridis GN=GSTENG00013797001 PE=4 SV=1 Length = 1156
Score = 34.3 bits (77), Expect = 3.2 Identities = 16/36 (44%), Positives = 25/36 (69%), Gaps = 3/36 (8%) Frame = -2
Query: 397 PLDP---SSSEWKTLKALLELLIRLGISPHLSPGVG 299 PL P S ++ KTL + L+ ++ LG+ P+L+PGVG Sbjct: 115 PLSPDVLSVTQQKTLASALQFVVSLGLCPYLAPGVG 150
>tr|Q5R5P8|Q5R5P8_PONAB Putative uncharacterized protein DKFZp469P1614 OS=Pongo abelii GN=DKFZp469P1614 PE=2 SV=1 Length = 984
Score = 34.3 bits (77), Expect = 3.2 Identities = 14/30 (46%), Positives = 23/30 (76%) Frame = -2
Query: 385 SSSEWKTLKALLELLIRLGISPHLSPGVGI 296 S S+ KT++ +L+ ++ LGI P+L PGVG+ Sbjct: 139 SISQQKTVQFVLQFVVTLGICPYLMPGVGV 168
>tr|B7P205|B7P205_IXOSC Putative uncharacterized protein OS=Ixodes scapularis GN=IscW_ISCW001505 PE=4 SV=1 Length = 145
Score = 34.3 bits (77), Expect = 3.2 Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 1/72 (1%) Frame = -2
Query: 241 LSISTAWL-QSSSAAPLSGMPLLFLCAEVLASFFWMSSTCATLIYTTHRKSAETLIRESD 65 LS+S+A L +++ P+S +FLC + L +F + +S A I H S+ETL+ + Sbjct: 61 LSVSSATLCGAANIQPVSWYATIFLCVQSLVNFVYFASILAQTI--GHCGSSETLLERRE 118
Query: 64 TFGSPIEQRLDG 29 S I +RL G Sbjct: 119 RLQS-ISRRLSG 129
>tr|B6NMI9|B6NMI9_BRAFL Putative uncharacterized protein (Fragment) OS=Branchiostoma floridae GN=BRAFLDRAFT_232484 PE=4 SV=1 Length = 1020
Score = 34.3 bits (77), Expect = 3.2 Identities = 18/37 (48%), Positives = 24/37 (64%), Gaps = 3/37 (8%) Frame = -2
Query: 397 PLDP---SSSEWKTLKALLELLIRLGISPHLSPGVGI 296 PL P S ++ KTL L+ ++ LGI P+L PGVGI Sbjct: 80 PLSPDTLSIAQQKTLSTALQFVVCLGICPNLLPGVGI 116
>tr|B6MP39|B6MP39_BRAFL Putative uncharacterized protein OS=Branchiostoma floridae GN=BRAFLDRAFT_124034 PE=4 SV=1 Length = 1112
Score = 34.3 bits (77), Expect = 3.2 Identities = 18/37 (48%), Positives = 24/37 (64%), Gaps = 3/37 (8%) Frame = -2
Query: 397 PLDP---SSSEWKTLKALLELLIRLGISPHLSPGVGI 296 PL P S ++ KTL L+ ++ LGI P+L PGVGI Sbjct: 140 PLSPDTLSIAQQKTLSTALQFVVCLGICPNLLPGVGI 176
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