BP911577 |
Clone id |
YMU001_000006_F02 |
Library |
YMU01 |
Length |
475 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000006_F02. |
Accession |
BP911577 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
CL1057Contig1 |
Sequence |
CCAAAAATGAGTACTGATGAGCAGTGTGATTCGTAAAGCTTTCTACAAAATTACAAAGGA ATTCCAACAAGCGAGCCCAAAGCATCCCGCAAGAAGTGACTCGAGTATATGTCCTTGCAG ATGCCAAATTTGACACAATAGAGGAGAAGAACTGAGCTCTACATCATGTCATGAAACCTG GCGAGTGCTTTCTTCTGAATAACGACACGATAACTATCACCAGGCTGTGTCTCAAATCTG GCATCCGCCTTGCGCTGCTGAGATTGGCTCCCTAGGCCAGCCCTCACATCCATCGACGTA GCCTGAACAGGTTCAACAATACCAGTACCATCCTTGCCAAGCCCAGATCCTTCTTGCCAT CCCATACTCCGGAGCATCCGATTGCCAACATTTCTCTCATCTATAGCTGTCTCTGCAGTT ATCACTTCAAATGCTTGAACTTCTGGACCTCCCGAAGCAGCTCCTGGTGGAGGAG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q91YE7 |
Definition |
sp|Q91YE7|RBM5_MOUSE RNA-binding protein 5 OS=Mus musculus |
Align length |
80 |
Score (bit) |
63.5 |
E-value |
4.0e-10 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9RWI0 |
Definition |
tr|A9RWI0|A9RWI0_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
101 |
Score (bit) |
155.0 |
E-value |
1.0e-36 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP911577|Adiantum capillus-veneris mRNA, clone: YMU001_000006_F02. (475 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9RWI0|A9RWI0_PHYPA Predicted protein OS=Physcomitrella paten... 155 1e-36 tr|A7PCC5|A7PCC5_VITVI Chromosome chr2 scaffold_11, whole genome... 140 4e-32 tr|A5BEC7|A5BEC7_VITVI Putative uncharacterized protein OS=Vitis... 140 4e-32 tr|Q9M383|Q9M383_ARATH Putative uncharacterized protein F24B22.1... 137 3e-31 tr|Q8VYR8|Q8VYR8_ARATH Putative uncharacterized protein At3g5423... 137 3e-31 tr|A9S0V2|A9S0V2_PHYPA Predicted protein OS=Physcomitrella paten... 132 1e-29 tr|A0EXV5|A0EXV5_9FABA Putative RNA-binding protein (Fragment) O... 126 6e-28 tr|Q6H4V9|Q6H4V9_ORYSJ Putative RNA-binding protein 10 OS=Oryza ... 125 1e-27 tr|B8AIH3|B8AIH3_ORYSI Putative uncharacterized protein OS=Oryza... 125 1e-27 tr|A3A3I6|A3A3I6_ORYSJ Putative uncharacterized protein OS=Oryza... 125 1e-27 tr|A7RK53|A7RK53_NEMVE Predicted protein OS=Nematostella vectens... 73 6e-12 tr|A0JMV4|A0JMV4_XENLA MGC154798 protein OS=Xenopus laevis GN=rb... 70 5e-11 tr|Q6DDU9|Q6DDU9_XENLA Rbm5-prov protein OS=Xenopus laevis GN=rb... 70 7e-11 tr|Q28D22|Q28D22_XENTR RNA binding motif protein 5 OS=Xenopus tr... 70 7e-11 tr|A4IGK4|A4IGK4_XENTR Rbm5 protein OS=Xenopus tropicalis GN=rbm... 70 7e-11 tr|Q55EN0|Q55EN0_DICDI C2H2-type Zn finger-containing protein OS... 68 3e-10 tr|A8XG21|A8XG21_CAEBR Putative uncharacterized protein OS=Caeno... 68 3e-10 tr|A8NYF1|A8NYF1_BRUMA G-patch domain containing protein OS=Brug... 65 1e-09 tr|Q9GYS7|Q9GYS7_CAEEL Putative uncharacterized protein OS=Caeno... 64 3e-09 tr|Q9BIC2|Q9BIC2_CAEEL Putative uncharacterized protein OS=Caeno... 64 3e-09 tr|Q8T8N7|Q8T8N7_CAEEL Putative uncharacterized protein OS=Caeno... 64 3e-09 tr|Q86NK0|Q86NK0_CAEEL Putative uncharacterized protein OS=Caeno... 64 3e-09 tr|Q86NJ9|Q86NJ9_CAEEL Putative uncharacterized protein OS=Caeno... 64 3e-09 tr|A9URA0|A9URA0_MONBE Predicted protein OS=Monosiga brevicollis... 64 3e-09 tr|Q5EB71|Q5EB71_RAT Rbm5 protein (Fragment) OS=Rattus norvegicu... 64 5e-09 tr|B2GV05|B2GV05_RAT Rbm5 protein (RNA binding motif protein 5) ... 64 5e-09 tr|Q59HE6|Q59HE6_HUMAN RNA binding motif protein 5 variant (Frag... 64 5e-09 tr|B4DZ63|B4DZ63_HUMAN cDNA FLJ53682, highly similar to RNA-bind... 64 5e-09 tr|B4DM16|B4DM16_HUMAN cDNA FLJ53356, highly similar to RNA-bind... 64 5e-09 tr|B2RA45|B2RA45_HUMAN cDNA, FLJ94692, Homo sapiens RNA binding ... 64 5e-09
>tr|A9RWI0|A9RWI0_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_161416 PE=4 SV=1 Length = 1153
Score = 155 bits (391), Expect = 1e-36 Identities = 75/101 (74%), Positives = 85/101 (84%) Frame = -3
Query: 464 GAASGGPEVQAFEVITAETAIDERNVGNRMLRSMGWQEGSGLGKDGTGIVEPVQATSMDV 285 GA GG E ++FEVITAE A+D NVGNRMLR+MGWQEGSGLGK+GTGIVEPV A Sbjct: 1053 GAVMGGAETESFEVITAERALDASNVGNRMLRNMGWQEGSGLGKEGTGIVEPVLAQGAGE 1112
Query: 284 RAGLGSQSQQRKADARFETQPGDSYRVVIQKKALARFHDMM 162 RAGLGS SQQ+K D+RFET PGDSYR+VIQKKALARFH+M+ Sbjct: 1113 RAGLGSHSQQKKTDSRFETLPGDSYRIVIQKKALARFHEMI 1153
>tr|A7PCC5|A7PCC5_VITVI Chromosome chr2 scaffold_11, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00015806001 PE=4 SV=1 Length = 989
Score = 140 bits (352), Expect = 4e-32 Identities = 73/108 (67%), Positives = 82/108 (75%), Gaps = 6/108 (5%) Frame = -3
Query: 470 PPGAASG------GPEVQAFEVITAETAIDERNVGNRMLRSMGWQEGSGLGKDGTGIVEP 309 PPG G VQ++EVITA+ AIDE NVGNRMLRSMGWQEGSGLGKDG+G+VEP Sbjct: 883 PPGVGGGRGMGDANGNVQSYEVITADKAIDESNVGNRMLRSMGWQEGSGLGKDGSGMVEP 942
Query: 308 VQATSMDVRAGLGSQSQQRKADARFETQPGDSYRVVIQKKALARFHDM 165 VQA +MD RAGLG S Q+K D E QPGDSYR +IQKKALARF +M Sbjct: 943 VQAQAMDSRAGLG--SHQKKLDPGLEVQPGDSYRTLIQKKALARFQEM 988
>tr|A5BEC7|A5BEC7_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_013474 PE=4 SV=1 Length = 1070
Score = 140 bits (352), Expect = 4e-32 Identities = 73/108 (67%), Positives = 82/108 (75%), Gaps = 6/108 (5%) Frame = -3
Query: 470 PPGAASG------GPEVQAFEVITAETAIDERNVGNRMLRSMGWQEGSGLGKDGTGIVEP 309 PPG G VQ++EVITA+ AIDE NVGNRMLRSMGWQEGSGLGKDG+G+VEP Sbjct: 964 PPGVGGGRGMGDANGNVQSYEVITADKAIDESNVGNRMLRSMGWQEGSGLGKDGSGMVEP 1023
Query: 308 VQATSMDVRAGLGSQSQQRKADARFETQPGDSYRVVIQKKALARFHDM 165 VQA +MD RAGLG S Q+K D E QPGDSYR +IQKKALARF +M Sbjct: 1024 VQAQAMDSRAGLG--SHQKKLDPGLEVQPGDSYRTLIQKKALARFQEM 1069
>tr|Q9M383|Q9M383_ARATH Putative uncharacterized protein F24B22.190 OS=Arabidopsis thaliana GN=F24B22.190 PE=4 SV=1 Length = 1105
Score = 137 bits (344), Expect = 3e-31 Identities = 70/106 (66%), Positives = 80/106 (75%), Gaps = 4/106 (3%) Frame = -3
Query: 470 PPGAASGG----PEVQAFEVITAETAIDERNVGNRMLRSMGWQEGSGLGKDGTGIVEPVQ 303 PPG G EV +F+VIT E AIDE NVGNRMLR+MGW EGSGLGKDG+G+ EPVQ Sbjct: 998 PPGVGGRGITTSTEVSSFDVITEERAIDESNVGNRMLRNMGWHEGSGLGKDGSGMKEPVQ 1057
Query: 302 ATSMDVRAGLGSQSQQRKADARFETQPGDSYRVVIQKKALARFHDM 165 A +D RAGLG SQQ+K DA FE QPGD+YR ++ KKALARF DM Sbjct: 1058 AQGVDRRAGLG--SQQKKVDAEFEVQPGDTYRTLLHKKALARFRDM 1101
>tr|Q8VYR8|Q8VYR8_ARATH Putative uncharacterized protein At3g54230 OS=Arabidopsis thaliana GN=At3g54230 PE=2 SV=1 Length = 1007
Score = 137 bits (344), Expect = 3e-31 Identities = 70/106 (66%), Positives = 80/106 (75%), Gaps = 4/106 (3%) Frame = -3
Query: 470 PPGAASGG----PEVQAFEVITAETAIDERNVGNRMLRSMGWQEGSGLGKDGTGIVEPVQ 303 PPG G EV +F+VIT E AIDE NVGNRMLR+MGW EGSGLGKDG+G+ EPVQ Sbjct: 900 PPGVGGRGITTSTEVSSFDVITEERAIDESNVGNRMLRNMGWHEGSGLGKDGSGMKEPVQ 959
Query: 302 ATSMDVRAGLGSQSQQRKADARFETQPGDSYRVVIQKKALARFHDM 165 A +D RAGLG SQQ+K DA FE QPGD+YR ++ KKALARF DM Sbjct: 960 AQGVDRRAGLG--SQQKKVDAEFEVQPGDTYRTLLHKKALARFRDM 1003
>tr|A9S0V2|A9S0V2_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_56617 PE=4 SV=1 Length = 888
Score = 132 bits (331), Expect = 1e-29 Identities = 64/88 (72%), Positives = 74/88 (84%) Frame = -3
Query: 425 VITAETAIDERNVGNRMLRSMGWQEGSGLGKDGTGIVEPVQATSMDVRAGLGSQSQQRKA 246 +ITAE A+D NVGNRMLR+MGWQEGSGLGK+ TGIVEP+ A RAGLGS +QQ+ Sbjct: 801 LITAERALDASNVGNRMLRNMGWQEGSGLGKERTGIVEPLLAKGAGERAGLGSHNQQKNT 860
Query: 245 DARFETQPGDSYRVVIQKKALARFHDMM 162 D+RFET PGDSYRVVIQKKALARFH+M+ Sbjct: 861 DSRFETLPGDSYRVVIQKKALARFHEMI 888
>tr|A0EXV5|A0EXV5_9FABA Putative RNA-binding protein (Fragment) OS=Ammopiptanthus mongolicus PE=2 SV=1 Length = 264
Score = 126 bits (316), Expect = 6e-28 Identities = 64/106 (60%), Positives = 78/106 (73%), Gaps = 4/106 (3%) Frame = -3
Query: 470 PPGAASG----GPEVQAFEVITAETAIDERNVGNRMLRSMGWQEGSGLGKDGTGIVEPVQ 303 PPG G + FEVITA+ AIDE NVGNRMLR+MGWQEG GLGKDG+G++EPVQ Sbjct: 158 PPGVGGGRVVGDVNLDTFEVITADKAIDENNVGNRMLRNMGWQEGLGLGKDGSGMIEPVQ 217
Query: 302 ATSMDVRAGLGSQSQQRKADARFETQPGDSYRVVIQKKALARFHDM 165 +++ RAGLG SQQ+K D E Q GDSY+++I KKALARF +M Sbjct: 218 TQAVENRAGLG--SQQKKLDPSLEVQAGDSYKMLIHKKALARFREM 261
>tr|Q6H4V9|Q6H4V9_ORYSJ Putative RNA-binding protein 10 OS=Oryza sativa subsp. japonica GN=OSJNBa0085K21.34-2 PE=4 SV=1 Length = 928
Score = 125 bits (314), Expect = 1e-27 Identities = 66/106 (62%), Positives = 80/106 (75%), Gaps = 4/106 (3%) Frame = -3
Query: 470 PPGAA--SGGP--EVQAFEVITAETAIDERNVGNRMLRSMGWQEGSGLGKDGTGIVEPVQ 303 PPG S G + +EVITA+ AIDE NVGNR+LR+MGWQEG GLGK G+GI EPVQ Sbjct: 823 PPGVGERSSGEIGNTENYEVITADRAIDESNVGNRILRNMGWQEGLGLGKTGSGIKEPVQ 882
Query: 302 ATSMDVRAGLGSQSQQRKADARFETQPGDSYRVVIQKKALARFHDM 165 A S+DVRAGLGSQ Q++ +D E Q GDSY+ +IQKKA+ARF +M Sbjct: 883 AKSVDVRAGLGSQ-QRKSSDPSLEAQAGDSYKTIIQKKAMARFREM 927
>tr|B8AIH3|B8AIH3_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_05999 PE=4 SV=1 Length = 1061
Score = 125 bits (314), Expect = 1e-27 Identities = 66/106 (62%), Positives = 80/106 (75%), Gaps = 4/106 (3%) Frame = -3
Query: 470 PPGAA--SGGP--EVQAFEVITAETAIDERNVGNRMLRSMGWQEGSGLGKDGTGIVEPVQ 303 PPG S G + +EVITA+ AIDE NVGNR+LR+MGWQEG GLGK G+GI EPVQ Sbjct: 956 PPGVGERSSGEIGNTENYEVITADRAIDESNVGNRILRNMGWQEGLGLGKTGSGIKEPVQ 1015
Query: 302 ATSMDVRAGLGSQSQQRKADARFETQPGDSYRVVIQKKALARFHDM 165 A S+DVRAGLGSQ Q++ +D E Q GDSY+ +IQKKA+ARF +M Sbjct: 1016 AKSVDVRAGLGSQ-QRKSSDPSLEAQAGDSYKTIIQKKAMARFREM 1060
>tr|A3A3I6|A3A3I6_ORYSJ Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_005358 PE=4 SV=1 Length = 1038
Score = 125 bits (314), Expect = 1e-27 Identities = 66/106 (62%), Positives = 80/106 (75%), Gaps = 4/106 (3%) Frame = -3
Query: 470 PPGAA--SGGP--EVQAFEVITAETAIDERNVGNRMLRSMGWQEGSGLGKDGTGIVEPVQ 303 PPG S G + +EVITA+ AIDE NVGNR+LR+MGWQEG GLGK G+GI EPVQ Sbjct: 933 PPGVGERSSGEIGNTENYEVITADRAIDESNVGNRILRNMGWQEGLGLGKTGSGIKEPVQ 992
Query: 302 ATSMDVRAGLGSQSQQRKADARFETQPGDSYRVVIQKKALARFHDM 165 A S+DVRAGLGSQ Q++ +D E Q GDSY+ +IQKKA+ARF +M Sbjct: 993 AKSVDVRAGLGSQ-QRKSSDPSLEAQAGDSYKTIIQKKAMARFREM 1037
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