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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP911587
Clone id YMU001_000006_G02
Library
Length 514
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000006_G02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GGGATTCCTGTTATTTTTGACAGATAACATCATATTCTAGGCTTGATGTAGAAGTGCTCT
TTTCTATTTAATGTTATGCAATATTAATCTAGAAGATACAAAATCTTTCTTTTCAAAAAG
TGATGATGACACCTATTAATGACTAATCCGTATTTTTTTTAGTGTCTACTTTTCACGTAG
CATCTACTTCTAAGCACCGCGATCAAGAGCTTGCACTCAGCACGTGCATACATAATATCT
ACATCAACATGGGACCACACTTGAAGACATCCTTTCTCACATTTTTTTGGATCAATGACC
ACACTGTGCGATTGTGGCTTGATTGATCTAGTCACTCTACCCCCACTCGCCCCATTTTGG
CAGTGTACCCACATCGTGTGCAAAAGGATTCAATGATTTTTTCACTCCTCCCCCTATCGC
ACCGGTCCAGCTCTTGTCCATAGCGCTCTAGTCATCTGTGAGCTTGTCACCCTCCTATCG
CATTGTTCTAGGAGTACCTGCAGGTAATATCTCA
■■Homology search results ■■ -
sp_hit_id Q54EQ9
Definition sp|Q54EQ9|Y1586_DICDI Putative uncharacterized protein DDB_G0291608 OS=Dictyostelium discoideum
Align length 29
Score (bit) 30.0
E-value 6.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911587|Adiantum capillus-veneris mRNA, clone:
YMU001_000006_G02.
         (514 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q54EQ9|Y1586_DICDI Putative uncharacterized protein DDB_G0291...    30   6.7  

>sp|Q54EQ9|Y1586_DICDI Putative uncharacterized protein DDB_G0291608
           OS=Dictyostelium discoideum GN=DDB_G0291608 PE=4 SV=1
          Length = 919

 Score = 30.0 bits (66), Expect = 6.7
 Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +2

Query: 341 PHSPHFGSVPT-SCAKGFNDFFTPPPIAP 424
           PHSPH+GS P  +  KG N+F    P  P
Sbjct: 673 PHSPHYGSSPNLNGGKGSNNFLQSIPEVP 701
tr_hit_id Q01F65
Definition tr|Q01F65|Q01F65_OSTTA Putative uncharacterized protein Cup201 OS=Ostreococcus tauri
Align length 71
Score (bit) 34.7
E-value 2.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911587|Adiantum capillus-veneris mRNA, clone:
YMU001_000006_G02.
         (514 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q01F65|Q01F65_OSTTA Putative uncharacterized protein Cup201 O...    35   2.8  

>tr|Q01F65|Q01F65_OSTTA Putative uncharacterized protein Cup201
           OS=Ostreococcus tauri GN=Cup201 PE=4 SV=2
          Length = 441

 Score = 34.7 bits (78), Expect = 2.8
 Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
 Frame = -3

Query: 299 VIDPKKCEKGCLQVWSHVDVDIMYARAECKLLIAVLRSRCYVKSRH*KKY--GLVINRCH 126
           V++PK+C+    ++WSH++      R E     +VL S+ Y  +     +   +V NRC+
Sbjct: 123 VLNPKQCKDTAAEIWSHLERQYPELRREVPSTYSVLSSKTYGLASEPAIFTPQIVRNRCN 182

Query: 125 HHFLKRKILYL 93
            + +K   L L
Sbjct: 183 QYVVKALRLLL 193