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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP911597
Clone id YMU001_000006_H04
Library
Length 171
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000006_H04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CAGGTACTCGGAGAGCCGGAATCATATGAAGAAGCTATGCAACATGAATCCAAAGAAGAA
TGGACGAAGAGCATGCAAGTGGAGATGGACTCACTACATCGCAACCAAACATGGGAGTTG
GTTGAGTTGCCTAAAGGTAAGCGGGCACTTCAAAACAAATGGGTGTACAAG
■■Homology search results ■■ -
sp_hit_id P10978
Definition sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum
Align length 53
Score (bit) 66.6
E-value 4.0e-11
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911597|Adiantum capillus-veneris mRNA, clone:
YMU001_000006_H04.
         (171 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from tra...    67   4e-11
sp|P92520|M820_ARATH Uncharacterized mitochondrial protein AtMg0...    43   6e-04
sp|P04146|COPIA_DROME Copia protein OS=Drosophila melanogaster G...    42   0.001
sp|Q8BZL1|NEUR4_MOUSE Sialidase-4 OS=Mus musculus GN=Neu4 PE=2 SV=2    30   2.9  
sp|O88387|FGD4_RAT FYVE, RhoGEF and PH domain-containing protein...    30   2.9  
sp|Q91ZT5|FGD4_MOUSE FYVE, RhoGEF and PH domain-containing prote...    30   3.7  
sp|Q5QJ38|TCHL1_HUMAN Trichohyalin-like protein 1 OS=Homo sapien...    30   4.9  
sp|Q96M96|FGD4_HUMAN FYVE, RhoGEF and PH domain-containing prote...    29   6.4  
sp|P38213|YBL7_YEAST Uncharacterized protein YBR007C OS=Saccharo...    29   8.3  
sp|Q6HDK6|GRPE_BACHK Protein grpE OS=Bacillus thuringiensis subs...    29   8.3  
sp|Q634M6|GRPE_BACCZ Protein grpE OS=Bacillus cereus (strain ZK ...    29   8.3  
sp|Q818E8|GRPE_BACCR Protein grpE OS=Bacillus cereus (strain ATC...    29   8.3  
sp|Q81LS1|GRPE_BACAN Protein grpE OS=Bacillus anthracis GN=grpE ...    29   8.3  

>sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from
           transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1
          Length = 1328

 Score = 66.6 bits (161), Expect = 4e-11
 Identities = 30/53 (56%), Positives = 40/53 (75%)
 Frame = +1

Query: 13  EPESYEEAMQHESKEEWTKSMQVEMDSLHRNQTWELVELPKGKRALQNKWVYK 171
           EPES +E + H  K +  K+MQ EM+SL +N T++LVELPKGKR L+ KWV+K
Sbjct: 810 EPESLKEVLSHPEKNQLMKAMQEEMESLQKNGTYKLVELPKGKRPLKCKWVFK 862


>sp|P92520|M820_ARATH Uncharacterized mitochondrial protein
           AtMg00820 OS=Arabidopsis thaliana GN=AtMg00820 PE=4 SV=1
          Length = 170

 Score = 42.7 bits (99), Expect = 6e-04
 Identities = 22/53 (41%), Positives = 32/53 (60%)
 Frame = +1

Query: 13  EPESYEEAMQHESKEEWTKSMQVEMDSLHRNQTWELVELPKGKRALQNKWVYK 171
           EP+S   A++      W ++MQ E+D+L RN+TW LV  P  +  L  KWV+K
Sbjct: 27  EPKSVIFALKDPG---WCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFK 76


>sp|P04146|COPIA_DROME Copia protein OS=Drosophila melanogaster GN=GIP
            PE=1 SV=3
          Length = 1409

 Score = 42.0 bits (97), Expect = 0.001
 Identities = 13/51 (25%), Positives = 29/51 (56%)
 Frame = +1

Query: 16   PESYEEAMQHESKEEWTKSMQVEMDSLHRNQTWELVELPKGKRALQNKWVY 168
            P S++E    + K  W +++  E+++   N TW + + P+ K  + ++WV+
Sbjct: 891  PNSFDEIQYRDDKSSWEEAINTELNAHKINNTWTITKRPENKNIVDSRWVF 941


>sp|Q8BZL1|NEUR4_MOUSE Sialidase-4 OS=Mus musculus GN=Neu4 PE=2 SV=2
          Length = 501

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +1

Query: 52  KEEWTKSMQVEMDSLHRNQTWELVELPKGKRALQNKWVY 168
           K  WT    +  DS+ ++ TW L   P G+RA  +  +Y
Sbjct: 374 KTSWTPECPMSSDSMLQSPTWLLYSHPAGRRARLHMGIY 412


>sp|O88387|FGD4_RAT FYVE, RhoGEF and PH domain-containing protein 4
           OS=Rattus norvegicus GN=Fgd4 PE=1 SV=1
          Length = 766

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 15/40 (37%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
 Frame = +1

Query: 1   QVLGEPESYE-EAMQHESKEEWTKSMQVEMDSLH-RNQTW 114
           QV G+  + E +A   + KEEW K++Q  +D+ H R++T+
Sbjct: 491 QVSGKERTLELQASSEQDKEEWIKALQESIDAFHQRHETF 530


>sp|Q91ZT5|FGD4_MOUSE FYVE, RhoGEF and PH domain-containing protein
           4 OS=Mus musculus GN=Fgd4 PE=2 SV=1
          Length = 766

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 14/40 (35%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
 Frame = +1

Query: 1   QVLGEPESYE-EAMQHESKEEWTKSMQVEMDSLH-RNQTW 114
           Q+ G+  + E +A   + KEEW K++Q  +D+ H R++T+
Sbjct: 491 QISGKERTLELQASSEQDKEEWIKALQESIDAFHQRHETF 530


>sp|Q5QJ38|TCHL1_HUMAN Trichohyalin-like protein 1 OS=Homo sapiens
           GN=TCHHL1 PE=2 SV=1
          Length = 904

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = +1

Query: 7   LGEPESYEEAMQHESKEEWTKSMQVEMDSLHRNQTWELVELPKGKR 144
           LGEPE Y    + + KE  TK + V+  S + ++T ++ +  K +R
Sbjct: 350 LGEPEDYGRTSETQEKECETKDLPVQYGSRNGSETSDMRDERKERR 395


>sp|Q96M96|FGD4_HUMAN FYVE, RhoGEF and PH domain-containing protein
           4 OS=Homo sapiens GN=FGD4 PE=1 SV=2
          Length = 766

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 15/40 (37%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
 Frame = +1

Query: 1   QVLGEPESYE-EAMQHESKEEWTKSMQVEMDSLH-RNQTW 114
           QV G+  + E +A   + KEEW K++Q  +D+ H R++T+
Sbjct: 491 QVSGKERTLELQASSAQDKEEWIKALQETIDAFHQRHETF 530


>sp|P38213|YBL7_YEAST Uncharacterized protein YBR007C
           OS=Saccharomyces cerevisiae GN=YBR007C PE=1 SV=1
          Length = 736

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +1

Query: 61  WTKSMQVEMDSLHRNQTWELVELPKGKRALQNKWVYK 171
           W+K+  V+   L R   W  +   KG   L + W+YK
Sbjct: 691 WSKTSNVKKRDLARAAAWFRIADKKGANLLGSDWIYK 727


>sp|Q6HDK6|GRPE_BACHK Protein grpE OS=Bacillus thuringiensis subsp.
           konkukian GN=grpE PE=3 SV=1
          Length = 188

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 13/33 (39%), Positives = 22/33 (66%)
 Frame = +1

Query: 4   VLGEPESYEEAMQHESKEEWTKSMQVEMDSLHR 102
           +L   +++E AMQ E+ +E TKS+   M+ +HR
Sbjct: 90  ILPALDNFERAMQVEATDEQTKSLLQGMEMVHR 122
tr_hit_id Q9ZRJ0
Definition tr|Q9ZRJ0|Q9ZRJ0_TOBAC Retrotransposon Tto1 DNA OS=Nicotiana tabacum
Align length 54
Score (bit) 80.9
E-value 3.0e-14
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911597|Adiantum capillus-veneris mRNA, clone:
YMU001_000006_H04.
         (171 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q9ZRJ0|Q9ZRJ0_TOBAC Retrotransposon Tto1 DNA OS=Nicotiana tab...    81   3e-14
tr|A5C540|A5C540_VITVI Putative uncharacterized protein OS=Vitis...    81   3e-14
tr|A5AIP8|A5AIP8_VITVI Putative uncharacterized protein OS=Vitis...    81   3e-14
tr|A5C9D7|A5C9D7_VITVI Putative uncharacterized protein OS=Vitis...    79   1e-13
tr|A5C2E5|A5C2E5_VITVI Putative uncharacterized protein OS=Vitis...    79   1e-13
tr|A5BVV6|A5BVV6_VITVI Putative uncharacterized protein (Fragmen...    79   1e-13
tr|A5BD56|A5BD56_VITVI Putative uncharacterized protein OS=Vitis...    79   1e-13
tr|A5B377|A5B377_VITVI Putative uncharacterized protein OS=Vitis...    79   1e-13
tr|A5CA02|A5CA02_VITVI Putative uncharacterized protein OS=Vitis...    79   1e-13
tr|A5BA77|A5BA77_VITVI Putative uncharacterized protein (Fragmen...    79   1e-13
tr|A5CBM1|A5CBM1_VITVI Putative uncharacterized protein OS=Vitis...    78   2e-13
tr|A5CAX7|A5CAX7_VITVI Putative uncharacterized protein OS=Vitis...    78   2e-13
tr|A5C5L2|A5C5L2_VITVI Putative uncharacterized protein OS=Vitis...    78   2e-13
tr|A5BK92|A5BK92_VITVI Putative uncharacterized protein OS=Vitis...    78   2e-13
tr|A5BJQ3|A5BJQ3_VITVI Putative uncharacterized protein OS=Vitis...    78   2e-13
tr|A5B9T5|A5B9T5_VITVI Putative uncharacterized protein OS=Vitis...    78   2e-13
tr|A5B0C8|A5B0C8_VITVI Putative uncharacterized protein OS=Vitis...    78   2e-13
tr|A5AVU6|A5AVU6_VITVI Putative uncharacterized protein OS=Vitis...    78   2e-13
tr|A5AQN2|A5AQN2_VITVI Putative uncharacterized protein OS=Vitis...    78   2e-13
tr|A5AMG2|A5AMG2_VITVI Putative uncharacterized protein OS=Vitis...    78   2e-13
tr|A5AER2|A5AER2_VITVI Putative uncharacterized protein OS=Vitis...    78   2e-13
tr|A5C6L3|A5C6L3_VITVI Putative uncharacterized protein OS=Vitis...    77   3e-13
tr|A5BIC7|A5BIC7_VITVI Putative uncharacterized protein OS=Vitis...    77   3e-13
tr|A5BE96|A5BE96_VITVI Putative uncharacterized protein OS=Vitis...    77   3e-13
tr|A5B5N4|A5B5N4_VITVI Putative uncharacterized protein OS=Vitis...    77   3e-13
tr|A5AM64|A5AM64_VITVI Putative uncharacterized protein OS=Vitis...    77   3e-13
tr|A5BFU1|A5BFU1_VITVI Putative uncharacterized protein OS=Vitis...    77   4e-13
tr|A5AS37|A5AS37_VITVI Putative uncharacterized protein OS=Vitis...    77   4e-13
tr|A5AK46|A5AK46_VITVI Putative uncharacterized protein OS=Vitis...    77   4e-13
tr|A5AJ06|A5AJ06_VITVI Putative uncharacterized protein OS=Vitis...    77   4e-13

>tr|Q9ZRJ0|Q9ZRJ0_TOBAC Retrotransposon Tto1 DNA OS=Nicotiana
           tabacum PE=4 SV=1
          Length = 1338

 Score = 80.9 bits (198), Expect = 3e-14
 Identities = 35/54 (64%), Positives = 47/54 (87%)
 Frame = +1

Query: 10  GEPESYEEAMQHESKEEWTKSMQVEMDSLHRNQTWELVELPKGKRALQNKWVYK 171
           GEP+S+EEA+  E KE+W ++MQ E+ SLH N+T+ELV+LPKGKRAL+NKWV+K
Sbjct: 810 GEPDSFEEAIDDEHKEKWIEAMQDEIKSLHENKTFELVKLPKGKRALKNKWVFK 863


>tr|A5C540|A5C540_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_024474 PE=4 SV=1
          Length = 1207

 Score = 80.9 bits (198), Expect = 3e-14
 Identities = 35/54 (64%), Positives = 46/54 (85%)
 Frame = +1

Query: 10  GEPESYEEAMQHESKEEWTKSMQVEMDSLHRNQTWELVELPKGKRALQNKWVYK 171
           GEPESY EAM+ E+K +W  +MQ EM+SLH N ++ELV+LPKGKRAL+N+WVY+
Sbjct: 708 GEPESYVEAMEDENKMKWVDAMQDEMESLHENHSFELVKLPKGKRALKNRWVYR 761


>tr|A5AIP8|A5AIP8_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_008453 PE=4 SV=1
          Length = 903

 Score = 80.9 bits (198), Expect = 3e-14
 Identities = 36/54 (66%), Positives = 45/54 (83%)
 Frame = +1

Query: 10  GEPESYEEAMQHESKEEWTKSMQVEMDSLHRNQTWELVELPKGKRALQNKWVYK 171
           GEPESY+EAM  E+K +W  +MQ EM SLH N ++ELVELPKGKRAL+N+WVY+
Sbjct: 555 GEPESYKEAMGDENKIKWVDAMQDEMKSLHENHSYELVELPKGKRALKNRWVYR 608


>tr|A5C9D7|A5C9D7_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_007304 PE=4 SV=1
          Length = 1362

 Score = 79.0 bits (193), Expect = 1e-13
 Identities = 34/54 (62%), Positives = 46/54 (85%)
 Frame = +1

Query: 10  GEPESYEEAMQHESKEEWTKSMQVEMDSLHRNQTWELVELPKGKRALQNKWVYK 171
           GEPESY EAM+ E+K +W  +M+ EM+SLH N ++ELV+LPKGKRAL+N+WVY+
Sbjct: 805 GEPESYVEAMKDENKMKWVDAMRDEMESLHENHSFELVKLPKGKRALKNRWVYR 858


>tr|A5C2E5|A5C2E5_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_029099 PE=4 SV=1
          Length = 649

 Score = 79.0 bits (193), Expect = 1e-13
 Identities = 34/54 (62%), Positives = 45/54 (83%)
 Frame = +1

Query: 10  GEPESYEEAMQHESKEEWTKSMQVEMDSLHRNQTWELVELPKGKRALQNKWVYK 171
           GEPESYEEAM  E+K +W  +MQ EM SLH N+ +EL++LPKGK+AL+N+WVY+
Sbjct: 594 GEPESYEEAMGDENKMKWVNAMQDEMKSLHENRFFELIKLPKGKKALKNRWVYR 647


>tr|A5BVV6|A5BVV6_VITVI Putative uncharacterized protein (Fragment)
           OS=Vitis vinifera GN=VITISV_036278 PE=4 SV=1
          Length = 973

 Score = 79.0 bits (193), Expect = 1e-13
 Identities = 35/54 (64%), Positives = 45/54 (83%)
 Frame = +1

Query: 10  GEPESYEEAMQHESKEEWTKSMQVEMDSLHRNQTWELVELPKGKRALQNKWVYK 171
           GEPESYEEAM  E+K +W  +MQ EM SLH N ++ELV+LPKGK+AL+N+WVY+
Sbjct: 617 GEPESYEEAMGVENKMKWVDAMQDEMKSLHENHSFELVKLPKGKKALKNRWVYR 670


>tr|A5BD56|A5BD56_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_028342 PE=4 SV=1
          Length = 1252

 Score = 79.0 bits (193), Expect = 1e-13
 Identities = 34/54 (62%), Positives = 43/54 (79%)
 Frame = +1

Query: 10  GEPESYEEAMQHESKEEWTKSMQVEMDSLHRNQTWELVELPKGKRALQNKWVYK 171
           GEPE Y+EA+Q E+  +W  +M+ EMDSL  NQTWEL+ELP GK+AL NKWVY+
Sbjct: 553 GEPECYDEALQDENSSKWELTMKDEMDSLLGNQTWELIELPVGKKALHNKWVYR 606


>tr|A5B377|A5B377_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_037906 PE=4 SV=1
          Length = 1148

 Score = 79.0 bits (193), Expect = 1e-13
 Identities = 34/54 (62%), Positives = 43/54 (79%)
 Frame = +1

Query: 10  GEPESYEEAMQHESKEEWTKSMQVEMDSLHRNQTWELVELPKGKRALQNKWVYK 171
           GEPE Y+EA+Q E+  +W  +M+ EMDSL  NQTWEL+ELP GK+AL NKWVY+
Sbjct: 722 GEPECYDEALQDENSSKWELAMKDEMDSLLGNQTWELIELPVGKKALHNKWVYR 775


>tr|A5CA02|A5CA02_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_011062 PE=4 SV=1
          Length = 646

 Score = 78.6 bits (192), Expect = 1e-13
 Identities = 35/54 (64%), Positives = 41/54 (75%)
 Frame = +1

Query: 10  GEPESYEEAMQHESKEEWTKSMQVEMDSLHRNQTWELVELPKGKRALQNKWVYK 171
           GEPE Y+EA+Q E+  +W  +M  EMDSL  NQTWEL ELP GK+AL NKWVYK
Sbjct: 222 GEPECYDEALQDENSSKWELAMNDEMDSLLGNQTWELTELPVGKKALHNKWVYK 275


>tr|A5BA77|A5BA77_VITVI Putative uncharacterized protein (Fragment)
           OS=Vitis vinifera GN=VITISV_006540 PE=4 SV=1
          Length = 1061

 Score = 78.6 bits (192), Expect = 1e-13
 Identities = 35/54 (64%), Positives = 42/54 (77%)
 Frame = +1

Query: 10  GEPESYEEAMQHESKEEWTKSMQVEMDSLHRNQTWELVELPKGKRALQNKWVYK 171
           GEPE Y+EA+Q E+  +W  SM+ EMDSL  NQTWEL ELP GK+AL NKWVY+
Sbjct: 460 GEPECYDEALQDENSSKWELSMKDEMDSLLGNQTWELTELPIGKKALHNKWVYR 513