BP911597 |
Clone id |
YMU001_000006_H04 |
Library |
YMU01 |
Length |
171 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000006_H04. |
Accession |
BP911597 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
- |
Sequence |
CAGGTACTCGGAGAGCCGGAATCATATGAAGAAGCTATGCAACATGAATCCAAAGAAGAA TGGACGAAGAGCATGCAAGTGGAGATGGACTCACTACATCGCAACCAAACATGGGAGTTG GTTGAGTTGCCTAAAGGTAAGCGGGCACTTCAAAACAAATGGGTGTACAAG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P10978 |
Definition |
sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum |
Align length |
53 |
Score (bit) |
66.6 |
E-value |
4.0e-11 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP911597|Adiantum capillus-veneris mRNA, clone: YMU001_000006_H04. (171 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from tra... 67 4e-11 sp|P92520|M820_ARATH Uncharacterized mitochondrial protein AtMg0... 43 6e-04 sp|P04146|COPIA_DROME Copia protein OS=Drosophila melanogaster G... 42 0.001 sp|Q8BZL1|NEUR4_MOUSE Sialidase-4 OS=Mus musculus GN=Neu4 PE=2 SV=2 30 2.9 sp|O88387|FGD4_RAT FYVE, RhoGEF and PH domain-containing protein... 30 2.9 sp|Q91ZT5|FGD4_MOUSE FYVE, RhoGEF and PH domain-containing prote... 30 3.7 sp|Q5QJ38|TCHL1_HUMAN Trichohyalin-like protein 1 OS=Homo sapien... 30 4.9 sp|Q96M96|FGD4_HUMAN FYVE, RhoGEF and PH domain-containing prote... 29 6.4 sp|P38213|YBL7_YEAST Uncharacterized protein YBR007C OS=Saccharo... 29 8.3 sp|Q6HDK6|GRPE_BACHK Protein grpE OS=Bacillus thuringiensis subs... 29 8.3 sp|Q634M6|GRPE_BACCZ Protein grpE OS=Bacillus cereus (strain ZK ... 29 8.3 sp|Q818E8|GRPE_BACCR Protein grpE OS=Bacillus cereus (strain ATC... 29 8.3 sp|Q81LS1|GRPE_BACAN Protein grpE OS=Bacillus anthracis GN=grpE ... 29 8.3
>sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1 Length = 1328
Score = 66.6 bits (161), Expect = 4e-11 Identities = 30/53 (56%), Positives = 40/53 (75%) Frame = +1
Query: 13 EPESYEEAMQHESKEEWTKSMQVEMDSLHRNQTWELVELPKGKRALQNKWVYK 171 EPES +E + H K + K+MQ EM+SL +N T++LVELPKGKR L+ KWV+K Sbjct: 810 EPESLKEVLSHPEKNQLMKAMQEEMESLQKNGTYKLVELPKGKRPLKCKWVFK 862
>sp|P92520|M820_ARATH Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana GN=AtMg00820 PE=4 SV=1 Length = 170
Score = 42.7 bits (99), Expect = 6e-04 Identities = 22/53 (41%), Positives = 32/53 (60%) Frame = +1
Query: 13 EPESYEEAMQHESKEEWTKSMQVEMDSLHRNQTWELVELPKGKRALQNKWVYK 171 EP+S A++ W ++MQ E+D+L RN+TW LV P + L KWV+K Sbjct: 27 EPKSVIFALKDPG---WCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFK 76
>sp|P04146|COPIA_DROME Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3 Length = 1409
Score = 42.0 bits (97), Expect = 0.001 Identities = 13/51 (25%), Positives = 29/51 (56%) Frame = +1
Query: 16 PESYEEAMQHESKEEWTKSMQVEMDSLHRNQTWELVELPKGKRALQNKWVY 168 P S++E + K W +++ E+++ N TW + + P+ K + ++WV+ Sbjct: 891 PNSFDEIQYRDDKSSWEEAINTELNAHKINNTWTITKRPENKNIVDSRWVF 941
>sp|Q8BZL1|NEUR4_MOUSE Sialidase-4 OS=Mus musculus GN=Neu4 PE=2 SV=2 Length = 501
Score = 30.4 bits (67), Expect = 2.9 Identities = 13/39 (33%), Positives = 20/39 (51%) Frame = +1
Query: 52 KEEWTKSMQVEMDSLHRNQTWELVELPKGKRALQNKWVY 168 K WT + DS+ ++ TW L P G+RA + +Y Sbjct: 374 KTSWTPECPMSSDSMLQSPTWLLYSHPAGRRARLHMGIY 412
>sp|O88387|FGD4_RAT FYVE, RhoGEF and PH domain-containing protein 4 OS=Rattus norvegicus GN=Fgd4 PE=1 SV=1 Length = 766
Score = 30.4 bits (67), Expect = 2.9 Identities = 15/40 (37%), Positives = 26/40 (65%), Gaps = 2/40 (5%) Frame = +1
Query: 1 QVLGEPESYE-EAMQHESKEEWTKSMQVEMDSLH-RNQTW 114 QV G+ + E +A + KEEW K++Q +D+ H R++T+ Sbjct: 491 QVSGKERTLELQASSEQDKEEWIKALQESIDAFHQRHETF 530
>sp|Q91ZT5|FGD4_MOUSE FYVE, RhoGEF and PH domain-containing protein 4 OS=Mus musculus GN=Fgd4 PE=2 SV=1 Length = 766
Score = 30.0 bits (66), Expect = 3.7 Identities = 14/40 (35%), Positives = 26/40 (65%), Gaps = 2/40 (5%) Frame = +1
Query: 1 QVLGEPESYE-EAMQHESKEEWTKSMQVEMDSLH-RNQTW 114 Q+ G+ + E +A + KEEW K++Q +D+ H R++T+ Sbjct: 491 QISGKERTLELQASSEQDKEEWIKALQESIDAFHQRHETF 530
>sp|Q5QJ38|TCHL1_HUMAN Trichohyalin-like protein 1 OS=Homo sapiens GN=TCHHL1 PE=2 SV=1 Length = 904
Score = 29.6 bits (65), Expect = 4.9 Identities = 15/46 (32%), Positives = 26/46 (56%) Frame = +1
Query: 7 LGEPESYEEAMQHESKEEWTKSMQVEMDSLHRNQTWELVELPKGKR 144 LGEPE Y + + KE TK + V+ S + ++T ++ + K +R Sbjct: 350 LGEPEDYGRTSETQEKECETKDLPVQYGSRNGSETSDMRDERKERR 395
>sp|Q96M96|FGD4_HUMAN FYVE, RhoGEF and PH domain-containing protein 4 OS=Homo sapiens GN=FGD4 PE=1 SV=2 Length = 766
Score = 29.3 bits (64), Expect = 6.4 Identities = 15/40 (37%), Positives = 26/40 (65%), Gaps = 2/40 (5%) Frame = +1
Query: 1 QVLGEPESYE-EAMQHESKEEWTKSMQVEMDSLH-RNQTW 114 QV G+ + E +A + KEEW K++Q +D+ H R++T+ Sbjct: 491 QVSGKERTLELQASSAQDKEEWIKALQETIDAFHQRHETF 530
>sp|P38213|YBL7_YEAST Uncharacterized protein YBR007C OS=Saccharomyces cerevisiae GN=YBR007C PE=1 SV=1 Length = 736
Score = 28.9 bits (63), Expect = 8.3 Identities = 12/37 (32%), Positives = 18/37 (48%) Frame = +1
Query: 61 WTKSMQVEMDSLHRNQTWELVELPKGKRALQNKWVYK 171 W+K+ V+ L R W + KG L + W+YK Sbjct: 691 WSKTSNVKKRDLARAAAWFRIADKKGANLLGSDWIYK 727
>sp|Q6HDK6|GRPE_BACHK Protein grpE OS=Bacillus thuringiensis subsp. konkukian GN=grpE PE=3 SV=1 Length = 188
Score = 28.9 bits (63), Expect = 8.3 Identities = 13/33 (39%), Positives = 22/33 (66%) Frame = +1
Query: 4 VLGEPESYEEAMQHESKEEWTKSMQVEMDSLHR 102 +L +++E AMQ E+ +E TKS+ M+ +HR Sbjct: 90 ILPALDNFERAMQVEATDEQTKSLLQGMEMVHR 122
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q9ZRJ0 |
Definition |
tr|Q9ZRJ0|Q9ZRJ0_TOBAC Retrotransposon Tto1 DNA OS=Nicotiana tabacum |
Align length |
54 |
Score (bit) |
80.9 |
E-value |
3.0e-14 |
Report |
|