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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP911600
Clone id YMU001_000006_H08
Library
Length 452
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000006_H08.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CGGAGGAATCATGAAAAGTGACAGGTTTGGAAGCCTTTCCCTGAAGAGCTGTAGTCTCAT
TTGAAGATAATTTTGCCAACGGATTTGTGGCACCATCAACCTATGCACAGTTTTCTCCTT
TGTATCCACTACCTGTATACGACTACACTCAGAGAAGATGCTCAAAATATTTTCTGCAAC
AAGATTTGCAGCTGCTTAGTTCTGGAAAGACCATTAAATACCTCTGACGGGGCCCTCCCC
CAAGTTTGCAATGTAAAAGTAACAACCTTGCAGACAATGGCACTGGCTATCAGAGAGAGA
GAGAGAGAGAGACCTCTTTACTGATTCTTTCGGCTCACATGGCACGGATTGAGAAATGCA
TACGGGCTCAGAAAACCTCCACATCAACACTACCTTTCTCTGGAAAGGCAGTGTCTATAA
TGTAGCCAATAGCCTCAAATGCTATGAGAACA
■■Homology search results ■■ -
sp_hit_id P57510
Definition sp|P57510|YGFZ_BUCAI tRNA-modifying protein ygfZ OS=Buchnera aphidicola subsp. Acyrthosiphon pisum
Align length 63
Score (bit) 32.3
E-value 0.97
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911600|Adiantum capillus-veneris mRNA, clone:
YMU001_000006_H08.
         (452 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P57510|YGFZ_BUCAI tRNA-modifying protein ygfZ OS=Buchnera aph...    32   0.97 
sp|Q9QW30|NOTC2_RAT Neurogenic locus notch homolog protein 2 OS=...    31   2.8  
sp|Q6HHY7|Y2513_BACHK UPF0421 protein BT9727_2513 OS=Bacillus th...    29   8.2  
sp|Q63AK0|Y2478_BACCZ UPF0421 protein BCE33L2478 OS=Bacillus cer...    29   8.2  
sp|Q95ZG3|SPC97_DICDI Spindle pole body component 97 OS=Dictyost...    29   8.2  
sp|A0B632|SEPS_METTP O-phosphoseryl-tRNA(Cys) synthetase OS=Meth...    29   8.2  

>sp|P57510|YGFZ_BUCAI tRNA-modifying protein ygfZ OS=Buchnera
           aphidicola subsp. Acyrthosiphon pisum GN=BU435 PE=3 SV=1
          Length = 319

 Score = 32.3 bits (72), Expect = 0.97
 Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
 Frame = +1

Query: 79  TDLWHHQPMHSFLLCIHYL-YTTTLREDAQNIFCNKICSCLVLERPLNTSDGALPQVCNV 255
           T LW+ +P   FLL + +L + T  R+  QNIF N     L+L+  +      + ++C+ 
Sbjct: 150 TILWYEKPSERFLLVLPFLDFLTLKRKINQNIFLNNSKQWLLLD--IEAGLPVIDKICSN 207

Query: 256 KVT 264
           K T
Sbjct: 208 KFT 210


>sp|Q9QW30|NOTC2_RAT Neurogenic locus notch homolog protein 2
           OS=Rattus norvegicus GN=Notch2 PE=1 SV=1
          Length = 2471

 Score = 30.8 bits (68), Expect = 2.8
 Identities = 16/40 (40%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
 Frame = -3

Query: 378 RFSEPVCISQSVPCEPKESVKRSLSLSLSD--SQCHCLQG 265
           RF+   C S  VPC P   V         D  S+CHCL G
Sbjct: 212 RFTGQHCDSPYVPCAPSPCVNGGTCRQTGDFTSECHCLPG 251


>sp|Q6HHY7|Y2513_BACHK UPF0421 protein BT9727_2513 OS=Bacillus
           thuringiensis subsp. konkukian GN=BT9727_2513 PE=3 SV=1
          Length = 358

 Score = 29.3 bits (64), Expect = 8.2
 Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
 Frame = -3

Query: 330 KESVKRSLSLSLSDSQCHCLQGCYFYIANLGEGPVRGI*WSFQN*AAANLVAENILSIF- 154
           + + K   S  L   Q H LQ   ++I NL   P+    WS            +I+SI  
Sbjct: 218 RHTKKEMRSFLLVQKQLHLLQQIIYHIDNLARAPIETCDWSQNEKEILRRTIHSIISILR 277

Query: 153 SECSRI 136
           + C +I
Sbjct: 278 NHCEKI 283


>sp|Q63AK0|Y2478_BACCZ UPF0421 protein BCE33L2478 OS=Bacillus cereus
           (strain ZK / E33L) GN=BCE33L2478 PE=3 SV=1
          Length = 355

 Score = 29.3 bits (64), Expect = 8.2
 Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
 Frame = -3

Query: 330 KESVKRSLSLSLSDSQCHCLQGCYFYIANLGEGPVRGI*WSFQN*AAANLVAENILSIF- 154
           + + K   S  L   Q H LQ   ++I NL   P+    WS            +I+SI  
Sbjct: 218 RHTKKEMRSFLLVQKQLHLLQQIIYHIDNLARAPIETCDWSQNEKEILRRTIHSIISILR 277

Query: 153 SECSRI 136
           + C +I
Sbjct: 278 NHCEKI 283


>sp|Q95ZG3|SPC97_DICDI Spindle pole body component 97
           OS=Dictyostelium discoideum GN=spc97 PE=2 SV=2
          Length = 1335

 Score = 29.3 bits (64), Expect = 8.2
 Identities = 22/97 (22%), Positives = 42/97 (43%), Gaps = 2/97 (2%)
 Frame = +3

Query: 111 FSPLYPLPVYDYTQRRCSKYFLQQDLQLLSSGKTIKYL*RGPPPSLQCKSNNLADNGTGY 290
           F+ LY    Y   Q +  KY     L++L++GK +  +        Q + +N +DN    
Sbjct: 641 FNDLYWEQRYQIRQDQIPKYLQSHALKILTTGKYLNVVRECNQSISQQQQHNKSDNNNNN 700

Query: 291 QR--ERERETSLLILSAHMARIEKCIRAQKTSTSTLP 395
               +   +  LL+L  +  + ++  +   TS S +P
Sbjct: 701 NNNVKLNSQQQLLLLKLNTTQQQQQQQLSSTSASMIP 737


>sp|A0B632|SEPS_METTP O-phosphoseryl-tRNA(Cys) synthetase
           OS=Methanosaeta thermophila (strain DSM 6194 / PT)
           GN=sepS PE=3 SV=1
          Length = 545

 Score = 29.3 bits (64), Expect = 8.2
 Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
 Frame = +1

Query: 31  KPFPEEL*SHLK---IILPTDLWHHQPMHSFLLCIHYLYTTTLREDAQNIFCNKICSCLV 201
           +P    L SH+     I  ++LW+  P+   L  +   +     EDA  +      SC+V
Sbjct: 180 EPTSRTLRSHMTSGWFISLSNLWYRMPLPVRLFSVDRCFRREQSEDAARLMSYHSASCVV 239

Query: 202 LERPLNTSDG 231
           ++  ++  +G
Sbjct: 240 MDEDMSVDEG 249
tr_hit_id A7SWX2
Definition tr|A7SWX2|A7SWX2_NEMVE Predicted protein OS=Nematostella vectensis
Align length 91
Score (bit) 33.9
E-value 4.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911600|Adiantum capillus-veneris mRNA, clone:
YMU001_000006_H08.
         (452 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7SWX2|A7SWX2_NEMVE Predicted protein OS=Nematostella vectens...    34   4.2  
tr|A5WHD4|A5WHD4_PSYWF 5'-nucleotidase OS=Psychrobacter sp. (str...    33   9.3  
tr|Q4PFS0|Q4PFS0_USTMA Putative uncharacterized protein OS=Ustil...    33   9.3  

>tr|A7SWX2|A7SWX2_NEMVE Predicted protein OS=Nematostella vectensis
           GN=v1g135947 PE=4 SV=1
          Length = 634

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 8/91 (8%)
 Frame = +3

Query: 114 SPLYP-LPVYDYTQRRCSKYFLQQDLQLLSSGKTIKYL*RGPPPSLQCKSNNLADNGTGY 290
           SPLY  L   D  Q +C+   +    ++L+ GK +K    G P SL+ K+N L  +   Y
Sbjct: 516 SPLYSELIKQDVPQLKCANCRMALAGEILTDGKLVKCEKCGVPQSLEDKANLLRKSEVEY 575

Query: 291 QR-------ERERETSLLILSAHMARIEKCI 362
                    E +  ++L  L  H+  +E+C+
Sbjct: 576 NEAMTKLLGEADVSSALPRLEGHLRVLEECV 606


>tr|A5WHD4|A5WHD4_PSYWF 5'-nucleotidase OS=Psychrobacter sp. (strain
           PRwf-1) GN=PsycPRwf_2135 PE=4 SV=1
          Length = 335

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 15/31 (48%), Positives = 23/31 (74%), Gaps = 1/31 (3%)
 Frame = +1

Query: 133 LYTTTLREDAQNIFCNKICSCLVLE-RPLNT 222
           L+ TT REDAQ++   +IC+C +L+  P+NT
Sbjct: 142 LFLTTNREDAQSVADAQICACAILDATPVNT 172


>tr|Q4PFS0|Q4PFS0_USTMA Putative uncharacterized protein OS=Ustilago
           maydis GN=UM01043.1 PE=4 SV=1
          Length = 1097

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 16/50 (32%), Positives = 27/50 (54%)
 Frame = +3

Query: 246 LQCKSNNLADNGTGYQRERERETSLLILSAHMARIEKCIRAQKTSTSTLP 395
           + C  N  + + +G+QR R   T L  ++AH +R  +  RA+K +   LP
Sbjct: 1   MHCSPNTYSLSASGWQRRRLYATDLYRIAAHFSRAAQFKRAKKINDLQLP 50