BP911610
Clone id YMU001_000007_A09
Library
Length 526
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000007_A09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
CATGTATCTGCATCAGGAATTGTGTATTAGCTGGAGACTGATGGCATAGGTCGTGCTTTC
ATGATATTGGCTCTTTCGTCTATACCATTTTTGTCTTCTTGATTTCGTGGTTTGGAAAGT
CAAAAAACTTTTCCTCCCCTCCCTTTAAGAGTAACTGAGCTCTCATATGCTCTTTTTCTG
ACCCCGAGTCTTCTGAGGTAGCTGAGTGTTCATCTAACTCATGAGTTGCATAGTAATAGA
GTTCTGAAAAGACTTGTTGAGCTTTCATCAAGTCCTTGGGTTCCTCATTTTCGTTTTCAA
TATTGAATACTGACATCATTTCGATGGGAATTATATCGTAGCCATCCTCATTGCATAATT
GAGTAGGCATAGACATATTCACACATACATCCATTGTCGCTAAAATTTGAGTCCACTTGA
ATGGCTCAAATAAATGCTCTAGAAAGGGTTTTGGTACGTAGGCTTCGTCTGCGCAATCTC
TTCTGCTTGTCTTAAGCTTACATTTTCTGAAGCTCCACACATCCAA
■■Homology search results ■■ -
sp_hit_id Q97WH0
Definition sp|Q97WH0|RAD50_SULSO DNA double-strand break repair rad50 ATPase OS=Sulfolobus solfataricus
Align length 93
Score (bit) 32.7
E-value 1.1
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP911610|Adiantum capillus-veneris mRNA, clone:
YMU001_000007_A09.
(526 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q97WH0|RAD50_SULSO DNA double-strand break repair rad50 ATPas... 33 1.1
sp|Q3YK19|FANCJ_CHICK Fanconi anemia group J protein homolog OS=... 32 2.4
sp|Q9SGQ6|PP126_ARATH Pentatricopeptide repeat-containing protei... 31 3.2
sp|Q1MQY8|IF2_LAWIP Translation initiation factor IF-2 OS=Lawson... 31 4.1
sp|Q03661|ESC1_YEAST Silent chromatin protein ESC1 OS=Saccharomy... 31 4.1
sp|Q60301|Y3402_METJA Uncharacterized adenine-specific methylase... 30 7.1
sp|Q2LWU6|IF2_SYNAS Translation initiation factor IF-2 OS=Syntro... 30 7.1
sp|Q8AV28|PCM1_CHICK Pericentriolar material 1 protein OS=Gallus... 30 9.2
sp|Q27571|NOS_DROME Nitric oxide synthase OS=Drosophila melanoga... 30 9.2

>sp|Q97WH0|RAD50_SULSO DNA double-strand break repair rad50 ATPase
OS=Sulfolobus solfataricus GN=rad50 PE=3 SV=1
Length = 864

Score = 32.7 bits (73), Expect = 1.1
Identities = 27/93 (29%), Positives = 41/93 (44%), Gaps = 14/93 (15%)
Frame = -1

Query: 322 EMMSVFNIENE----NEEPKDLMKAQQVFSELYYYATHELDEHSATSEDSGSEKEHMRAQ 155
E+ S+ NI+ E NEE K+L + F L Y ELD+ ++ +KE + +
Sbjct: 507 EIESLKNIDEEIKKINEEVKELKLYYEEFMRLSKYTKEELDKKRVKLDEMKKKKEEIEKE 566

Query: 154 LL-----LKG-----GEEKFFDFPNHEIKKTKM 86
+ LKG E K D N +K +M
Sbjct: 567 MRGLESELKGLDRKALESKILDLENKRVKLDEM 599


>sp|Q3YK19|FANCJ_CHICK Fanconi anemia group J protein homolog
OS=Gallus gallus GN=BRIP1 PE=2 SV=1
Length = 1252

Score = 31.6 bits (70), Expect = 2.4
Identities = 26/103 (25%), Positives = 44/103 (42%)
Frame = -1

Query: 508 RKCKLKTSRRDCADEAYVPKPFLEHLFEPFKWTQILATMDVCVNMSMPTQLCNEDGYDII 329
RK T ++ D+ ++PK F + QI + +P + + Y I
Sbjct: 235 RKDSGNTKKKANGDQTFIPKIFFGTRTHK-QIAQITRELKRTAYSGVPMTILSSRDYTCI 293

Query: 328 PIEMMSVFNIENENEEPKDLMKAQQVFSELYYYATHELDEHSA 200
+ S + N NE +L++ + S LYY+ H+L EH A
Sbjct: 294 HPVVSS--SNSNRNELCVELLEGKHGKSCLYYHGVHKLSEHYA 334


>sp|Q9SGQ6|PP126_ARATH Pentatricopeptide repeat-containing protein
At1g76280 OS=Arabidopsis thaliana GN=At1g76280 PE=2 SV=2
Length = 773

Score = 31.2 bits (69), Expect = 3.2
Identities = 17/67 (25%), Positives = 34/67 (50%)
Frame = -1

Query: 349 EDGYDIIPIEMMSVFNIENENEEPKDLMKAQQVFSELYYYATHELDEHSATSEDSGSEKE 170
E GY IE ++V ++ NEE K+ ++ +++ E + + + + + E +E
Sbjct: 677 EKGYHATAIEALNVLSLRMLNEEDKESLQDKKIELEENFVMSEDPEAETKIIELFRKSEE 736

Query: 169 HMRAQLL 149
H+ A LL
Sbjct: 737 HLAAALL 743


>sp|Q1MQY8|IF2_LAWIP Translation initiation factor IF-2 OS=Lawsonia
intracellularis (strain PHE/MN1-00) GN=infB PE=3 SV=1
Length = 961

Score = 30.8 bits (68), Expect = 4.1
Identities = 26/109 (23%), Positives = 49/109 (44%), Gaps = 8/109 (7%)
Frame = -1

Query: 406 ILATMDVCVNMSMPTQLCNEDGYDIIPI----EMMSVFNIENENEEPKDLMKAQQVFSEL 239
++AT+++ +++ T + E GY++ I E V ++E K + +
Sbjct: 412 VMATINMSLDIDTATLVAAEFGYEVEKIGFTEEDYLVATAPEQSESLKRRPPVVTIMGHV 471

Query: 238 YYYATHELD---EHSATSEDSGSEKEHMRA-QLLLKGGEEKFFDFPNHE 104
+ T LD + + T ++G +H+ A + K GE F D P HE
Sbjct: 472 DHGKTSLLDAIRKTNVTGGEAGGITQHIGAYHVTTKSGEIVFLDTPGHE 520


>sp|Q03661|ESC1_YEAST Silent chromatin protein ESC1 OS=Saccharomyces
cerevisiae GN=ESC1 PE=1 SV=1
Length = 1658

Score = 30.8 bits (68), Expect = 4.1
Identities = 15/61 (24%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Frame = -1

Query: 304 NIENENEEPKDLMKAQQVFSE-LYYYATHELDEHSATSEDSGSEKEHMRAQLLLKGGEEK 128
++++E+E+ + ++ +E +Y++ HELD+ + S+ E AQ +G E+
Sbjct: 364 SVDDESEDEESQAESYSANAENVYHHNEHELDDKELIEDIESSDSESQSAQESEQGSEDD 423

Query: 127 F 125
F
Sbjct: 424 F 424


>sp|Q60301|Y3402_METJA Uncharacterized adenine-specific methylase
MJECS02 OS=Methanocaldococcus jannaschii GN=MJECS02 PE=3
SV=1
Length = 1181

Score = 30.0 bits (66), Expect = 7.1
Identities = 28/109 (25%), Positives = 52/109 (47%), Gaps = 5/109 (4%)
Frame = -1

Query: 325 IEMMSVFNIENENEEPKDL-MKAQQVFSELYY-YATHELDEHSATSEDSGSEKEHMRAQL 152
+ + S+F EN++ KDL + +QVFSE YY ++ ++E+ + + K+
Sbjct: 176 LNLKSIFEYVLENKKDKDLENELKQVFSEFYYCFSKEYIEEYIEVATKNIKHKKEEITNE 235

Query: 151 LLKGGEEKFFDFPN-HEIKKTKMV*TKEPIS*KHDL--CHQSPANTQFL 14
K + F F + ++KK +++ K L C ++P NT L
Sbjct: 236 FYKEFVKLVFGFEDVKDVKKKDKSSSEKDKGTKKCLYNCIEAPPNTSEL 284


>sp|Q2LWU6|IF2_SYNAS Translation initiation factor IF-2
OS=Syntrophus aciditrophicus (strain SB) GN=infB PE=3
SV=2
Length = 919

Score = 30.0 bits (66), Expect = 7.1
Identities = 26/108 (24%), Positives = 48/108 (44%), Gaps = 7/108 (6%)
Frame = -1

Query: 406 ILATMDVCVNMSMPTQLCNEDGYDIIPIEMM---SVFNIENENEEPKDLMKAQQVFSELY 236
++AT++ ++ + + E Y + P M S+F +E+ E K + +
Sbjct: 373 LMATINQSIDFDAASLIATEFEYQVEPAGMEYDESMFKVESSVENLKPRAPVVTIMGHVD 432

Query: 235 YYATHELD---EHSATSEDSGSEKEHMRA-QLLLKGGEEKFFDFPNHE 104
+ T LD + T ++G + + A ++ LKG E F D P HE
Sbjct: 433 HGKTSLLDAIRKTRVTEGEAGGITQAIGAYRVNLKGREIVFLDTPGHE 480


>sp|Q8AV28|PCM1_CHICK Pericentriolar material 1 protein OS=Gallus
gallus GN=PCM1 PE=2 SV=1
Length = 1904

Score = 29.6 bits (65), Expect = 9.2
Identities = 18/70 (25%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Frame = -1

Query: 373 SMPTQLCNEDGYDIIPIEMMSVFN-IENENEEPKDLMKAQQVFSELYYYATHELDEHSAT 197
S+ +Q +E+ ++ P E + N + E ++L+ + S++ A +E +
Sbjct: 387 SLASQNESEEDDNLNPTEKLQKLNEVRKRLNELRELVHYYEQTSDMMTDAVNENTKEEEE 446

Query: 196 SEDSGSEKEH 167
+EDSGS+ EH
Sbjct: 447 TEDSGSDSEH 456


>sp|Q27571|NOS_DROME Nitric oxide synthase OS=Drosophila
melanogaster GN=Nos PE=1 SV=3
Length = 1349

Score = 29.6 bits (65), Expect = 9.2
Identities = 24/88 (27%), Positives = 36/88 (40%), Gaps = 1/88 (1%)
Frame = -1

Query: 355 CNEDGYDIIPIEMMSVFNIENENEEPKDLMKAQQVFS-ELYYYATHELDEHSATSEDSGS 179
C D YDI IE ++ + D + ++FS ELY E EH GS
Sbjct: 703 CMSD-YDISSIEHEALLIVVASTFGNGDPPENGELFSQELYAMRVQESSEHGLQDSSIGS 761

Query: 178 EKEHMRAQLLLKGGEEKFFDFPNHEIKK 95
K M+A ++F P ++K+
Sbjct: 762 SKSFMKA-----SSRQEFMKLPLQQVKR 784


tr_hit_id B6KHT4
Definition tr|B6KHT4|B6KHT4_TOXGO Putative uncharacterized protein OS=Toxoplasma gondii ME49
Align length 86
Score (bit) 38.5
E-value 0.21
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP911610|Adiantum capillus-veneris mRNA, clone:
YMU001_000007_A09.
(526 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|B6KHT4|B6KHT4_TOXGO Putative uncharacterized protein OS=Toxop... 39 0.21
tr|B6NWH1|B6NWH1_BRAFL Putative uncharacterized protein OS=Branc... 35 3.0
tr|B6NVI5|B6NVI5_BRAFL Putative uncharacterized protein OS=Branc... 35 3.0
tr|Q8D7Z7|Q8D7Z7_VIBVU Response regulator VieB OS=Vibrio vulnifi... 34 5.2
tr|Q9U7B0|Q9U7B0_MONMI 82 kD heat shock protein (Fragment) OS=Mo... 34 5.2
tr|B3QXN0|B3QXN0_CHLT3 Putative uncharacterized protein OS=Chlor... 33 8.8

>tr|B6KHT4|B6KHT4_TOXGO Putative uncharacterized protein
OS=Toxoplasma gondii ME49 GN=TGME49_051660 PE=4 SV=1
Length = 161

Score = 38.5 bits (88), Expect = 0.21
Identities = 25/86 (29%), Positives = 42/86 (48%)
Frame = -1

Query: 328 PIEMMSVFNIENENEEPKDLMKAQQVFSELYYYATHELDEHSATSEDSGSEKEHMRAQLL 149
P E+ VF E ++P++ +AQ+V T E +E E++ E+EH Q
Sbjct: 65 PDEVSGVFKKLPEADQPQEKAEAQEV--------TSEREEAEEAEEEAEEEEEHRSKQEA 116

Query: 148 LKGGEEKFFDFPNHEIKKTKMV*TKE 71
+G EE P H+++ KM+ +E
Sbjct: 117 SRGFEEA----PEHQVEDVKMIEAEE 138


>tr|B6NWH1|B6NWH1_BRAFL Putative uncharacterized protein
OS=Branchiostoma floridae GN=BRAFLDRAFT_129192 PE=4 SV=1
Length = 1253

Score = 34.7 bits (78), Expect = 3.0
Identities = 18/64 (28%), Positives = 31/64 (48%)
Frame = -1

Query: 301 IENENEEPKDLMKAQQVFSELYYYATHELDEHSATSEDSGSEKEHMRAQLLLKGGEEKFF 122
I N+E K+L K + H++++H+ S+D+ EHM + + KFF
Sbjct: 933 INERNKETKELEKEKNEAQLKIQELEHKVNKHNKDSKDAAKTVEHMLNKYEWIASDRKFF 992

Query: 121 DFPN 110
+ PN
Sbjct: 993 NQPN 996


>tr|B6NVI5|B6NVI5_BRAFL Putative uncharacterized protein
OS=Branchiostoma floridae GN=BRAFLDRAFT_129060 PE=4 SV=1
Length = 1229

Score = 34.7 bits (78), Expect = 3.0
Identities = 18/64 (28%), Positives = 31/64 (48%)
Frame = -1

Query: 301 IENENEEPKDLMKAQQVFSELYYYATHELDEHSATSEDSGSEKEHMRAQLLLKGGEEKFF 122
I N+E K+L K + H++++H+ S+D+ EHM + + KFF
Sbjct: 909 INERNKETKELEKEKNEAQLKIQELEHKVNKHNKDSKDAAKTVEHMLNKYEWIASDRKFF 968

Query: 121 DFPN 110
+ PN
Sbjct: 969 NQPN 972


>tr|Q8D7Z7|Q8D7Z7_VIBVU Response regulator VieB OS=Vibrio vulnificus
GN=VV1_3201 PE=4 SV=1
Length = 494

Score = 33.9 bits (76), Expect = 5.2
Identities = 22/81 (27%), Positives = 44/81 (54%), Gaps = 3/81 (3%)
Frame = -1

Query: 361 QLCNEDGYDIIPIEMMSVFNIENENEEPKDLMK--AQQVFSELYYYATHELDEHSATSED 188
QL E+ YD I + +V + +ENEE K++++ + + + LY+ E+ A D
Sbjct: 138 QLLKENSYDWIKTSLANVMILNDENEEAKNILEQVSDKKLNHLYH---DEMSNVKAYEND 194

Query: 187 SGSEKEHMR-AQLLLKGGEEK 128
+ +H++ A +LL+ G ++
Sbjct: 195 VPAAIKHLKVATMLLEAGLDR 215


>tr|Q9U7B0|Q9U7B0_MONMI 82 kD heat shock protein (Fragment)
OS=Moniliformis moniliformis GN=hsp82 PE=4 SV=1
Length = 290

Score = 33.9 bits (76), Expect = 5.2
Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 2/95 (2%)
Frame = -1

Query: 328 PIEMMSVFNIENENEEPKDLMKAQQVFSELYYYATHELD--EHSATSEDSGSEKEHMRAQ 155
PI+++ E E + +D K +++ E T ++D E + S+D EK+ + +
Sbjct: 193 PIKLVMQKEREKEVSDDEDEKKDEEMEVEKKEEDTEKVDVEEVADESDDENKEKDKKKKK 252

Query: 154 LLLKGGEEKFFDFPNHEIKKTKMV*TKEPIS*KHD 50
+ +EK+ D E+ KTK + T+ P KHD
Sbjct: 253 KI----KEKYID--EEELNKTKPIWTRNPEDIKHD 281


>tr|B3QXN0|B3QXN0_CHLT3 Putative uncharacterized protein
OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78)
GN=Ctha_2496 PE=3 SV=1
Length = 526

Score = 33.1 bits (74), Expect = 8.8
Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 1/92 (1%)
Frame = -1

Query: 304 NIENENEEPKDLMKAQQVFSELYYYATHELDEHSATSEDSGSEKEHMRAQLLLKGGEEKF 125
N+E+ ++ PK + A ++F+E++ H D H S + + +H LK E
Sbjct: 180 NLEHADDRPKVSIDASEIFAEVFPTTWHSFDNHFFLSSGNAT-YQHSNRTFALKNIEL-- 236

Query: 124 FDFPNHEIKKTKMV*TKEPIS*KH-DLCHQSP 32
PN E + K + IS K +LC +P
Sbjct: 237 --LPNQETLQNKYPIEEFHISLKSIELCETNP 266