BP911612
Clone id YMU001_000007_B01
Library
Length 556
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000007_B01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
TTGAGATATTACCTGCAGGTACTCTTAATAAGTAACCATTTTAGAAACAGAGTCGTTTAG
TTGAGATCCAACTGTGTTGTACATGCCTTAAATGGCTGGAACTTGTAAAATTACATAAAC
ACCTTGTGGCTGTGCCATGCAGCCAGTGAATGTCTGTGTGCCATATACTCATTGCACAGA
ACAACGAAGAGCAAGCCAAGAAGCTTACATACAAAAGAAATTACAAATAGGATGGTTGTA
TTCAGGAAATTAATGCAACACATTGTCGAACTCTCATAGGTACCTGAAGATGGGGACAGG
CTGCACTGCTTGATAATCCCACACTCCACAACCTGTCGGTTGAGGACAAAACATTTATAC
TCTCATCCGTGAGCATCTGACATCCACTGTTAGATTCTGAGATGATCCAACAATCTAGAT
CCTCACCATTCACTTCAAGCCTTCCAAGCTGATAGCTTATTATACATGCCTTTGTACAAC
CGCCGCGAGCACGCACACACACTCCGCTTCACCACATTAGTTGATCGGCTATTATGTCCT
CTCCAGCACAAAAATA
■■Homology search results ■■ -
sp_hit_id O57428
Definition sp|O57428|HASS_XENLA Hyaluronan synthase-related protein OS=Xenopus laevis
Align length 85
Score (bit) 32.7
E-value 1.2
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP911612|Adiantum capillus-veneris mRNA, clone:
YMU001_000007_B01.
(556 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|O57428|HASS_XENLA Hyaluronan synthase-related protein OS=Xeno... 33 1.2
sp|Q5E965|C56D2_BOVIN Cytochrome b561 domain-containing protein ... 30 7.9

>sp|O57428|HASS_XENLA Hyaluronan synthase-related protein OS=Xenopus
laevis GN=hasrs PE=2 SV=1
Length = 583

Score = 32.7 bits (73), Expect = 1.2
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Frame = -3

Query: 281 TYESSTMCCINFLNTTILFVISFVCKLLGLLFVVLCNEYMAHRHSL-AAWHSHKVFM*FY 105
TYES+T F T +L + + L ++++ LC + M+ SL A+W S K+ M
Sbjct: 397 TYESATGIFFPFFVTAVLIRLMYSSSLCNIVWLFLCIQIMSLLVSLYASWQSKKLSMVLM 456

Query: 104 KFQPFKACTTQLDLN*TTLFLKWLL 30
+TL++ WLL
Sbjct: 457 SLY-------------STLYIIWLL 468


>sp|Q5E965|C56D2_BOVIN Cytochrome b561 domain-containing protein 2
OS=Bos taurus GN=CYB561D2 PE=2 SV=1
Length = 222

Score = 30.0 bits (66), Expect = 7.9
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = -3

Query: 233 ILFVISFVCKLLGLLFVVLCNEYMAHRHSLAAWH 132
+L +++ +C LLGL V+L E + H LA WH
Sbjct: 88 VLQLLALLCALLGLGLVILHKEQLGKAH-LATWH 120


tr_hit_id A4CU39
Definition tr|A4CU39|A4CU39_SYNPV HAD-superfamily hydrolase subfamily IA, variant 3 OS=Synechococcus sp. (strain WH7805)
Align length 35
Score (bit) 36.2
E-value 1.2
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP911612|Adiantum capillus-veneris mRNA, clone:
YMU001_000007_B01.
(556 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A4CU39|A4CU39_SYNPV HAD-superfamily hydrolase subfamily IA, v... 36 1.2
tr|B0R0D8|B0R0D8_DANRE Novel protein (Fragment) OS=Danio rerio G... 35 2.7
tr|Q97001|Q97001_9HIV1 Envelope glycoprotein (Fragment) OS=Human... 33 7.9
tr|Q1M0M4|Q1M0M4_9HIV1 Envelope glycoprotein OS=Human immunodefi... 33 7.9
tr|A5GKK0|A5GKK0_SYNPW Predicted phosphatase/phosphohexomutase O... 33 7.9

>tr|A4CU39|A4CU39_SYNPV HAD-superfamily hydrolase subfamily IA,
variant 3 OS=Synechococcus sp. (strain WH7805)
GN=WH7805_01927 PE=4 SV=1
Length = 230

Score = 36.2 bits (82), Expect = 1.2
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = -1

Query: 454 YQLGRLEVNGEDLDCWIISESNSGCQMLTDESINV 350
Y+LG ++N DCW I +S++GCQ + NV
Sbjct: 160 YKLGASKLNVNPQDCWAIEDSDAGCQSAAEAGCNV 194


>tr|B0R0D8|B0R0D8_DANRE Novel protein (Fragment) OS=Danio rerio
GN=CH211-191D15.6-001 PE=4 SV=1
Length = 148

Score = 35.0 bits (79), Expect = 2.7
Identities = 14/46 (30%), Positives = 26/46 (56%)
Frame = -3

Query: 254 INFLNTTILFVISFVCKLLGLLFVVLCNEYMAHRHSLAAWHSHKVF 117
++FL +L +I L+ ++F+V C M+H+ L A++ K F
Sbjct: 76 VDFLKENLLLIIVVTALLVVIIFIVCCASAMSHKRKLEAYYPPKTF 121


>tr|Q97001|Q97001_9HIV1 Envelope glycoprotein (Fragment) OS=Human
immunodeficiency virus 1 GN=env PE=4 SV=1
Length = 839

Score = 33.5 bits (75), Expect = 7.9
Identities = 19/52 (36%), Positives = 25/52 (48%)
Frame = -1

Query: 418 LDCWIISESNSGCQMLTDESINVLSSTDRLWSVGLSSSAACPHLQVPMRVRQ 263
L CWI NS +L +I V TDR ++ L A L +P R+RQ
Sbjct: 783 LQCWIQELKNSAISLLDATAITVAEETDR--AIELVQRAVRAILHIPTRIRQ 832


>tr|Q1M0M4|Q1M0M4_9HIV1 Envelope glycoprotein OS=Human
immunodeficiency virus 1 GN=env PE=4 SV=1
Length = 852

Score = 33.5 bits (75), Expect = 7.9
Identities = 19/52 (36%), Positives = 26/52 (50%)
Frame = -1

Query: 418 LDCWIISESNSGCQMLTDESINVLSSTDRLWSVGLSSSAACPHLQVPMRVRQ 263
L WI NS +L ++ V TDR+ VGL + A H +P R+RQ
Sbjct: 796 LQYWIQELKNSAVSLLNATAVAVAERTDRIIEVGLRAYRAILH--IPTRIRQ 845


>tr|A5GKK0|A5GKK0_SYNPW Predicted phosphatase/phosphohexomutase
OS=Synechococcus sp. (strain WH7803) GN=SynWH7803_1039
PE=4 SV=1
Length = 221

Score = 33.5 bits (75), Expect = 7.9
Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Frame = -1

Query: 454 YQLGRLEVNGEDLDCWIISESNSGCQMLTDESINV--LSSTDRLWSVGLSSSAACPH 290
YQL L++N DCW +S++GCQ V L T+ L + C H
Sbjct: 151 YQLAALKLNVRPQDCWAFEDSDAGCQSARQAGCTVWRLMPTNALSASSPLEDITCIH 207